Wall clock time and date at job start Mon Mar 30 2020 00:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00017 * 2 1 4 4 H 1.09007 * 109.46525 * 329.99161 * 3 2 1 5 5 C 1.52991 * 109.47506 * 89.99228 * 3 2 1 6 6 C 1.53001 * 109.46986 * 209.99583 * 3 2 1 7 7 C 1.50701 * 109.46897 * 64.99781 * 6 3 2 8 8 O 1.21279 * 120.00389 * 359.97438 * 7 6 3 9 9 N 1.34783 * 119.99699 * 179.97438 * 7 6 3 10 10 C 1.39240 * 119.99664 * 185.35701 * 9 7 6 11 11 C 1.39477 * 119.83016 * 212.90730 * 10 9 7 12 12 C 1.36384 * 120.16790 * 179.71934 * 11 10 9 13 13 C 1.40866 * 119.82239 * 0.56070 * 12 11 10 14 14 C 1.41154 * 120.16043 * 179.69812 * 13 12 11 15 15 H 1.07996 * 120.00117 * 155.98462 * 14 13 12 16 16 C 1.39904 * 120.00332 * 335.98140 * 14 13 12 17 17 N 1.30882 * 119.99809 * 340.79291 * 16 14 13 18 18 Si 1.86796 * 120.00379 * 160.79245 * 16 14 13 19 19 H 1.48496 * 109.47253 * 94.72965 * 18 16 14 20 20 H 1.48504 * 109.47353 * 214.73090 * 18 16 14 21 21 H 1.48499 * 109.47275 * 334.72639 * 18 16 14 22 22 C 1.40865 * 119.67822 * 359.71619 * 13 12 11 23 23 C 1.36380 * 119.82450 * 0.02562 * 22 13 12 24 24 H 1.09006 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47906 * 300.00653 * 1 2 3 26 26 H 1.09002 * 109.47014 * 60.00757 * 1 2 3 27 27 H 1.09006 * 109.47203 * 179.97438 * 5 3 2 28 28 H 1.08999 * 109.47641 * 300.00442 * 5 3 2 29 29 H 1.09007 * 109.47283 * 60.00398 * 5 3 2 30 30 H 1.08991 * 109.47023 * 304.99745 * 6 3 2 31 31 H 1.08997 * 109.47023 * 184.99282 * 6 3 2 32 32 H 0.97000 * 119.99832 * 5.36138 * 9 7 6 33 33 H 1.08001 * 119.92078 * 0.02562 * 11 10 9 34 34 H 1.08000 * 120.08884 * 180.27603 * 12 11 10 35 35 H 0.96995 * 120.00065 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.09188 * 179.97438 * 22 13 12 37 37 H 1.07995 * 119.91302 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5140 5 6 2.2175 1.7715 1.4424 6 6 3.3589 1.2632 -0.7212 7 6 3.1416 0.9234 -2.1732 8 8 2.0187 0.7333 -2.5901 9 7 4.1953 0.8308 -3.0086 10 6 3.9883 0.6276 -4.3704 11 6 4.9069 -0.1190 -5.1080 12 6 4.7079 -0.3271 -6.4411 13 6 3.5772 0.2241 -7.0751 14 6 3.3676 0.0185 -8.4558 15 1 2.3707 0.0825 -8.8661 16 6 4.4513 -0.2683 -9.2929 17 7 5.6693 0.0155 -8.9069 18 14 4.1600 -1.0561 -10.9613 19 1 4.0849 0.0010 -12.0015 20 1 5.2795 -1.9802 -11.2747 21 1 2.8842 -1.8156 -10.9342 22 6 2.6569 0.9818 -6.3247 23 6 2.8666 1.1769 -4.9913 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3635 0.5139 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 2.6613 2.7671 1.4423 28 1 1.2567 1.8016 1.9562 29 1 2.8828 1.0777 1.9564 30 1 3.9930 0.5052 -0.2616 31 1 3.8426 2.2369 -0.6444 32 1 5.0978 0.9057 -2.6610 33 1 5.7755 -0.5374 -4.6214 34 1 5.4178 -0.9091 -7.0102 35 1 6.4207 -0.1836 -9.4870 36 1 1.7879 1.4078 -6.8040 37 1 2.1622 1.7579 -4.4147 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749470358.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:27 Heat of formation + Delta-G solvation = -69.913441 kcal Electronic energy + Delta-G solvation = -19258.927261 eV Core-core repulsion = 16193.814864 eV Total energy + Delta-G solvation = -3065.112397 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73429 -38.07986 -36.98414 -34.36935 -33.05236 -32.64509 -29.58141 -29.19621 -27.82896 -26.47382 -24.75905 -22.10430 -21.24886 -20.55784 -19.48907 -17.36283 -16.90421 -16.81795 -16.18692 -15.23081 -15.03600 -14.89271 -14.58453 -13.92276 -13.50123 -13.16898 -12.86790 -12.68111 -12.64268 -12.14076 -12.08975 -11.99635 -11.69420 -11.40304 -11.35474 -11.08912 -10.92365 -10.72104 -10.50910 -10.07078 -9.67080 -9.54051 -9.39123 -9.08029 -8.64945 -7.51500 -6.96180 -6.76176 -4.26094 2.61396 3.02827 3.07706 3.12851 3.14665 3.44473 3.76971 3.89229 3.94106 4.63917 4.76467 4.93293 5.12259 5.33676 5.37456 5.45726 5.50829 5.58692 5.63756 5.74119 5.83791 5.88067 6.04512 6.23179 6.44812 6.82011 6.97105 7.06454 7.22080 7.29563 7.32635 7.62088 7.76701 7.93891 8.06117 8.30238 8.36525 8.61688 8.84874 8.90398 9.04642 10.17448 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.047160 B = 0.003758 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.581935 B = 7448.965135 C = 7778.953861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.376 6.376 3 C 0.101 3.899 4 H 0.068 0.932 5 C -0.174 4.174 6 C -0.140 4.140 7 C 0.500 3.500 8 O -0.526 6.526 9 N -0.655 5.655 10 C -0.005 4.005 11 C -0.114 4.114 12 C -0.155 4.155 13 C 0.106 3.894 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.792 5.792 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.217 4.217 23 C -0.076 4.076 24 H 0.080 0.920 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.394 0.606 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.280 0.720 36 H 0.094 0.906 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 2.509 14.249 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.294 6.294 3 C 0.042 3.958 4 H 0.086 0.914 5 C -0.232 4.232 6 C -0.180 4.180 7 C 0.286 3.714 8 O -0.403 6.403 9 N -0.298 5.298 10 C -0.097 4.097 11 C -0.134 4.134 12 C -0.175 4.175 13 C 0.103 3.897 14 C -0.489 4.489 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.237 4.237 23 C -0.096 4.096 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.227 0.773 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.067 2.224 13.884 14.212 hybrid contribution 0.361 -0.059 -0.572 0.679 sum -1.706 2.165 13.312 13.595 Atomic orbital electron populations 1.22678 0.81201 1.02354 0.99579 1.87890 1.19671 1.26959 1.94901 1.21759 0.93823 0.85894 0.94295 0.91409 1.22305 1.02385 1.01535 0.96940 1.21830 0.98783 1.03976 0.93394 1.20418 0.85334 0.78147 0.87454 1.90669 1.23356 1.48703 1.77526 1.43038 1.08497 1.71431 1.06832 1.17158 1.01259 1.09723 0.81543 1.20220 0.98264 0.99691 0.95223 1.20876 1.00726 1.03508 0.92394 1.17642 0.90730 0.88252 0.93069 1.19551 0.94697 1.42070 0.92534 0.90382 1.25920 0.94555 0.93145 1.00523 1.69855 0.99802 1.34487 1.37610 0.86332 0.79440 0.79795 0.81371 1.19594 1.20037 1.18381 1.20645 1.02822 1.06444 0.93822 1.20230 0.96204 0.98884 0.94302 0.90141 0.94943 0.93424 0.91584 0.92350 0.91776 0.88479 0.88058 0.77297 0.89235 0.86229 0.90901 0.88791 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.82 101.05 1.09 1.57 16 2 O -0.38 -5.57 9.58 -49.66 -0.48 -6.04 16 3 C 0.10 1.25 2.27 -26.74 -0.06 1.19 16 4 H 0.07 0.89 7.60 -51.93 -0.39 0.50 16 5 C -0.17 -1.56 9.53 37.15 0.35 -1.21 16 6 C -0.14 -1.69 5.41 -27.88 -0.15 -1.84 16 7 C 0.50 8.81 7.43 -10.98 -0.08 8.73 16 8 O -0.53 -11.39 13.07 -8.87 -0.12 -11.51 16 9 N -0.65 -11.80 5.31 -9.74 -0.05 -11.85 16 10 C 0.00 -0.11 6.29 -83.57 -0.53 -0.63 16 11 C -0.11 -2.66 9.89 -39.79 -0.39 -3.06 16 12 C -0.16 -4.06 8.65 -39.26 -0.34 -4.40 16 13 C 0.11 2.88 5.58 -106.80 -0.60 2.29 16 14 C -0.46 -12.36 9.03 -37.85 -0.34 -12.70 16 15 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 16 C 0.08 1.92 5.11 -17.33 -0.09 1.83 16 17 N -0.79 -20.37 11.00 55.55 0.61 -19.76 16 18 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.96 16 22 C -0.22 -5.63 9.74 -39.26 -0.38 -6.02 16 23 C -0.08 -1.87 8.57 -39.79 -0.34 -2.21 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.03 0.32 7.87 -51.93 -0.41 -0.09 16 26 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.49 7.87 -51.93 -0.41 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.39 5.58 8.81 -40.82 -0.36 5.22 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.12 3.19 6.17 -52.49 -0.32 2.87 16 35 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 36 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 37 H 0.10 2.42 6.38 -52.49 -0.33 2.08 16 LS Contribution 314.02 15.07 4.73 4.73 Total: -1.00 -31.29 314.02 -7.35 -38.64 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.16 Total: 8.58 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.85 Total: -16.47 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.56 Total: -31.61 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.59 Total: -17.55 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.29 -7.35 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749470358.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.278 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds