Wall clock time and date at job start Sun Mar 29 2020 23:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47144 * 2 1 4 4 H 1.08998 * 109.46802 * 55.00059 * 3 2 1 5 5 O 1.42899 * 109.46754 * 295.00078 * 3 2 1 6 6 C 1.52995 * 109.47360 * 175.00344 * 3 2 1 7 7 N 1.46494 * 109.47394 * 184.99982 * 6 3 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 3 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39235 * 120.28378 * 356.68142 * 10 8 7 12 12 C 1.38223 * 120.09183 * 180.28231 * 11 10 8 13 13 C 1.38824 * 120.67578 * 359.69536 * 12 11 10 14 14 C 1.37601 * 120.57302 * 0.02562 * 13 12 11 15 15 C 1.40712 * 119.87956 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32906 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00234 * 145.79747 * 16 15 14 18 18 C 1.40273 * 119.99571 * 325.79352 * 16 15 14 19 19 N 1.30635 * 120.00253 * 340.74281 * 18 16 15 20 20 Si 1.86798 * 119.99912 * 160.74547 * 18 16 15 21 21 H 1.48507 * 109.47415 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47275 * 299.99863 * 20 18 16 23 23 H 1.48501 * 109.47305 * 59.99898 * 20 18 16 24 24 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47100 * 300.00013 * 1 2 3 26 26 H 1.08998 * 109.47567 * 59.99647 * 1 2 3 27 27 H 1.09000 * 109.47100 * 239.99987 * 2 1 3 28 28 H 1.08997 * 109.47749 * 119.99839 * 2 1 3 29 29 H 0.96694 * 114.00419 * 300.00027 * 5 3 2 30 30 H 1.09004 * 109.47250 * 64.99839 * 6 3 2 31 31 H 1.09005 * 109.47069 * 305.00015 * 6 3 2 32 32 H 0.96994 * 119.99831 * 359.97438 * 7 6 3 33 33 H 1.08001 * 119.94893 * 359.97438 * 11 10 8 34 34 H 1.07988 * 119.65914 * 179.72052 * 12 11 10 35 35 H 1.08002 * 119.71756 * 180.02562 * 13 12 11 36 36 H 1.07997 * 120.06577 * 180.02562 * 14 13 12 37 37 H 0.97003 * 120.00071 * 354.83739 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4444 0.1256 7 7 4.0432 2.8238 0.2457 8 6 5.3623 3.0712 0.3693 9 8 6.1554 2.1495 0.3807 10 6 5.8437 4.4595 0.4907 11 6 4.9485 5.5228 0.4092 12 6 5.4049 6.8229 0.5177 13 6 6.7538 7.0859 0.7147 14 6 7.6617 6.0559 0.8050 15 6 7.2232 4.7233 0.6967 16 6 8.1447 3.6614 0.7873 17 1 7.8503 2.7284 1.2443 18 6 9.4447 3.8163 0.2836 19 7 9.7013 4.7590 -0.5835 20 14 10.8090 2.6744 0.8529 21 1 12.0784 3.0439 0.1765 22 1 10.9769 2.7980 2.3232 23 1 10.4564 1.2729 0.5111 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0140 1.6543 -2.0139 30 1 4.0029 0.9837 -0.7598 31 1 3.8571 0.8801 1.0112 32 1 3.4107 3.5591 0.2363 33 1 3.8966 5.3315 0.2561 34 1 4.7051 7.6425 0.4490 35 1 7.0934 8.1077 0.7977 36 1 8.7091 6.2699 0.9587 37 1 8.9799 5.3035 -0.9358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601592539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:22 Heat of formation + Delta-G solvation = -88.836132 kcal Electronic energy + Delta-G solvation = -19522.385637 eV Core-core repulsion = 16456.452690 eV Total energy + Delta-G solvation = -3065.932946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.20640 -38.02796 -36.77423 -34.13813 -33.47474 -32.88817 -30.23186 -29.41402 -28.06109 -25.24682 -23.67580 -21.99105 -21.63433 -20.85556 -19.37753 -18.11527 -16.81911 -16.27824 -16.06361 -15.03730 -14.79322 -14.49186 -14.19493 -14.03738 -13.82866 -13.58368 -13.25789 -12.67021 -12.33459 -12.31185 -12.08532 -12.06123 -11.62285 -11.18820 -11.12753 -10.92217 -10.89677 -10.73096 -10.36335 -10.16458 -10.09709 -9.59105 -9.06706 -8.50661 -8.39716 -7.77567 -7.59284 -7.13672 -4.45253 2.25440 2.75209 3.20618 3.31537 3.41263 3.80419 4.04626 4.07651 4.34649 4.63560 4.65480 4.83041 4.87079 5.26087 5.32034 5.47684 5.53428 5.72547 5.75638 5.79599 5.90861 6.03940 6.06428 6.11398 6.20654 6.51921 6.73352 7.00287 7.10055 7.29354 7.51136 7.52713 7.61913 7.73887 7.89937 8.10575 8.22372 8.39154 8.74554 8.86985 9.36466 10.05143 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.005335 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.070063 B = 5247.304949 C = 6355.917999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.095 3.905 4 H 0.102 0.898 5 O -0.559 6.559 6 C 0.094 3.906 7 N -0.744 5.744 8 C 0.562 3.438 9 O -0.540 6.540 10 C -0.266 4.266 11 C -0.043 4.043 12 C -0.259 4.259 13 C -0.075 4.075 14 C -0.202 4.202 15 C 0.121 3.879 16 C -0.468 4.468 17 H 0.105 0.895 18 C 0.031 3.969 19 N -0.794 5.794 20 Si 1.071 2.929 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.273 1.273 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.375 0.625 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.395 0.605 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 -5.522 0.516 12.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.192 4.192 3 C 0.036 3.964 4 H 0.120 0.880 5 O -0.364 6.364 6 C -0.031 4.031 7 N -0.399 5.399 8 C 0.357 3.643 9 O -0.419 6.419 10 C -0.271 4.271 11 C -0.062 4.062 12 C -0.279 4.279 13 C -0.094 4.094 14 C -0.221 4.221 15 C 0.117 3.883 16 C -0.494 4.494 17 H 0.122 0.878 18 C -0.190 4.190 19 N -0.417 5.417 20 Si 0.894 3.106 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.198 1.198 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.223 0.777 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.823 -6.073 0.747 11.573 hybrid contribution -1.801 0.409 -0.277 1.868 sum -11.625 -5.664 0.471 12.940 Atomic orbital electron populations 1.21691 0.94991 1.01391 1.02408 1.22161 0.97098 0.96746 1.03178 1.22229 0.92868 0.93284 0.88043 0.87969 1.86565 1.76732 1.57474 1.15634 1.21850 0.93455 0.85586 1.02210 1.45913 1.08324 1.07194 1.78518 1.18399 0.80596 0.89826 0.75521 1.90672 1.53963 1.46514 1.50724 1.19400 0.95439 0.90437 1.21811 1.20745 0.96446 0.93006 0.95953 1.20248 0.95244 0.95194 1.17195 1.20747 0.93541 0.97239 0.97894 1.21251 0.98649 0.92746 1.09442 1.17504 0.90820 0.92457 0.87541 1.21169 0.95898 1.01582 1.30790 0.87752 1.27268 1.00507 0.97771 0.93504 1.70389 1.39183 1.13658 1.18494 0.83555 0.74459 0.75537 0.77052 1.19933 1.19958 1.19844 0.92855 0.92744 0.92062 0.91357 0.90741 0.77718 0.92012 0.91436 0.77010 0.89004 0.88871 0.88871 0.87531 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.81 37.16 0.36 -0.85 16 2 C -0.15 -1.37 5.61 -26.73 -0.15 -1.52 16 3 C 0.10 1.05 3.00 -26.73 -0.08 0.97 16 4 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 5 O -0.56 -6.44 12.82 -35.23 -0.45 -6.89 16 6 C 0.09 1.37 5.31 -4.05 -0.02 1.35 16 7 N -0.74 -13.42 5.45 -61.38 -0.33 -13.75 16 8 C 0.56 13.24 7.73 -12.52 -0.10 13.15 16 9 O -0.54 -14.43 13.56 5.27 0.07 -14.36 16 10 C -0.27 -6.59 5.92 -104.36 -0.62 -7.20 16 11 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 12 C -0.26 -5.54 10.03 -39.37 -0.39 -5.93 16 13 C -0.08 -1.69 10.01 -39.60 -0.40 -2.08 16 14 C -0.20 -5.09 7.87 -38.88 -0.31 -5.39 16 15 C 0.12 3.27 5.17 -106.54 -0.55 2.72 16 16 C -0.47 -12.99 7.65 -37.81 -0.29 -13.28 16 17 H 0.10 3.02 5.92 -52.49 -0.31 2.71 16 18 C 0.03 0.81 5.04 -17.30 -0.09 0.73 16 19 N -0.79 -21.45 12.57 55.56 0.70 -20.76 16 20 Si 1.07 22.67 29.98 -169.99 -5.10 17.58 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.38 3.33 9.04 45.56 0.41 3.74 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.39 6.45 6.51 -40.82 -0.27 6.18 16 33 H 0.09 1.67 6.41 -52.49 -0.34 1.34 16 34 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.11 2.73 6.94 -52.49 -0.36 2.37 16 37 H 0.30 8.25 6.55 -40.82 -0.27 7.98 16 LS Contribution 310.71 15.07 4.68 4.68 Total: -1.00 -30.92 310.71 -7.57 -38.49 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -4.14 Total: 13.65 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.00 Total: -18.63 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.36 Total: -34.51 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.38 Total: -21.25 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.10 Total: 17.58 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.92 -7.57 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.347 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds