Wall clock time and date at job start Sun Mar 29 2020 23:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47144 * 2 1 4 4 H 1.08998 * 109.46802 * 55.00059 * 3 2 1 5 5 O 1.42899 * 109.46754 * 295.00078 * 3 2 1 6 6 C 1.52995 * 109.47360 * 175.00344 * 3 2 1 7 7 N 1.46494 * 109.47394 * 184.99982 * 6 3 2 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 3 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39235 * 120.28378 * 356.68142 * 10 8 7 12 12 C 1.38223 * 120.09183 * 180.28231 * 11 10 8 13 13 C 1.38824 * 120.67578 * 359.69536 * 12 11 10 14 14 C 1.37601 * 120.57302 * 0.02562 * 13 12 11 15 15 C 1.40712 * 119.87956 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32906 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00234 * 145.79747 * 16 15 14 18 18 C 1.40273 * 119.99571 * 325.79352 * 16 15 14 19 19 N 1.30635 * 120.00253 * 340.74281 * 18 16 15 20 20 Si 1.86798 * 119.99912 * 160.74547 * 18 16 15 21 21 H 1.48507 * 109.47415 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47275 * 299.99863 * 20 18 16 23 23 H 1.48501 * 109.47305 * 59.99898 * 20 18 16 24 24 H 1.08998 * 109.46848 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47100 * 300.00013 * 1 2 3 26 26 H 1.08998 * 109.47567 * 59.99647 * 1 2 3 27 27 H 1.09000 * 109.47100 * 239.99987 * 2 1 3 28 28 H 1.08997 * 109.47749 * 119.99839 * 2 1 3 29 29 H 0.96694 * 114.00419 * 300.00027 * 5 3 2 30 30 H 1.09004 * 109.47250 * 64.99839 * 6 3 2 31 31 H 1.09005 * 109.47069 * 305.00015 * 6 3 2 32 32 H 0.96994 * 119.99831 * 359.97438 * 7 6 3 33 33 H 1.08001 * 119.94893 * 359.97438 * 11 10 8 34 34 H 1.07988 * 119.65914 * 179.72052 * 12 11 10 35 35 H 1.08002 * 119.71756 * 180.02562 * 13 12 11 36 36 H 1.07997 * 120.06577 * 180.02562 * 14 13 12 37 37 H 0.97003 * 120.00071 * 354.83739 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4444 0.1256 7 7 4.0432 2.8238 0.2457 8 6 5.3623 3.0712 0.3693 9 8 6.1554 2.1495 0.3807 10 6 5.8437 4.4595 0.4907 11 6 4.9485 5.5228 0.4092 12 6 5.4049 6.8229 0.5177 13 6 6.7538 7.0859 0.7147 14 6 7.6617 6.0559 0.8050 15 6 7.2232 4.7233 0.6967 16 6 8.1447 3.6614 0.7873 17 1 7.8503 2.7284 1.2443 18 6 9.4447 3.8163 0.2836 19 7 9.7013 4.7590 -0.5835 20 14 10.8090 2.6744 0.8529 21 1 12.0784 3.0439 0.1765 22 1 10.9769 2.7980 2.3232 23 1 10.4564 1.2729 0.5111 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0140 1.6543 -2.0139 30 1 4.0029 0.9837 -0.7598 31 1 3.8571 0.8801 1.0112 32 1 3.4107 3.5591 0.2363 33 1 3.8966 5.3315 0.2561 34 1 4.7051 7.6425 0.4490 35 1 7.0934 8.1077 0.7977 36 1 8.7091 6.2699 0.9587 37 1 8.9799 5.3035 -0.9358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601592539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:22 Heat of formation + Delta-G solvation = -110.793860 kcal Electronic energy + Delta-G solvation = -19523.337795 eV Core-core repulsion = 16456.452690 eV Total energy + Delta-G solvation = -3066.885105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.88795 -39.29280 -38.43857 -35.96637 -35.06098 -33.72375 -31.98980 -31.26272 -29.31195 -27.09911 -24.95219 -23.58758 -22.70558 -22.51509 -21.07195 -19.98562 -18.32596 -17.40463 -17.21171 -16.64134 -16.40932 -16.03059 -15.70866 -15.59270 -15.41087 -15.03783 -14.45720 -14.34630 -13.95418 -13.78834 -13.35407 -13.00454 -12.91801 -12.86770 -12.70193 -12.50473 -12.02970 -11.96460 -11.85544 -11.76574 -11.49982 -11.03049 -10.95874 -10.35540 -10.03157 -9.61840 -9.50469 -9.11212 -6.47295 0.38881 0.89821 1.46301 1.61714 1.76716 2.23460 2.30825 2.38214 2.73523 3.44778 3.55297 3.65792 3.97287 4.06336 4.20733 4.27365 4.36045 4.43318 4.57792 4.65428 4.80594 4.84291 4.87304 4.91774 5.10918 5.13129 5.26776 5.40882 5.41874 5.56148 5.64770 5.70582 5.88565 5.95626 6.19129 6.32446 6.66663 6.74715 6.84677 6.91378 7.58605 8.03475 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.005335 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.070063 B = 5247.304949 C = 6355.917999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 C 0.110 3.890 4 H 0.107 0.893 5 O -0.568 6.568 6 C 0.091 3.909 7 N -0.724 5.724 8 C 0.556 3.444 9 O -0.581 6.581 10 C -0.286 4.286 11 C -0.042 4.042 12 C -0.245 4.245 13 C -0.071 4.071 14 C -0.226 4.226 15 C 0.096 3.904 16 C -0.512 4.512 17 H 0.081 0.919 18 C -0.003 4.003 19 N -0.817 5.817 20 Si 1.116 2.884 21 H -0.264 1.264 22 H -0.259 1.259 23 H -0.271 1.271 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.387 0.613 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.167 -4.960 0.607 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.187 4.187 3 C 0.050 3.950 4 H 0.125 0.875 5 O -0.375 6.375 6 C -0.034 4.034 7 N -0.378 5.378 8 C 0.349 3.651 9 O -0.463 6.463 10 C -0.291 4.291 11 C -0.060 4.060 12 C -0.263 4.263 13 C -0.090 4.090 14 C -0.245 4.245 15 C 0.092 3.908 16 C -0.539 4.539 17 H 0.099 0.901 18 C -0.218 4.218 19 N -0.441 5.441 20 Si 0.934 3.066 21 H -0.188 1.188 22 H -0.183 1.183 23 H -0.197 1.197 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.236 0.764 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.243 0.757 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.108 0.892 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.312 -5.493 0.832 13.508 hybrid contribution -1.340 0.342 -0.320 1.420 sum -13.652 -5.151 0.512 14.601 Atomic orbital electron populations 1.21668 0.94112 1.02149 1.02261 1.22127 0.97696 0.95113 1.03809 1.22126 0.89749 0.94889 0.88219 0.87479 1.86540 1.76713 1.58071 1.16217 1.22110 0.96189 0.83346 1.01714 1.45700 1.06525 1.09212 1.76365 1.18448 0.82102 0.89136 0.75425 1.90651 1.55565 1.47431 1.52622 1.19832 0.95449 0.92319 1.21467 1.21150 0.97975 0.92355 0.94561 1.20810 0.95354 0.96304 1.13879 1.21162 0.93817 0.98066 0.95934 1.21220 0.98670 0.93134 1.11521 1.17901 0.92103 0.93164 0.87608 1.21107 0.97584 1.01332 1.33923 0.90136 1.28494 1.02308 0.98402 0.92585 1.70502 1.38229 1.15248 1.20106 0.83017 0.72303 0.73726 0.77592 1.18795 1.18334 1.19653 0.91700 0.92630 0.92451 0.90677 0.90299 0.76385 0.92634 0.91933 0.75692 0.85022 0.84588 0.85661 0.89168 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.81 71.98 0.71 -1.29 16 2 C -0.15 -2.30 5.61 30.60 0.17 -2.13 16 3 C 0.11 2.17 3.00 30.60 0.09 2.26 16 4 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 5 O -0.57 -11.61 12.82 -148.98 -1.91 -13.52 16 6 C 0.09 2.55 5.31 86.38 0.46 3.01 16 7 N -0.72 -25.20 5.45 -466.37 -2.54 -27.74 16 8 C 0.56 26.42 7.73 86.67 0.67 27.09 16 9 O -0.58 -32.24 13.56 -4.06 -0.06 -32.30 16 10 C -0.29 -14.16 5.92 -19.70 -0.12 -14.27 16 11 C -0.04 -1.69 9.53 22.51 0.21 -1.48 16 12 C -0.24 -9.48 10.03 22.41 0.22 -9.25 16 13 C -0.07 -3.05 10.01 22.26 0.22 -2.82 16 14 C -0.23 -11.60 7.87 22.72 0.18 -11.42 16 15 C 0.10 5.35 5.17 -21.11 -0.11 5.24 16 16 C -0.51 -29.98 7.65 23.41 0.18 -29.80 16 17 H 0.08 4.98 5.92 -2.91 -0.02 4.97 16 18 C 0.00 -0.15 5.04 85.37 0.43 0.29 16 19 N -0.82 -46.14 12.57 21.88 0.28 -45.87 16 20 Si 1.12 47.43 29.98 68.60 2.06 49.49 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.84 7.82 -2.39 -0.02 0.82 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.39 5.96 9.04 -74.06 -0.67 5.29 16 30 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.41 12.17 6.51 -92.71 -0.60 11.57 16 33 H 0.13 4.21 6.41 -2.91 -0.02 4.19 16 34 H 0.14 4.19 8.06 -2.92 -0.02 4.16 16 35 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 36 H 0.09 4.83 6.94 -2.91 -0.02 4.81 16 37 H 0.28 16.45 6.55 -92.71 -0.61 15.84 16 Total: -1.00 -70.33 310.71 1.13 -69.20 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.02 Total: 35.33 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 3.32 Total: -34.59 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -2.27 Total: -73.61 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -1.96 Total: -45.82 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.06 Total: 49.49 kcal Total: -70.33 1.13 -69.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.591 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds