Wall clock time and date at job start Mon Mar 30 2020 00:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 115.55879 * 2 1 4 4 C 1.53001 * 117.49797 * 145.68494 * 2 1 3 5 5 C 1.52997 * 117.50222 * 214.30789 * 2 1 3 6 6 H 1.09004 * 117.51375 * 359.97438 * 5 2 1 7 7 C 1.50704 * 117.49913 * 145.01770 * 5 2 1 8 8 C 1.34513 * 125.79064 * 240.01548 * 7 5 2 9 9 C 1.41383 * 106.83965 * 180.02562 * 8 7 5 10 10 C 1.34518 * 106.84066 * 359.97438 * 9 8 7 11 11 C 1.50694 * 125.78488 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47168 * 90.00483 * 11 10 9 13 13 C 1.50699 * 109.47500 * 179.97438 * 12 11 10 14 14 O 1.21297 * 119.99867 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00325 * 179.97438 * 13 12 11 16 16 C 1.37092 * 119.99974 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00583 * 0.02562 * 16 15 13 18 18 C 1.38955 * 120.00110 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00245 * 179.72419 * 18 16 15 20 20 Si 1.86803 * 119.99625 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47085 * 89.99660 * 20 18 16 22 22 H 1.48497 * 109.46789 * 209.99669 * 20 18 16 23 23 H 1.48490 * 109.47245 * 329.99818 * 20 18 16 24 24 O 1.34301 * 125.78708 * 60.36696 * 7 5 2 25 25 H 1.08999 * 109.46579 * 205.69434 * 1 2 3 26 26 H 1.09000 * 109.47191 * 325.68895 * 1 2 3 27 27 H 1.08993 * 109.47222 * 85.69481 * 1 2 3 28 28 H 1.08994 * 117.50307 * 0.02562 * 4 2 1 29 29 H 1.09003 * 117.49689 * 214.97981 * 4 2 1 30 30 H 1.07999 * 126.58073 * 0.06042 * 8 7 5 31 31 H 1.08001 * 126.57865 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.47553 * 330.00539 * 11 10 9 33 33 H 1.09002 * 109.46725 * 210.00027 * 11 10 9 34 34 H 1.09005 * 109.47338 * 59.99223 * 12 11 10 35 35 H 1.08999 * 109.47071 * 300.00179 * 12 11 10 36 36 H 0.97005 * 119.99841 * 0.02562 * 15 13 12 37 37 H 0.97000 * 120.00281 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 1.6116 -1.8589 -1.2679 7 6 3.5294 -0.7810 -1.4608 8 6 3.7640 -0.8883 -2.7809 9 6 5.0965 -0.4675 -2.9956 10 6 5.5963 -0.1277 -1.7939 11 6 6.9902 0.3811 -1.5311 12 6 7.0039 1.9076 -1.6344 13 6 8.3977 2.4165 -1.3710 14 8 9.2921 1.6351 -1.1244 15 7 8.6505 3.7397 -1.4095 16 6 9.9184 4.2027 -1.1694 17 1 10.7148 3.5070 -0.9498 18 6 10.1791 5.5669 -1.2096 19 7 11.3932 6.0111 -0.9741 20 14 8.8018 6.7702 -1.5901 21 1 8.1436 7.1852 -0.3253 22 1 9.3624 7.9646 -2.2716 23 1 7.8048 6.1173 -2.4759 24 8 4.6448 -0.3259 -0.8671 25 1 -0.3632 -0.9261 0.4456 26 1 -0.3633 0.8488 0.5793 27 1 -0.3633 0.0771 -1.0247 28 1 1.6113 -1.8586 1.2681 29 1 3.1715 -0.8751 1.2684 30 1 3.0678 -1.2297 -3.5327 31 1 5.6139 -0.4266 -3.9428 32 1 7.6753 -0.0390 -2.2675 33 1 7.3036 0.0819 -0.5309 34 1 6.3188 2.3278 -0.8981 35 1 6.6904 2.2068 -2.6346 36 1 7.9351 4.3646 -1.6064 37 1 11.5752 6.9634 -1.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604544509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:58 Heat of formation + Delta-G solvation = -11.492988 kcal Electronic energy + Delta-G solvation = -18721.021099 eV Core-core repulsion = 15658.442003 eV Total energy + Delta-G solvation = -3062.579096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.58591 -38.48465 -37.96820 -34.28727 -33.47878 -32.70111 -31.66815 -29.73776 -28.05104 -25.62858 -23.69813 -22.03610 -21.68205 -20.95167 -19.85716 -19.32777 -18.24728 -17.06726 -16.08304 -15.84657 -15.17138 -14.89491 -14.69804 -14.43332 -13.77322 -13.55257 -13.35958 -12.95348 -12.78997 -12.68705 -12.53016 -12.24094 -12.08840 -11.84314 -11.74779 -11.64910 -11.21853 -10.81958 -10.72908 -10.59407 -10.35756 -9.98954 -9.77513 -9.59732 -8.62103 -8.20338 -8.09799 -6.32802 -3.84327 1.67875 2.60597 2.85794 3.02879 3.07080 3.14984 3.57416 3.71966 4.09325 4.20510 4.47556 4.55034 4.58451 4.94713 4.98863 5.09081 5.12887 5.20996 5.32657 5.37207 5.41985 5.46799 5.48522 5.69383 5.71103 5.75473 5.89055 5.93945 5.97847 6.08831 6.15606 6.24075 6.35927 6.59952 7.25904 7.54977 8.12798 8.56574 8.92482 9.40873 9.79609 10.80195 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025622 B = 0.003654 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.557443 B = 7661.203581 C = 8229.137786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.142 4.142 3 H 0.108 0.892 4 C -0.167 4.167 5 C -0.077 4.077 6 H 0.131 0.869 7 C 0.006 3.994 8 C -0.201 4.201 9 C -0.214 4.214 10 C 0.004 3.996 11 C -0.021 4.021 12 C -0.129 4.129 13 C 0.450 3.550 14 O -0.579 6.579 15 N -0.587 5.587 16 C -0.308 4.308 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.880 5.880 20 Si 0.879 3.121 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.269 1.269 24 O -0.172 6.172 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.372 0.628 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.239 -11.087 -1.248 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 H 0.126 0.874 4 C -0.203 4.203 5 C -0.095 4.095 6 H 0.149 0.851 7 C -0.044 4.044 8 C -0.220 4.220 9 C -0.234 4.234 10 C -0.046 4.046 11 C -0.058 4.058 12 C -0.170 4.170 13 C 0.236 3.764 14 O -0.463 6.463 15 N -0.226 5.226 16 C -0.436 4.436 17 H 0.138 0.862 18 C -0.161 4.161 19 N -0.520 5.520 20 Si 0.705 3.295 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.194 1.194 24 O -0.069 6.069 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.205 0.795 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.442 -11.361 -0.748 24.277 hybrid contribution -0.955 1.123 -0.621 1.600 sum -22.397 -10.237 -1.369 24.664 Atomic orbital electron populations 1.21381 0.92215 1.02226 1.02129 1.22520 0.95404 0.94933 1.03164 0.87421 1.23193 1.03202 1.01303 0.92651 1.20532 0.92019 1.02890 0.94086 0.85099 1.21269 0.87290 1.04175 0.91663 1.21424 0.97457 1.07914 0.95236 1.21573 0.95643 1.07612 0.98525 1.22708 0.91719 1.03187 0.86971 1.19864 0.86197 0.94501 1.05284 1.21527 0.97021 0.95240 1.03227 1.19735 0.89631 0.82834 0.84187 1.90563 1.47068 1.55283 1.53414 1.42239 1.10777 1.05929 1.63615 1.19465 0.85998 0.92942 1.45216 0.86224 1.25051 0.96614 0.96904 0.97533 1.69620 1.19202 1.15061 1.48115 0.86674 0.81938 0.81734 0.79113 1.19564 1.20110 1.19416 1.83933 1.19663 1.65545 1.37753 0.92344 0.91759 0.91955 0.88018 0.88009 0.83804 0.83427 0.87969 0.89370 0.90098 0.89893 0.79533 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.19 37.16 0.38 -0.40 16 2 C -0.14 -1.23 6.11 -90.62 -0.55 -1.78 16 3 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.17 -1.45 9.81 -26.73 -0.26 -1.72 16 5 C -0.08 -0.73 5.96 -91.77 -0.55 -1.27 16 6 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 7 C 0.01 0.07 6.80 -35.62 -0.24 -0.17 16 8 C -0.20 -2.45 10.81 -39.70 -0.43 -2.88 16 9 C -0.21 -2.85 10.81 -39.70 -0.43 -3.28 16 10 C 0.00 0.06 6.58 -35.63 -0.23 -0.17 16 11 C -0.02 -0.33 5.04 -27.89 -0.14 -0.47 16 12 C -0.13 -2.17 5.68 -27.88 -0.16 -2.32 16 13 C 0.45 10.21 7.78 -10.99 -0.09 10.12 16 14 O -0.58 -15.40 15.56 5.54 0.09 -15.32 16 15 N -0.59 -14.14 5.09 -10.96 -0.06 -14.19 16 16 C -0.31 -8.75 10.16 -14.93 -0.15 -8.90 16 17 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 18 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 19 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 20 Si 0.88 19.48 27.74 -169.99 -4.71 14.77 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 24 O -0.17 -2.53 10.36 5.72 0.06 -2.47 16 25 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 29 H 0.10 1.02 7.96 -51.93 -0.41 0.61 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 33 H 0.09 1.45 8.10 -51.93 -0.42 1.03 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -32.46 321.19 -7.22 -39.67 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.26 Total: 9.89 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.95 Total: -12.17 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.72 Total: -39.20 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.15 Total: -17.79 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.46 -7.22 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.180 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds