Wall clock time and date at job start Mon Mar 30 2020 00:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.83178 * 2 1 4 4 C 1.54993 * 110.90991 * 236.35092 * 2 1 3 5 5 O 1.44382 * 103.63426 * 204.85772 * 4 2 1 6 6 C 1.43745 * 106.97352 * 39.97817 * 5 4 2 7 7 C 1.54104 * 107.29616 * 333.48894 * 6 5 4 8 8 H 1.08997 * 110.48625 * 243.21906 * 7 6 5 9 9 N 1.46498 * 110.48504 * 120.70374 * 7 6 5 10 10 C 1.39787 * 119.99600 * 150.17056 * 9 7 6 11 11 C 1.38946 * 120.00727 * 359.72381 * 10 9 7 12 12 C 1.38012 * 119.99554 * 179.77153 * 11 10 9 13 13 C 1.38900 * 120.00372 * 0.50317 * 12 11 10 14 14 O 1.35793 * 119.99072 * 179.77262 * 13 12 11 15 15 C 1.34813 * 116.99622 * 185.71888 * 14 13 12 16 16 H 1.08003 * 120.00339 * 5.43513 * 15 14 13 17 17 C 1.38624 * 119.99960 * 185.43672 * 15 14 13 18 18 N 1.31578 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99951 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47365 * 60.00447 * 19 17 15 21 21 H 1.48504 * 109.47223 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47393 * 299.99774 * 19 17 15 23 23 C 1.38894 * 120.01211 * 359.74587 * 13 12 11 24 24 C 1.38009 * 120.00700 * 0.02562 * 23 13 12 25 25 H 1.08994 * 109.47246 * 177.39265 * 1 2 3 26 26 H 1.09001 * 109.46755 * 297.39246 * 1 2 3 27 27 H 1.08996 * 109.46928 * 57.38898 * 1 2 3 28 28 H 1.08993 * 110.61884 * 86.27579 * 4 2 1 29 29 H 1.09000 * 110.61432 * 323.43671 * 4 2 1 30 30 H 1.09001 * 109.87776 * 92.91110 * 6 5 4 31 31 H 1.08997 * 109.87756 * 214.06125 * 6 5 4 32 32 H 0.96994 * 120.00551 * 330.17218 * 9 7 6 33 33 H 1.08008 * 120.00448 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.99759 * 180.23667 * 12 11 10 35 35 H 0.96999 * 119.99802 * 179.97438 * 18 17 15 36 36 H 1.08000 * 119.99574 * 179.97438 * 23 13 12 37 37 H 1.08001 * 120.00289 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0187 0.0000 4 6 2.0831 -0.8023 -1.2053 5 8 3.3939 -1.2177 -0.7648 6 6 3.2731 -1.5914 0.6179 7 6 2.0866 -0.8017 1.2040 8 1 2.4278 -0.1284 1.9903 9 7 1.0668 -1.7174 1.7213 10 6 0.2594 -1.3298 2.7946 11 6 0.4279 -0.0785 3.3746 12 6 -0.3725 0.3058 4.4312 13 6 -1.3394 -0.5625 4.9216 14 8 -2.1237 -0.1859 5.9643 15 6 -2.9596 -1.1158 6.4683 16 1 -2.9221 -2.1311 6.1020 17 6 -3.8674 -0.7688 7.4569 18 7 -3.9135 0.4682 7.9028 19 14 -5.0261 -2.0571 8.1548 20 1 -4.2350 -3.1563 8.7641 21 1 -5.8908 -1.4362 9.1902 22 1 -5.8741 -2.6028 7.0647 23 6 -1.5046 -1.8154 4.3455 24 6 -0.7077 -2.1983 3.2858 25 1 -0.3633 -1.0265 -0.0467 26 1 -0.3633 0.4728 0.9125 27 1 -0.3633 0.5538 -0.8656 28 1 2.1582 -0.1666 -2.0875 29 1 1.4546 -1.6689 -1.4104 30 1 3.0814 -2.6615 0.6972 31 1 4.1883 -1.3362 1.1521 32 1 0.9518 -2.5925 1.3192 33 1 1.1825 0.5952 2.9959 34 1 -0.2441 1.2799 4.8795 35 1 -4.5490 0.7111 8.5943 36 1 -2.2563 -2.4904 4.7273 37 1 -0.8359 -3.1727 2.8381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710898020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:55 Heat of formation + Delta-G solvation = -58.707976 kcal Electronic energy + Delta-G solvation = -19511.561603 eV Core-core repulsion = 16446.935112 eV Total energy + Delta-G solvation = -3064.626492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15436 -40.33786 -38.46299 -35.80715 -34.16417 -33.23966 -31.79782 -30.45939 -28.23222 -27.17828 -26.82631 -24.27329 -23.01021 -22.60012 -20.92268 -19.58106 -18.89098 -18.07441 -17.46802 -16.90389 -16.31429 -16.07509 -15.98538 -15.41966 -15.30543 -15.09259 -14.79052 -14.29755 -14.17267 -14.05539 -13.44355 -13.30348 -13.11902 -12.98539 -12.63616 -12.42919 -12.35537 -12.16052 -12.04544 -11.87217 -11.63380 -11.11563 -10.87707 -10.67468 -10.17123 -9.75768 -8.38766 -7.93146 -6.02516 0.60008 0.94368 1.36965 1.48034 1.52932 2.23090 2.54891 2.91543 3.02187 3.25783 3.61986 3.67920 3.83265 3.92587 4.10376 4.17229 4.28733 4.29939 4.58400 4.60224 4.62043 4.73351 4.77635 4.84943 4.91287 4.97348 5.05822 5.12934 5.20431 5.30135 5.41604 5.48565 5.56654 5.79724 5.84191 6.00324 6.11895 6.60323 6.99822 7.07122 7.94286 8.85483 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049387 B = 0.003788 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.810769 B = 7389.253768 C = 7520.560010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.138 4.138 3 H 0.093 0.907 4 C 0.052 3.948 5 O -0.395 6.395 6 C 0.044 3.956 7 C 0.123 3.877 8 H 0.095 0.905 9 N -0.730 5.730 10 C 0.161 3.839 11 C -0.141 4.141 12 C -0.156 4.156 13 C 0.062 3.938 14 O -0.243 6.243 15 C -0.406 4.406 16 H 0.097 0.903 17 C -0.028 4.028 18 N -0.927 5.927 19 Si 1.015 2.985 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.193 4.193 24 C -0.144 4.144 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.403 0.597 33 H 0.141 0.859 34 H 0.111 0.889 35 H 0.270 0.730 36 H 0.117 0.883 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.272 -5.227 -16.731 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 H 0.111 0.889 4 C -0.025 4.025 5 O -0.314 6.314 6 C -0.034 4.034 7 C 0.016 3.984 8 H 0.113 0.887 9 N -0.365 5.365 10 C 0.061 3.939 11 C -0.164 4.164 12 C -0.176 4.176 13 C 0.012 3.988 14 O -0.151 6.151 15 C -0.483 4.483 16 H 0.115 0.885 17 C -0.224 4.224 18 N -0.567 5.567 19 Si 0.835 3.165 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.213 4.213 24 C -0.166 4.166 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.239 0.761 33 H 0.159 0.841 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.469 -4.768 -16.629 20.756 hybrid contribution -1.027 -0.505 0.705 1.344 sum 10.442 -5.274 -15.925 19.759 Atomic orbital electron populations 1.21518 0.93740 1.01987 1.01335 1.23190 0.96988 1.00348 0.95357 0.88900 1.23717 0.83317 0.97973 0.97450 1.88875 1.30362 1.86527 1.25617 1.23507 0.98649 0.99091 0.82134 1.22285 0.87914 0.91983 0.96222 0.88693 1.44248 1.38497 1.18776 1.34951 1.17377 0.92918 0.93226 0.90376 1.20424 1.01643 0.96527 0.97757 1.20223 0.97459 0.99542 1.00333 1.19762 0.93851 0.94873 0.90287 1.83939 1.48800 1.39855 1.42519 1.21695 1.15057 0.91319 1.20209 0.88520 1.26511 0.99198 0.99802 0.96879 1.70195 1.37337 1.19783 1.29340 0.84693 0.77089 0.76519 0.78190 1.18298 1.19835 1.18250 1.21040 1.03389 0.96838 1.00042 1.20472 0.97493 1.00308 0.98359 0.92552 0.93812 0.92094 0.87865 0.91702 0.91095 0.87945 0.76114 0.84131 0.87112 0.92154 0.86538 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.19 71.98 0.59 -1.92 16 2 C -0.14 -2.32 3.71 -9.43 -0.03 -2.35 16 3 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.05 0.79 7.17 72.66 0.52 1.31 16 5 O -0.39 -7.46 11.52 -148.98 -1.72 -9.18 16 6 C 0.04 0.69 7.48 72.36 0.54 1.23 16 7 C 0.12 2.18 3.19 46.05 0.15 2.33 16 8 H 0.10 1.76 6.13 -2.39 -0.01 1.74 16 9 N -0.73 -15.06 3.85 -313.84 -1.21 -16.27 16 10 C 0.16 4.74 5.67 38.21 0.22 4.95 16 11 C -0.14 -4.62 8.31 22.39 0.19 -4.43 16 12 C -0.16 -6.61 9.98 22.37 0.22 -6.39 16 13 C 0.06 3.10 6.65 22.59 0.15 3.25 16 14 O -0.24 -14.92 9.76 -23.04 -0.22 -15.14 16 15 C -0.41 -24.11 9.44 67.91 0.64 -23.47 16 16 H 0.10 5.25 5.29 -2.91 -0.02 5.24 16 17 C -0.03 -1.61 5.49 84.82 0.47 -1.14 16 18 N -0.93 -58.18 13.67 21.61 0.30 -57.88 16 19 Si 1.02 43.70 29.55 68.60 2.03 45.73 16 20 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 23 C -0.19 -8.38 9.13 22.37 0.20 -8.18 16 24 C -0.14 -4.80 9.89 22.39 0.22 -4.58 16 25 H 0.06 1.13 7.41 -2.39 -0.02 1.11 16 26 H 0.04 1.08 6.73 -2.39 -0.02 1.06 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 0.94 8.02 -2.39 -0.02 0.92 16 30 H 0.07 1.03 7.70 -2.39 -0.02 1.01 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.40 6.98 8.45 -92.71 -0.78 6.20 16 33 H 0.14 3.73 6.09 -2.91 -0.02 3.71 16 34 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 35 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.12 5.18 5.70 -2.91 -0.02 5.16 16 37 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -71.34 302.47 3.55 -67.79 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.31 Total: 24.34 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 4.07 Total: -39.39 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -0.91 Total: -74.15 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.94 Total: -24.32 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -71.34 3.55 -67.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710898020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.079 kcal (2) G-P(sol) polarization free energy of solvation -71.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds