Wall clock time and date at job start Sun Mar 29 2020 23:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00607 * 2 1 4 4 H 1.09000 * 109.46426 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47122 * 239.99940 * 3 2 1 6 6 O 1.42892 * 109.47249 * 304.99365 * 5 3 2 7 7 N 1.46901 * 109.46856 * 119.99524 * 3 2 1 8 8 C 1.46899 * 110.99512 * 205.00141 * 7 3 2 9 9 C 1.50705 * 109.47196 * 180.02562 * 8 7 3 10 10 C 1.38305 * 119.93016 * 269.73227 * 9 8 7 11 11 C 1.38099 * 120.06238 * 179.72283 * 10 9 8 12 12 C 1.38873 * 119.93625 * 0.56464 * 11 10 9 13 13 O 1.35747 * 120.07083 * 179.68259 * 12 11 10 14 14 C 1.34837 * 116.99968 * 174.49007 * 13 12 11 15 15 H 1.08003 * 119.99889 * 5.05472 * 14 13 12 16 16 C 1.38658 * 120.00028 * 185.05741 * 14 13 12 17 17 N 1.31554 * 119.99574 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00146 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47045 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47144 * 120.00012 * 18 16 14 21 21 H 1.48494 * 109.47233 * 240.00420 * 18 16 14 22 22 C 1.38880 * 119.85958 * 359.70905 * 12 11 10 23 23 C 1.38097 * 119.93194 * 359.97438 * 22 12 11 24 24 H 1.08001 * 119.99568 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.00210 * 179.97438 * 1 2 3 26 26 H 1.08008 * 119.99773 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46603 * 184.99870 * 5 3 2 28 28 H 1.09002 * 109.47198 * 64.99896 * 5 3 2 29 29 H 0.96700 * 114.00750 * 180.02562 * 6 5 3 30 30 H 1.00897 * 111.00454 * 328.95862 * 7 3 2 31 31 H 1.08999 * 109.48053 * 300.00362 * 8 7 3 32 32 H 1.09000 * 109.47361 * 60.00765 * 8 7 3 33 33 H 1.07995 * 119.96460 * 359.97096 * 10 9 8 34 34 H 1.08010 * 120.02989 * 180.27108 * 11 10 9 35 35 H 0.97010 * 119.99386 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.03325 * 179.97438 * 22 12 11 37 37 H 1.08001 * 119.96758 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1335 -0.0005 5 6 2.9433 1.3860 -1.2492 6 8 3.7920 0.2380 -1.3093 7 7 2.9081 1.3828 1.1995 8 6 3.1826 2.7800 1.5603 9 6 4.0500 2.8197 2.7921 10 6 3.4669 2.8580 4.0456 11 6 4.2591 2.8887 5.1764 12 6 5.6424 2.8929 5.0536 13 8 6.4237 2.9295 6.1631 14 6 7.7546 2.8162 5.9786 15 1 8.1603 2.7846 4.9782 16 6 8.6022 2.7401 7.0733 17 7 8.1079 2.7780 8.2918 18 14 10.4459 2.5825 6.8178 19 1 10.7440 2.5618 5.3631 20 1 11.1335 3.7385 7.4471 21 1 10.9259 1.3224 7.4398 22 6 6.2248 2.8601 3.7932 23 6 5.4273 2.8229 2.6664 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 3.5542 2.2876 -1.2055 28 1 2.3116 1.4178 -2.1370 29 1 4.3791 0.2227 -2.0775 30 1 2.4876 0.8861 1.9706 31 1 3.6990 3.2734 0.7368 32 1 2.2430 3.2950 1.7605 33 1 2.3912 2.8599 4.1403 34 1 3.8032 2.9141 6.1553 35 1 8.7010 2.7252 9.0577 36 1 7.3003 2.8637 3.6944 37 1 5.8795 2.7970 1.6860 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717530841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:52 Heat of formation + Delta-G solvation = -29.022232 kcal Electronic energy + Delta-G solvation = -18832.795981 eV Core-core repulsion = 15769.456760 eV Total energy + Delta-G solvation = -3063.339221 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.10322 -38.17452 -36.67010 -35.35774 -33.17911 -32.19049 -30.14250 -29.74955 -27.67922 -25.57735 -24.29836 -22.06096 -21.92116 -20.45546 -19.75675 -17.95159 -17.42189 -16.92371 -16.43640 -14.96553 -14.86168 -14.68520 -14.45690 -14.32675 -13.80322 -13.59529 -13.53714 -13.15903 -12.70936 -12.67556 -12.54705 -11.87303 -11.78403 -11.50228 -11.27010 -10.97221 -10.73876 -10.65538 -10.51695 -10.40032 -10.00698 -9.63695 -9.29547 -8.81371 -8.29903 -8.12841 -7.15199 -6.42989 -4.01534 2.03772 2.26050 2.35286 3.14029 3.15899 3.21415 3.98886 4.16275 4.29320 4.65817 4.70415 4.97552 5.11945 5.13355 5.27866 5.31452 5.39649 5.46880 5.48065 5.51324 5.75475 5.81370 5.85187 5.92611 6.24646 6.45189 6.46439 6.50514 6.73422 6.94454 7.05291 7.16142 7.25213 7.43232 7.46895 7.52781 7.64123 7.86462 8.02630 9.03035 9.73439 10.75222 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031801 B = 0.003609 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.253781 B = 7755.855037 C = 8238.334098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.138 4.138 3 C 0.111 3.889 4 H 0.056 0.944 5 C 0.092 3.908 6 O -0.554 6.554 7 N -0.667 5.667 8 C 0.117 3.883 9 C -0.184 4.184 10 C -0.069 4.069 11 C -0.194 4.194 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.235 4.235 23 C -0.047 4.047 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.371 0.629 30 H 0.345 0.655 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.269 0.731 36 H 0.126 0.874 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 -1.849 -16.913 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.156 4.156 3 C 0.002 3.998 4 H 0.073 0.927 5 C 0.013 3.987 6 O -0.358 6.358 7 N -0.300 5.300 8 C -0.011 4.011 9 C -0.185 4.185 10 C -0.087 4.087 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.254 4.254 23 C -0.066 4.066 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.138 0.862 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.216 0.784 30 H 0.164 0.836 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.125 0.875 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.344 -2.037 -16.216 19.341 hybrid contribution 0.377 0.351 -0.305 0.599 sum -9.967 -1.687 -16.520 19.368 Atomic orbital electron populations 1.23884 0.95873 1.01798 1.01870 1.22959 0.95212 0.98929 0.98542 1.20785 0.92294 0.94965 0.91787 0.92677 1.22127 0.92163 0.88550 0.95829 1.86597 1.55413 1.43774 1.49989 1.60574 1.48833 1.14030 1.06515 1.20704 0.96624 0.88272 0.95500 1.19081 0.93700 1.12647 0.93100 1.20473 0.97897 0.98732 0.91643 1.20162 0.91024 1.11618 0.98520 1.19392 0.91033 0.92162 0.87185 1.83976 1.18705 1.78209 1.27342 1.21390 0.78527 1.52148 0.94641 0.88990 1.25293 1.00391 0.96584 0.94298 1.70055 1.35776 1.46235 0.97782 0.85644 0.80682 0.78251 0.78838 1.19071 1.20185 1.20130 1.21169 1.00510 1.11659 0.92111 1.20558 0.92648 0.96196 0.97183 0.88891 0.88247 0.86221 0.93616 0.94159 0.78369 0.83578 0.91365 0.95531 0.87520 0.86630 0.92106 0.85604 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 14.32 29.02 0.42 -1.31 16 2 C -0.14 -1.44 8.31 -36.02 -0.30 -1.74 16 3 C 0.11 1.22 2.77 -68.86 -0.19 1.03 16 4 H 0.06 0.55 7.44 -51.93 -0.39 0.16 16 5 C 0.09 0.93 6.79 37.16 0.25 1.18 16 6 O -0.55 -6.23 13.01 -35.23 -0.46 -6.69 16 7 N -0.67 -8.94 6.24 -109.22 -0.68 -9.63 16 8 C 0.12 1.61 5.61 -4.97 -0.03 1.58 16 9 C -0.18 -3.19 5.40 -104.57 -0.56 -3.76 16 10 C -0.07 -1.24 9.69 -39.61 -0.38 -1.62 16 11 C -0.19 -4.17 9.99 -39.40 -0.39 -4.56 16 12 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 13 O -0.18 -5.19 9.76 0.04 0.00 -5.19 16 14 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 15 H 0.09 2.43 5.20 -52.48 -0.27 2.15 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.58 13.67 55.48 0.76 -24.83 16 18 Si 0.94 20.78 29.55 -169.99 -5.02 15.75 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 C -0.24 -5.25 9.17 -39.40 -0.36 -5.61 16 23 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 24 H 0.09 0.74 7.83 -52.49 -0.41 0.32 16 25 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 26 H 0.12 1.39 7.96 -52.48 -0.42 0.97 16 27 H 0.05 0.46 7.35 -51.93 -0.38 0.07 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.37 2.53 9.12 45.56 0.42 2.94 16 30 H 0.35 4.73 8.34 -39.29 -0.33 4.40 16 31 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 32 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.13 2.82 5.64 -52.48 -0.30 2.53 16 37 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -32.01 319.81 -6.71 -38.72 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.12 Total: 9.37 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -2.00 Total: -22.33 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.08 Total: -34.45 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.46 Total: -11.88 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.01 -6.71 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717530841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.696 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds