Wall clock time and date at job start Mon Mar 30 2020 00:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46600 * 2 1 4 4 C 1.52998 * 109.46791 * 119.99947 * 2 1 3 5 5 C 1.53001 * 109.46687 * 185.00024 * 4 2 1 6 6 O 1.42897 * 109.47497 * 180.02562 * 5 4 2 7 7 N 1.46495 * 109.47047 * 240.00149 * 2 1 3 8 8 C 1.34777 * 120.00139 * 84.99749 * 7 2 1 9 9 O 1.21607 * 119.99780 * 359.97438 * 8 7 2 10 10 C 1.47432 * 120.00059 * 179.97438 * 8 7 2 11 11 C 1.39225 * 120.28497 * 354.16847 * 10 8 7 12 12 C 1.38215 * 120.09362 * 180.29521 * 11 10 8 13 13 C 1.38825 * 120.67538 * 359.44064 * 12 11 10 14 14 C 1.37602 * 120.57065 * 0.56135 * 13 12 11 15 15 C 1.40705 * 119.87833 * 359.72169 * 14 13 12 16 16 C 1.40889 * 120.32498 * 180.02562 * 15 14 13 17 17 H 1.08008 * 119.99862 * 145.82949 * 16 15 14 18 18 C 1.40273 * 120.00236 * 325.83287 * 16 15 14 19 19 N 1.30632 * 119.99710 * 350.75811 * 18 16 15 20 20 Si 1.86795 * 120.00093 * 170.76317 * 18 16 15 21 21 H 1.48499 * 109.47430 * 59.99664 * 20 18 16 22 22 H 1.48499 * 109.47133 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47196 * 299.99591 * 20 18 16 24 24 H 1.09005 * 109.46885 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46906 * 299.99640 * 1 2 3 26 26 H 1.08996 * 109.47244 * 60.00275 * 1 2 3 27 27 H 1.08997 * 109.47881 * 304.99670 * 4 2 1 28 28 H 1.09004 * 109.47222 * 65.00514 * 4 2 1 29 29 H 1.09001 * 109.47341 * 300.00135 * 5 4 2 30 30 H 1.09002 * 109.47376 * 59.99704 * 5 4 2 31 31 H 0.96695 * 114.00384 * 179.97438 * 6 5 4 32 32 H 0.97005 * 119.99908 * 265.00341 * 7 2 1 33 33 H 1.08006 * 119.95331 * 0.02562 * 11 10 8 34 34 H 1.08004 * 119.66081 * 179.69693 * 12 11 10 35 35 H 1.07999 * 119.71992 * 180.29924 * 13 12 11 36 36 H 1.07994 * 120.05943 * 179.74518 * 14 13 12 37 37 H 0.97001 * 119.99775 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 8 4.0413 -1.2873 2.4801 7 7 2.0184 -0.6906 -1.1962 8 6 2.1470 -0.0182 -2.3571 9 8 1.8573 1.1616 -2.4118 10 6 2.6390 -0.7131 -3.5608 11 6 3.0866 -2.0288 -3.4783 12 6 3.5527 -2.6744 -4.6080 13 6 3.5704 -2.0282 -5.8365 14 6 3.1346 -0.7279 -5.9496 15 6 2.6607 -0.0461 -4.8137 16 6 2.2117 1.2851 -4.9188 17 1 1.3956 1.6302 -4.3012 18 6 2.8245 2.1625 -5.8257 19 7 3.9208 1.8059 -6.4400 20 14 2.0730 3.8407 -6.1546 21 1 2.0170 4.6148 -4.8886 22 1 2.9057 4.5706 -7.1441 23 1 0.6992 3.6711 -6.6923 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.6055 -0.2618 2.1370 28 1 1.7517 -1.7716 1.2056 29 1 3.9995 -1.0727 0.4260 30 1 3.8532 0.4370 1.3573 31 1 5.0021 -1.2598 2.5855 32 1 2.2490 -1.6318 -1.1526 33 1 3.0736 -2.5443 -2.5293 34 1 3.9028 -3.6935 -4.5351 35 1 3.9334 -2.5489 -6.7103 36 1 3.1559 -0.2317 -6.9086 37 1 4.3448 2.4128 -7.0668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601326610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:43 Heat of formation + Delta-G solvation = -101.764164 kcal Electronic energy + Delta-G solvation = -19768.290166 eV Core-core repulsion = 16701.796618 eV Total energy + Delta-G solvation = -3066.493548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84024 -38.91984 -38.00140 -36.47940 -35.55000 -32.99260 -31.70986 -30.90549 -29.79645 -27.30118 -24.73644 -23.79898 -22.83104 -21.71124 -21.12845 -19.35255 -18.41580 -17.85173 -17.26633 -16.92660 -15.97304 -15.91052 -15.77045 -15.49720 -15.11734 -14.89369 -14.48289 -14.13547 -14.02122 -13.59192 -13.27264 -12.87403 -12.86519 -12.79579 -12.78445 -12.48011 -12.28162 -12.03647 -11.93539 -11.84719 -11.46576 -11.13275 -10.91861 -10.22178 -9.92496 -9.38305 -9.22145 -8.66809 -6.35104 0.53968 1.02686 1.33094 1.44470 1.51036 2.20844 2.38374 2.49529 2.80332 3.19613 3.73741 4.00665 4.02565 4.20903 4.35812 4.40168 4.46595 4.52673 4.60026 4.62895 4.81987 4.88523 4.91692 5.05395 5.11132 5.19968 5.25898 5.32065 5.35618 5.63143 5.76494 5.83957 6.07071 6.11835 6.35417 6.66010 6.82101 6.84078 6.93994 7.03106 7.71272 8.30661 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.006207 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.787687 B = 4509.733317 C = 5401.029834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.062 0.938 4 C -0.113 4.113 5 C 0.075 3.925 6 O -0.588 6.588 7 N -0.724 5.724 8 C 0.562 3.438 9 O -0.578 6.578 10 C -0.280 4.280 11 C -0.054 4.054 12 C -0.237 4.237 13 C -0.093 4.093 14 C -0.178 4.178 15 C 0.114 3.886 16 C -0.457 4.457 17 H 0.081 0.919 18 C 0.032 3.968 19 N -0.824 5.824 20 Si 0.977 3.023 21 H -0.273 1.273 22 H -0.260 1.260 23 H -0.258 1.258 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.031 0.969 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.397 0.603 32 H 0.404 0.596 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -5.861 10.694 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.003 4.003 6 O -0.396 6.396 7 N -0.379 5.379 8 C 0.355 3.645 9 O -0.459 6.459 10 C -0.285 4.285 11 C -0.073 4.073 12 C -0.256 4.256 13 C -0.112 4.112 14 C -0.197 4.197 15 C 0.110 3.890 16 C -0.486 4.486 17 H 0.099 0.901 18 C -0.183 4.183 19 N -0.451 5.451 20 Si 0.799 3.201 21 H -0.199 1.199 22 H -0.184 1.184 23 H -0.182 1.182 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.246 0.754 32 H 0.241 0.759 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.477 -5.043 10.593 11.825 hybrid contribution 0.634 0.700 -0.625 1.133 sum -0.843 -4.343 9.968 10.906 Atomic orbital electron populations 1.22101 0.94519 1.02745 1.01958 1.20827 0.94686 0.96592 0.83812 0.91993 1.21694 0.94173 1.02355 0.96829 1.22136 0.95171 0.95669 0.87340 1.86373 1.29098 1.78693 1.45420 1.45930 1.69014 1.14001 1.08913 1.18395 0.76598 0.85940 0.83572 1.90653 1.52277 1.17671 1.85313 1.19876 1.18079 0.97571 0.92971 1.21063 0.95381 0.92375 0.98453 1.20798 1.11043 1.00959 0.92804 1.21178 0.97712 0.94254 0.98007 1.21293 1.06049 0.94397 0.97963 1.17868 0.87653 0.93031 0.90426 1.20085 1.15755 0.95739 1.16979 0.90072 1.26780 0.94235 1.04379 0.92903 1.69740 1.15122 1.38651 1.21566 0.85328 0.79544 0.76709 0.78540 1.19855 1.18363 1.18180 0.91128 0.89704 0.94975 0.88614 0.89618 0.93723 0.94001 0.75384 0.75906 0.85027 0.85023 0.86329 0.88311 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.48 71.98 0.68 -3.36 16 2 C 0.15 4.11 2.57 44.99 0.12 4.23 16 3 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 4 C -0.11 -2.40 5.12 30.59 0.16 -2.24 16 5 C 0.07 1.66 6.93 71.98 0.50 2.16 16 6 O -0.59 -11.93 13.66 -148.98 -2.03 -13.97 16 7 N -0.72 -24.02 4.48 -445.80 -2.00 -26.02 16 8 C 0.56 25.77 7.68 86.67 0.67 26.44 16 9 O -0.58 -31.19 13.26 -4.05 -0.05 -31.24 16 10 C -0.28 -13.58 5.92 -19.70 -0.12 -13.69 16 11 C -0.05 -2.14 9.52 22.50 0.21 -1.93 16 12 C -0.24 -9.20 10.03 22.40 0.22 -8.97 16 13 C -0.09 -4.03 10.01 22.26 0.22 -3.81 16 14 C -0.18 -9.21 8.62 22.72 0.20 -9.01 16 15 C 0.11 6.30 5.51 -21.11 -0.12 6.19 16 16 C -0.46 -26.44 7.67 23.41 0.18 -26.26 16 17 H 0.08 4.93 5.92 -2.91 -0.02 4.92 16 18 C 0.03 1.70 5.25 85.37 0.45 2.15 16 19 N -0.82 -44.47 11.14 21.88 0.24 -44.23 16 20 Si 0.98 42.01 29.57 68.60 2.03 44.04 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 25 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.04 1.04 7.75 -2.39 -0.02 1.02 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.40 4.72 9.12 -74.06 -0.68 4.04 16 32 H 0.40 11.11 6.67 -92.70 -0.62 10.49 16 33 H 0.13 3.99 6.44 -2.91 -0.02 3.97 16 34 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 35 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.10 5.36 6.59 -2.91 -0.02 5.34 16 37 H 0.29 14.10 8.29 -92.71 -0.77 13.33 16 Total: -1.00 -69.44 311.09 1.36 -68.08 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.20 Total: 31.45 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 3.37 Total: -28.12 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.75 Total: -70.24 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -2.09 Total: -45.21 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -69.44 1.36 -68.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601326610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.683 kcal (2) G-P(sol) polarization free energy of solvation -69.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds