Wall clock time and date at job start Mon Mar 30 2020 00:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 115.55879 * 2 1 4 4 C 1.53001 * 117.49797 * 145.68494 * 2 1 3 5 5 C 1.52997 * 117.50222 * 214.30789 * 2 1 3 6 6 H 1.09004 * 117.51375 * 359.97438 * 5 2 1 7 7 C 1.50704 * 117.49913 * 145.01770 * 5 2 1 8 8 C 1.34513 * 125.79064 * 240.01548 * 7 5 2 9 9 C 1.41383 * 106.83965 * 180.02562 * 8 7 5 10 10 C 1.34518 * 106.84066 * 359.97438 * 9 8 7 11 11 C 1.50694 * 125.78488 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47168 * 90.00483 * 11 10 9 13 13 C 1.50699 * 109.47500 * 179.97438 * 12 11 10 14 14 O 1.21297 * 119.99867 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00325 * 179.97438 * 13 12 11 16 16 C 1.37092 * 119.99974 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00583 * 0.02562 * 16 15 13 18 18 C 1.38955 * 120.00110 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00245 * 179.72419 * 18 16 15 20 20 Si 1.86803 * 119.99625 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47085 * 89.99660 * 20 18 16 22 22 H 1.48497 * 109.46789 * 209.99669 * 20 18 16 23 23 H 1.48490 * 109.47245 * 329.99818 * 20 18 16 24 24 O 1.34301 * 125.78708 * 60.36696 * 7 5 2 25 25 H 1.08999 * 109.46579 * 205.69434 * 1 2 3 26 26 H 1.09000 * 109.47191 * 325.68895 * 1 2 3 27 27 H 1.08993 * 109.47222 * 85.69481 * 1 2 3 28 28 H 1.08994 * 117.50307 * 0.02562 * 4 2 1 29 29 H 1.09003 * 117.49689 * 214.97981 * 4 2 1 30 30 H 1.07999 * 126.58073 * 0.06042 * 8 7 5 31 31 H 1.08001 * 126.57865 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.47553 * 330.00539 * 11 10 9 33 33 H 1.09002 * 109.46725 * 210.00027 * 11 10 9 34 34 H 1.09005 * 109.47338 * 59.99223 * 12 11 10 35 35 H 1.08999 * 109.47071 * 300.00179 * 12 11 10 36 36 H 0.97005 * 119.99841 * 0.02562 * 15 13 12 37 37 H 0.97000 * 120.00281 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 0.7651 5 6 2.2365 -1.1210 -0.7649 6 1 1.6116 -1.8589 -1.2679 7 6 3.5294 -0.7810 -1.4608 8 6 3.7640 -0.8883 -2.7809 9 6 5.0965 -0.4675 -2.9956 10 6 5.5963 -0.1277 -1.7939 11 6 6.9902 0.3811 -1.5311 12 6 7.0039 1.9076 -1.6344 13 6 8.3977 2.4165 -1.3710 14 8 9.2921 1.6351 -1.1244 15 7 8.6505 3.7397 -1.4095 16 6 9.9184 4.2027 -1.1694 17 1 10.7148 3.5070 -0.9498 18 6 10.1791 5.5669 -1.2096 19 7 11.3932 6.0111 -0.9741 20 14 8.8018 6.7702 -1.5901 21 1 8.1436 7.1852 -0.3253 22 1 9.3624 7.9646 -2.2716 23 1 7.8048 6.1173 -2.4759 24 8 4.6448 -0.3259 -0.8671 25 1 -0.3632 -0.9261 0.4456 26 1 -0.3633 0.8488 0.5793 27 1 -0.3633 0.0771 -1.0247 28 1 1.6113 -1.8586 1.2681 29 1 3.1715 -0.8751 1.2684 30 1 3.0678 -1.2297 -3.5327 31 1 5.6139 -0.4266 -3.9428 32 1 7.6753 -0.0390 -2.2675 33 1 7.3036 0.0819 -0.5309 34 1 6.3188 2.3278 -0.8981 35 1 6.6904 2.2068 -2.6346 36 1 7.9351 4.3646 -1.6064 37 1 11.5752 6.9634 -1.0017 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604544509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:58 Heat of formation + Delta-G solvation = -31.635221 kcal Electronic energy + Delta-G solvation = -18721.894532 eV Core-core repulsion = 15658.442003 eV Total energy + Delta-G solvation = -3063.452529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.59015 -40.35946 -38.66619 -36.19660 -34.88762 -33.83136 -33.68282 -30.62534 -28.97372 -27.25084 -25.16527 -22.98579 -22.68788 -21.63818 -21.26995 -20.80070 -20.19162 -18.20347 -17.45577 -17.08696 -16.72856 -16.51725 -15.79445 -15.40783 -15.31949 -14.67838 -14.56779 -14.43426 -14.04826 -13.91939 -13.71972 -13.25215 -13.12350 -13.08328 -12.90874 -12.75793 -12.43479 -12.36039 -12.04501 -11.99288 -11.55592 -11.52927 -11.00865 -10.75425 -10.51981 -10.28741 -9.09800 -8.44236 -6.05572 0.68295 1.29240 1.33742 1.43081 1.63676 1.88433 1.89868 2.20881 2.87077 2.92262 3.12197 3.47003 3.76065 3.89132 3.90951 3.98240 4.08596 4.18399 4.31106 4.38369 4.41380 4.63416 4.71204 4.80286 4.89659 4.92169 4.96588 5.01171 5.09328 5.16253 5.20183 5.24514 5.41625 5.51552 5.64170 5.91883 6.25424 6.53871 6.83217 7.34801 7.89657 8.73253 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025622 B = 0.003654 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.557443 B = 7661.203581 C = 8229.137786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.138 4.138 3 H 0.090 0.910 4 C -0.168 4.168 5 C -0.085 4.085 6 H 0.156 0.844 7 C 0.001 3.999 8 C -0.208 4.208 9 C -0.208 4.208 10 C -0.021 4.021 11 C -0.014 4.014 12 C -0.114 4.114 13 C 0.450 3.550 14 O -0.625 6.625 15 N -0.588 5.588 16 C -0.333 4.333 17 H 0.058 0.942 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.232 1.232 24 O -0.191 6.191 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.390 0.610 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.494 -10.794 -2.421 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.157 4.157 3 H 0.109 0.891 4 C -0.205 4.205 5 C -0.102 4.102 6 H 0.174 0.826 7 C -0.049 4.049 8 C -0.226 4.226 9 C -0.227 4.227 10 C -0.070 4.070 11 C -0.051 4.051 12 C -0.154 4.154 13 C 0.239 3.761 14 O -0.511 6.511 15 N -0.229 5.229 16 C -0.462 4.462 17 H 0.076 0.924 18 C -0.212 4.212 19 N -0.572 5.572 20 Si 0.783 3.217 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.155 1.155 24 O -0.089 6.089 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.100 0.900 30 H 0.188 0.812 31 H 0.181 0.819 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.226 0.774 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.715 -11.085 -1.926 28.069 hybrid contribution 0.427 0.903 -0.211 1.021 sum -25.288 -10.182 -2.136 27.345 Atomic orbital electron populations 1.21391 0.90227 1.03124 1.02822 1.22551 0.96790 0.93880 1.02431 0.89137 1.23241 1.02838 1.02089 0.92362 1.20799 0.91055 1.03959 0.94415 0.82615 1.21972 0.87490 1.03039 0.92351 1.21767 0.97416 1.07779 0.95687 1.21874 0.96191 1.06103 0.98531 1.22420 0.91400 1.05601 0.87621 1.19658 0.87419 0.93855 1.04205 1.21481 0.92621 0.95789 1.05498 1.20899 0.91609 0.82012 0.81614 1.90544 1.49428 1.56423 1.54711 1.42079 1.09625 1.06874 1.64292 1.19057 0.86797 0.92856 1.47493 0.92430 1.26116 1.00055 0.98726 0.96289 1.69794 1.22309 1.16071 1.49044 0.85388 0.78258 0.78084 0.79987 1.18175 1.19725 1.15547 1.83912 1.20429 1.66148 1.38421 0.91038 0.91400 0.91255 0.85778 0.90009 0.81175 0.81925 0.88350 0.91158 0.87966 0.86830 0.77382 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.19 71.98 0.73 -0.42 16 2 C -0.14 -2.09 6.11 -10.79 -0.07 -2.16 16 3 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.17 -2.64 9.81 30.59 0.30 -2.34 16 5 C -0.08 -1.38 5.96 -11.54 -0.07 -1.45 16 6 H 0.16 1.74 8.14 -2.38 -0.02 1.72 16 7 C 0.00 0.02 6.80 24.83 0.17 0.19 16 8 C -0.21 -4.49 10.81 22.19 0.24 -4.25 16 9 C -0.21 -5.06 10.81 22.19 0.24 -4.82 16 10 C -0.02 -0.59 6.58 24.83 0.16 -0.42 16 11 C -0.01 -0.42 5.04 29.85 0.15 -0.27 16 12 C -0.11 -3.62 5.68 29.85 0.17 -3.45 16 13 C 0.45 20.58 7.78 87.66 0.68 21.26 16 14 O -0.62 -34.68 15.56 -3.08 -0.05 -34.73 16 15 N -0.59 -28.24 5.09 -306.98 -1.56 -29.80 16 16 C -0.33 -19.70 10.16 84.04 0.85 -18.85 16 17 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 18 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 19 N -0.93 -56.39 13.96 21.66 0.30 -56.09 16 20 Si 0.96 39.09 27.74 68.60 1.90 41.00 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 23 H -0.23 -7.99 6.52 99.48 0.65 -7.35 16 24 O -0.19 -5.46 10.36 -2.46 -0.03 -5.49 16 25 H 0.07 0.53 7.90 -2.39 -0.02 0.51 16 26 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.12 1.35 8.05 -2.39 -0.02 1.33 16 29 H 0.08 1.61 7.96 -2.39 -0.02 1.59 16 30 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.10 3.07 8.10 -2.39 -0.02 3.05 16 33 H 0.07 2.39 8.10 -2.39 -0.02 2.37 16 34 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 35 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.39 15.60 5.76 -92.70 -0.53 15.07 16 37 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -75.22 321.19 5.08 -70.14 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.48 Total: 32.19 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 4.03 Total: -17.22 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.26 Total: -85.89 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.07 Total: -40.22 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.90 Total: 41.00 kcal Total: -75.22 5.08 -70.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.508 kcal (2) G-P(sol) polarization free energy of solvation -75.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds