Wall clock time and date at job start Mon Mar 30 2020 00:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.55951 * 2 1 4 4 C 1.53075 * 117.50919 * 145.70749 * 2 1 3 5 5 C 1.52994 * 117.49769 * 214.31307 * 2 1 3 6 6 H 1.08999 * 117.49785 * 144.99808 * 5 2 1 7 7 C 1.50707 * 117.50008 * 0.02562 * 5 2 1 8 8 C 1.34514 * 125.78791 * 120.08869 * 7 5 2 9 9 C 1.41389 * 106.83950 * 180.02562 * 8 7 5 10 10 C 1.34513 * 106.83899 * 359.97438 * 9 8 7 11 11 C 1.50699 * 125.78818 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46866 * 89.99906 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 O 1.21296 * 119.99979 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00033 * 180.02562 * 13 12 11 16 16 C 1.37097 * 119.99940 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00056 * 0.02562 * 16 15 13 18 18 C 1.38948 * 119.99682 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00493 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99894 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47266 * 59.99963 * 20 18 16 22 22 H 1.48496 * 109.47319 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46921 * 299.99770 * 20 18 16 24 24 O 1.34296 * 125.78838 * 300.43619 * 7 5 2 25 25 H 1.08997 * 109.47324 * 205.68284 * 1 2 3 26 26 H 1.08997 * 109.46802 * 325.68861 * 1 2 3 27 27 H 1.09004 * 109.46608 * 85.68485 * 1 2 3 28 28 H 1.08998 * 117.51413 * 359.97438 * 4 2 1 29 29 H 1.09002 * 117.50650 * 214.95533 * 4 2 1 30 30 H 1.07997 * 126.58101 * 0.02562 * 8 7 5 31 31 H 1.07995 * 126.57775 * 179.97438 * 9 8 7 32 32 H 1.09000 * 109.47247 * 330.00075 * 11 10 9 33 33 H 1.09001 * 109.47358 * 209.99501 * 11 10 9 34 34 H 1.08993 * 109.46955 * 300.00219 * 12 11 10 35 35 H 1.09000 * 109.47050 * 60.00048 * 12 11 10 36 36 H 0.96996 * 119.99850 * 359.97438 * 15 13 12 37 37 H 0.97002 * 120.00301 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1217 0.7649 5 6 2.2365 -1.1209 -0.7650 6 1 3.1713 -0.8750 -1.2686 7 6 1.3720 -2.1402 -1.4614 8 6 1.3693 -2.3991 -2.7814 9 6 0.4131 -3.4181 -2.9970 10 6 -0.1109 -3.7213 -1.7957 11 6 -1.1734 -4.7573 -1.5338 12 6 -0.5107 -6.1073 -1.2515 13 6 -1.5732 -7.1432 -0.9890 14 8 -2.7451 -6.8323 -1.0236 15 7 -1.2213 -8.4150 -0.7146 16 6 -2.1879 -9.3573 -0.4752 17 1 -3.2314 -9.0806 -0.5069 18 6 -1.8250 -10.6685 -0.1928 19 7 -0.5554 -11.0055 -0.1557 20 14 -3.1420 -11.9526 0.1327 21 1 -4.0217 -12.0723 -1.0578 22 1 -2.4989 -13.2627 0.4072 23 1 -3.9523 -11.5437 1.3079 24 8 0.4691 -2.9395 -0.8703 25 1 -0.3634 -0.9261 0.4454 26 1 -0.3633 0.8488 0.5793 27 1 -0.3633 0.0773 -1.0248 28 1 1.6123 -1.8593 1.2685 29 1 3.1724 -0.8761 1.2679 30 1 1.9802 -1.9205 -3.5324 31 1 0.1532 -3.8669 -3.9443 32 1 -1.8187 -4.8451 -2.4078 33 1 -1.7686 -4.4574 -0.6713 34 1 0.0845 -6.4072 -2.1139 35 1 0.1346 -6.0196 -0.3775 36 1 -0.2841 -8.6635 -0.6865 37 1 -0.3021 -11.9208 0.0418 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604544506.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:53 Heat of formation + Delta-G solvation = -35.286920 kcal Electronic energy + Delta-G solvation = -18871.191831 eV Core-core repulsion = 15807.580952 eV Total energy + Delta-G solvation = -3063.610878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.58095 -40.20051 -38.66159 -36.14825 -34.82026 -33.73014 -33.26275 -30.30442 -29.20011 -27.30222 -25.33631 -22.99723 -22.81573 -21.58136 -20.95992 -20.62381 -19.88858 -18.06452 -17.25923 -17.03856 -16.57375 -16.48252 -16.22897 -15.81047 -15.34129 -14.55994 -14.22197 -14.15212 -14.00359 -13.71608 -13.60243 -13.37309 -13.17140 -12.98315 -12.85057 -12.72223 -12.45160 -12.37269 -12.12613 -12.01911 -11.53496 -11.50714 -10.97070 -10.73546 -10.42588 -10.05508 -9.08290 -8.48803 -5.98690 0.71504 1.38871 1.41077 1.52394 1.65249 1.92196 2.00464 2.29481 2.90464 3.17376 3.18168 3.53080 3.75943 3.86715 3.97010 4.04007 4.12079 4.19921 4.37025 4.42970 4.43728 4.69811 4.73568 4.82115 4.85002 4.87721 4.92556 5.02178 5.06880 5.13426 5.18406 5.23823 5.38884 5.41214 5.66165 5.96291 6.28344 6.54670 7.08113 7.51385 8.05563 8.68270 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037682 B = 0.003293 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.875744 B = 8501.276696 C = 8564.971857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 H 0.140 0.860 4 C -0.170 4.170 5 C -0.090 4.090 6 H 0.158 0.842 7 C 0.008 3.992 8 C -0.211 4.211 9 C -0.210 4.210 10 C -0.022 4.022 11 C -0.010 4.010 12 C -0.111 4.111 13 C 0.438 3.562 14 O -0.634 6.634 15 N -0.570 5.570 16 C -0.340 4.340 17 H 0.081 0.919 18 C -0.012 4.012 19 N -0.920 5.920 20 Si 0.995 3.005 21 H -0.270 1.270 22 H -0.270 1.270 23 H -0.271 1.271 24 O -0.188 6.188 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.397 0.603 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 19.513 -2.052 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.150 4.150 3 H 0.157 0.843 4 C -0.207 4.207 5 C -0.108 4.108 6 H 0.176 0.824 7 C -0.041 4.041 8 C -0.230 4.230 9 C -0.229 4.229 10 C -0.072 4.072 11 C -0.047 4.047 12 C -0.151 4.151 13 C 0.226 3.774 14 O -0.522 6.522 15 N -0.206 5.206 16 C -0.469 4.469 17 H 0.099 0.901 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.818 3.182 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.196 1.196 24 O -0.085 6.085 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.143 0.857 30 H 0.187 0.813 31 H 0.178 0.822 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.231 0.769 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.475 19.509 -1.727 21.340 hybrid contribution -0.204 -1.142 -0.014 1.160 sum 8.271 18.367 -1.741 20.219 Atomic orbital electron populations 1.21389 0.93597 1.01867 1.01629 1.22623 0.95144 0.95033 1.02169 0.84266 1.23251 1.03762 1.01330 0.92361 1.20867 0.99297 0.96144 0.94474 0.82429 1.21893 0.94045 0.95951 0.92250 1.21749 1.03629 1.01868 0.95753 1.21844 1.00824 1.01688 0.98500 1.22424 1.00105 0.96932 0.87712 1.19627 0.92631 0.88453 1.04037 1.21395 0.96917 0.92547 1.04278 1.20810 0.90237 0.83901 0.82429 1.90487 1.21474 1.81203 1.59055 1.41977 1.09596 1.07538 1.61488 1.19704 0.90273 0.89768 1.47164 0.90055 1.26094 0.99320 0.99551 0.96265 1.69671 1.16781 1.20903 1.48693 0.84964 0.77527 0.76772 0.78937 1.19513 1.19416 1.19623 1.83931 1.44214 1.41904 1.38488 0.94243 0.90415 0.92995 0.90200 0.85709 0.81268 0.82192 0.88410 0.91176 0.87869 0.89026 0.76911 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.15 71.98 0.66 -1.71 16 2 C -0.13 -1.98 6.41 -10.77 -0.07 -2.05 16 3 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.17 -2.80 9.82 30.62 0.30 -2.50 16 5 C -0.09 -1.55 6.23 -11.54 -0.07 -1.62 16 6 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 7 C 0.01 0.20 5.90 24.83 0.15 0.35 16 8 C -0.21 -4.91 10.81 22.19 0.24 -4.67 16 9 C -0.21 -5.53 10.81 22.19 0.24 -5.29 16 10 C -0.02 -0.67 6.58 24.83 0.16 -0.50 16 11 C -0.01 -0.33 5.04 29.85 0.15 -0.18 16 12 C -0.11 -3.99 5.68 29.85 0.17 -3.82 16 13 C 0.44 21.26 7.78 87.66 0.68 21.94 16 14 O -0.63 -35.29 15.56 -3.08 -0.05 -35.34 16 15 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 16 C -0.34 -19.55 9.68 84.04 0.81 -18.74 16 17 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 18 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 19 N -0.92 -50.25 13.05 21.66 0.28 -49.96 16 20 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 O -0.19 -5.63 9.61 -2.48 -0.02 -5.65 16 25 H 0.04 0.91 7.26 -2.39 -0.02 0.89 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.08 1.69 7.88 -2.39 -0.02 1.68 16 29 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.10 3.25 8.10 -2.39 -0.02 3.23 16 33 H 0.07 2.51 8.10 -2.39 -0.02 2.49 16 34 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.40 19.89 7.90 -92.71 -0.73 19.15 16 37 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -67.82 321.57 4.85 -62.97 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.34 Total: 33.41 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.89 Total: -19.00 kcal Atomic # 7 Polarization: -80.19 SS G_CDS: -1.34 Total: -81.53 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.07 Total: -40.99 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.82 4.85 -62.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544506.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.685 kcal (2) G-P(sol) polarization free energy of solvation -67.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds