Wall clock time and date at job start Mon Mar 30 2020 00:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.83178 * 2 1 4 4 C 1.54993 * 110.90991 * 236.35092 * 2 1 3 5 5 O 1.44382 * 103.63426 * 204.85772 * 4 2 1 6 6 C 1.43745 * 106.97352 * 39.97817 * 5 4 2 7 7 C 1.54104 * 107.29616 * 333.48894 * 6 5 4 8 8 H 1.08997 * 110.48625 * 243.21906 * 7 6 5 9 9 N 1.46498 * 110.48504 * 120.70374 * 7 6 5 10 10 C 1.39787 * 119.99600 * 150.17056 * 9 7 6 11 11 C 1.38946 * 120.00727 * 359.72381 * 10 9 7 12 12 C 1.38012 * 119.99554 * 179.77153 * 11 10 9 13 13 C 1.38900 * 120.00372 * 0.50317 * 12 11 10 14 14 O 1.35793 * 119.99072 * 179.77262 * 13 12 11 15 15 C 1.34813 * 116.99622 * 185.71888 * 14 13 12 16 16 H 1.08003 * 120.00339 * 5.43513 * 15 14 13 17 17 C 1.38624 * 119.99960 * 185.43672 * 15 14 13 18 18 N 1.31578 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99951 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47365 * 60.00447 * 19 17 15 21 21 H 1.48504 * 109.47223 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47393 * 299.99774 * 19 17 15 23 23 C 1.38894 * 120.01211 * 359.74587 * 13 12 11 24 24 C 1.38009 * 120.00700 * 0.02562 * 23 13 12 25 25 H 1.08994 * 109.47246 * 177.39265 * 1 2 3 26 26 H 1.09001 * 109.46755 * 297.39246 * 1 2 3 27 27 H 1.08996 * 109.46928 * 57.38898 * 1 2 3 28 28 H 1.08993 * 110.61884 * 86.27579 * 4 2 1 29 29 H 1.09000 * 110.61432 * 323.43671 * 4 2 1 30 30 H 1.09001 * 109.87776 * 92.91110 * 6 5 4 31 31 H 1.08997 * 109.87756 * 214.06125 * 6 5 4 32 32 H 0.96994 * 120.00551 * 330.17218 * 9 7 6 33 33 H 1.08008 * 120.00448 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.99759 * 180.23667 * 12 11 10 35 35 H 0.96999 * 119.99802 * 179.97438 * 18 17 15 36 36 H 1.08000 * 119.99574 * 179.97438 * 23 13 12 37 37 H 1.08001 * 120.00289 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8023 -1.2053 5 8 3.3939 -1.2177 -0.7648 6 6 3.2731 -1.5914 0.6179 7 6 2.0866 -0.8017 1.2040 8 1 2.4278 -0.1284 1.9903 9 7 1.0668 -1.7174 1.7213 10 6 0.2594 -1.3298 2.7946 11 6 0.4279 -0.0785 3.3746 12 6 -0.3725 0.3058 4.4312 13 6 -1.3394 -0.5625 4.9216 14 8 -2.1237 -0.1859 5.9643 15 6 -2.9596 -1.1158 6.4683 16 1 -2.9221 -2.1311 6.1020 17 6 -3.8674 -0.7688 7.4569 18 7 -3.9135 0.4682 7.9028 19 14 -5.0261 -2.0571 8.1548 20 1 -4.2350 -3.1563 8.7641 21 1 -5.8908 -1.4362 9.1902 22 1 -5.8741 -2.6028 7.0647 23 6 -1.5046 -1.8154 4.3455 24 6 -0.7077 -2.1983 3.2858 25 1 -0.3633 -1.0265 -0.0467 26 1 -0.3633 0.4728 0.9125 27 1 -0.3633 0.5538 -0.8656 28 1 2.1582 -0.1666 -2.0875 29 1 1.4546 -1.6689 -1.4104 30 1 3.0814 -2.6615 0.6972 31 1 4.1883 -1.3362 1.1521 32 1 0.9518 -2.5925 1.3192 33 1 1.1825 0.5952 2.9959 34 1 -0.2441 1.2799 4.8795 35 1 -4.5490 0.7111 8.5943 36 1 -2.2563 -2.4904 4.7273 37 1 -0.8359 -3.1727 2.8381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710898020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:55 Heat of formation + Delta-G solvation = -38.209396 kcal Electronic energy + Delta-G solvation = -19510.672718 eV Core-core repulsion = 16446.935112 eV Total energy + Delta-G solvation = -3063.737606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.10493 -38.81959 -36.90647 -34.56365 -32.45300 -31.93095 -30.27118 -29.31596 -26.80052 -26.22826 -25.02151 -23.09721 -21.79428 -21.10681 -19.80758 -17.82478 -17.37155 -16.71438 -16.44357 -15.76081 -15.17431 -14.84954 -14.41101 -14.05030 -13.82586 -13.63992 -13.45786 -13.12014 -12.69715 -12.49336 -12.36227 -11.87796 -11.68501 -11.55242 -11.28418 -11.16022 -11.05467 -10.90467 -10.86932 -10.55202 -10.33401 -9.89206 -9.31297 -9.17989 -8.47160 -8.20075 -6.43710 -6.34450 -3.91546 2.17031 2.53199 3.17844 3.18500 3.21314 3.61285 3.85822 4.04622 4.41267 4.62806 4.70380 4.75775 4.99063 5.07932 5.19211 5.37150 5.42241 5.47508 5.54754 5.60754 5.62843 5.70153 5.78857 5.91354 6.06110 6.19780 6.21859 6.35544 6.48173 6.62861 6.83544 6.88831 7.10302 7.28998 7.42024 7.60676 7.92088 8.09915 8.17159 9.11655 9.85766 10.84453 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049387 B = 0.003788 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.810769 B = 7389.253768 C = 7520.560010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.143 4.143 3 H 0.085 0.915 4 C 0.050 3.950 5 O -0.380 6.380 6 C 0.040 3.960 7 C 0.129 3.871 8 H 0.095 0.905 9 N -0.746 5.746 10 C 0.125 3.875 11 C -0.145 4.145 12 C -0.151 4.151 13 C 0.114 3.886 14 O -0.187 6.187 15 C -0.388 4.388 16 H 0.087 0.913 17 C 0.037 3.963 18 N -0.868 5.868 19 Si 0.937 3.063 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.271 1.271 23 C -0.190 4.190 24 C -0.141 4.141 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.390 0.610 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.268 0.732 36 H 0.127 0.873 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.815 -3.437 -14.273 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.164 4.164 3 H 0.103 0.897 4 C -0.026 4.026 5 O -0.299 6.299 6 C -0.037 4.037 7 C 0.021 3.979 8 H 0.113 0.887 9 N -0.382 5.382 10 C 0.028 3.972 11 C -0.167 4.167 12 C -0.171 4.171 13 C 0.061 3.939 14 O -0.092 6.092 15 C -0.464 4.464 16 H 0.105 0.895 17 C -0.166 4.166 18 N -0.505 5.505 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.197 1.197 23 C -0.210 4.210 24 C -0.163 4.163 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.224 0.776 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.946 -2.947 -14.084 17.492 hybrid contribution -0.866 -1.055 0.283 1.393 sum 9.080 -4.002 -13.801 16.998 Atomic orbital electron populations 1.21564 0.92960 1.02341 1.01949 1.23239 0.97869 0.99852 0.95416 0.89662 1.23643 0.83921 0.97650 0.97406 1.88872 1.29528 1.86378 1.25100 1.23492 0.98816 0.98874 0.82567 1.22104 0.87960 0.91982 0.95855 0.88724 1.44207 1.39396 1.17949 1.36623 1.17324 0.94418 0.94432 0.91039 1.20188 1.01901 0.95529 0.99047 1.20023 0.97585 0.99979 0.99478 1.19261 0.92461 0.92721 0.89413 1.83997 1.46798 1.38653 1.39784 1.21178 1.14903 0.90590 1.19775 0.89538 1.25214 0.97458 0.97270 0.96680 1.70036 1.35545 1.17121 1.27774 0.85842 0.79602 0.79524 0.78785 1.19657 1.20400 1.19678 1.20988 1.02923 0.97961 0.99101 1.20221 0.98017 0.98636 0.99400 0.92200 0.91372 0.93399 0.89260 0.92268 0.91901 0.89153 0.77555 0.87142 0.86562 0.92214 0.85539 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 8.19 37.16 0.30 -1.17 16 2 C -0.14 -1.46 3.71 -88.52 -0.33 -1.79 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.05 0.48 7.17 38.21 0.27 0.76 16 5 O -0.38 -4.30 11.52 -35.23 -0.41 -4.71 16 6 C 0.04 0.40 7.48 37.73 0.28 0.68 16 7 C 0.13 1.39 3.19 -66.30 -0.21 1.18 16 8 H 0.09 1.07 6.13 -51.93 -0.32 0.75 16 9 N -0.75 -9.17 3.85 -50.55 -0.19 -9.37 16 10 C 0.13 2.01 5.67 -83.70 -0.47 1.54 16 11 C -0.14 -2.49 8.31 -39.40 -0.33 -2.81 16 12 C -0.15 -3.13 9.98 -39.42 -0.39 -3.53 16 13 C 0.11 2.74 6.65 -39.09 -0.26 2.48 16 14 O -0.19 -5.39 9.76 -0.04 0.00 -5.39 16 15 C -0.39 -10.95 9.44 30.87 0.29 -10.66 16 16 H 0.09 2.25 5.29 -52.48 -0.28 1.98 16 17 C 0.04 1.03 5.49 -17.52 -0.10 0.93 16 18 N -0.87 -25.85 13.67 55.48 0.76 -25.09 16 19 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.19 -4.07 9.13 -39.42 -0.36 -4.43 16 24 C -0.14 -2.49 9.89 -39.40 -0.39 -2.88 16 25 H 0.06 0.70 7.41 -51.93 -0.38 0.31 16 26 H 0.07 0.92 6.73 -51.93 -0.35 0.57 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 30 H 0.06 0.59 7.70 -51.93 -0.40 0.19 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 4.29 8.45 -40.82 -0.35 3.95 16 33 H 0.11 1.63 6.09 -52.48 -0.32 1.31 16 34 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.13 2.74 5.70 -52.49 -0.30 2.44 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 302.47 15.07 4.56 4.56 Total: -1.00 -30.76 302.47 -6.78 -37.54 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.78 Total: 6.40 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.69 Total: -19.69 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.56 Total: -34.46 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.41 Total: -10.11 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.76 -6.78 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710898020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.671 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds