Wall clock time and date at job start Mon Mar 30 2020 00:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47564 * 2 1 4 4 C 1.53003 * 109.46949 * 240.00065 * 2 1 3 5 5 C 1.50698 * 109.46926 * 65.00047 * 4 2 1 6 6 O 1.20827 * 120.00316 * 0.02562 * 5 4 2 7 7 O 1.34231 * 120.00006 * 179.97438 * 5 4 2 8 8 C 1.45207 * 116.99926 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46907 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47097 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99935 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00110 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00003 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00086 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47067 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47268 * 120.00167 * 14 12 10 17 17 H 1.48498 * 109.47082 * 240.00200 * 14 12 10 18 18 C 1.50703 * 109.47193 * 120.00465 * 2 1 3 19 19 C 1.38655 * 120.78758 * 239.99540 * 18 2 1 20 20 C 1.38197 * 119.15875 * 179.97438 * 19 18 2 21 21 N 1.31874 * 120.76735 * 359.97438 * 20 19 18 22 22 C 1.31868 * 121.72350 * 0.02562 * 21 20 19 23 23 C 1.38198 * 120.76515 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47059 * 299.99835 * 1 2 3 25 25 H 1.08996 * 109.47243 * 59.99512 * 1 2 3 26 26 H 1.08999 * 109.47564 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47205 * 184.99779 * 4 2 1 28 28 H 1.09002 * 109.47245 * 305.00054 * 4 2 1 29 29 H 1.08998 * 109.47384 * 300.00489 * 8 7 5 30 30 H 1.08998 * 109.46678 * 60.00714 * 8 7 5 31 31 H 1.08998 * 109.47086 * 300.00167 * 9 8 7 32 32 H 1.09005 * 109.46969 * 59.99985 * 9 8 7 33 33 H 0.97002 * 120.00062 * 179.97438 * 13 12 10 34 34 H 1.07995 * 120.41666 * 359.96253 * 19 18 2 35 35 H 1.07994 * 119.61835 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.61410 * 179.97438 * 22 21 20 37 37 H 1.08005 * 120.41632 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 8 1.0140 1.0836 -2.3637 7 8 1.9838 -0.3895 -3.6952 8 6 1.5656 0.4111 -4.8322 9 6 2.0430 -0.2519 -6.1258 10 6 1.6096 0.5792 -7.3058 11 1 1.0500 1.4894 -7.1488 12 6 1.9284 0.1780 -8.5858 13 7 2.6111 -0.9296 -8.7770 14 14 1.3918 1.2086 -10.0485 15 1 0.6441 2.3983 -9.5681 16 1 2.5886 1.6504 -10.8086 17 1 0.5165 0.3967 -10.9316 18 6 2.0323 -0.7105 1.2304 19 6 2.8305 -0.0526 2.1538 20 6 3.2720 -0.7364 3.2706 21 7 2.9422 -1.9987 3.4628 22 6 2.1851 -2.6558 2.6061 23 6 1.7073 -2.0376 1.4661 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1262 -0.7995 -1.2057 28 1 1.6053 -1.7198 -1.2952 29 1 0.4783 0.4869 -4.8430 30 1 1.9987 1.4082 -4.7533 31 1 3.1303 -0.3281 -6.1152 32 1 1.6097 -1.2491 -6.2044 33 1 2.8351 -1.2120 -9.6776 34 1 3.1038 0.9812 2.0020 35 1 3.8937 -0.2311 3.9947 36 1 1.9361 -3.6891 2.7971 37 1 1.0873 -2.5810 0.7684 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769067673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:47 Heat of formation + Delta-G solvation = -94.034263 kcal Electronic energy + Delta-G solvation = -18680.635882 eV Core-core repulsion = 15614.477528 eV Total energy + Delta-G solvation = -3066.158354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69796 -40.98772 -38.09106 -36.56193 -35.45552 -32.54344 -32.15143 -31.83867 -29.29178 -26.98361 -25.35373 -24.33610 -23.24966 -22.34315 -21.02042 -19.07770 -18.31307 -17.79164 -17.52123 -17.18287 -16.89288 -16.44594 -16.37254 -15.58027 -15.04834 -14.85603 -14.49906 -14.40640 -14.30969 -14.13919 -13.61623 -13.18549 -12.97930 -12.76516 -12.69880 -12.58866 -12.42950 -12.35012 -11.85344 -11.78247 -11.49653 -11.43997 -11.23080 -10.62839 -10.51066 -10.37789 -10.03487 -8.28264 -6.41428 0.25454 0.29189 1.21049 1.40662 1.41039 1.54514 1.79277 2.39492 2.90425 3.06306 3.45396 3.61415 3.65773 3.85106 4.02241 4.13227 4.22234 4.23838 4.26631 4.27605 4.40176 4.60668 4.65183 4.70112 4.78388 4.87073 4.95093 5.05448 5.12080 5.25072 5.33007 5.45894 5.47320 5.61269 5.76195 5.82577 6.05663 6.71580 6.78186 7.07705 7.28646 8.84573 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050155 B = 0.002933 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.139105 B = 9543.086772 C = 9764.589567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.034 4.034 3 H 0.086 0.914 4 C -0.101 4.101 5 C 0.454 3.546 6 O -0.536 6.536 7 O -0.369 6.369 8 C 0.091 3.909 9 C 0.029 3.971 10 C -0.550 4.550 11 H 0.064 0.936 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.973 3.027 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.036 4.036 19 C -0.172 4.172 20 C 0.089 3.911 21 N -0.517 5.517 22 C 0.089 3.911 23 C -0.167 4.167 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.005 0.995 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.150 0.850 35 H 0.174 0.826 36 H 0.175 0.825 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -1.137 22.262 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.052 4.052 3 H 0.104 0.896 4 C -0.138 4.138 5 C 0.299 3.701 6 O -0.426 6.426 7 O -0.285 6.285 8 C 0.018 3.982 9 C -0.008 4.008 10 C -0.587 4.587 11 H 0.083 0.917 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.797 3.203 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.200 1.200 18 C -0.045 4.045 19 C -0.191 4.191 20 C -0.067 4.067 21 N -0.227 5.227 22 C -0.067 4.067 23 C -0.187 4.187 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.168 0.832 35 H 0.191 0.809 36 H 0.192 0.808 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.980 -1.368 22.874 22.936 hybrid contribution -0.456 0.915 -1.787 2.059 sum -1.436 -0.453 21.087 21.141 Atomic orbital electron populations 1.21949 0.93241 1.02867 1.02633 1.19891 0.97051 0.99132 0.89133 0.89570 1.21578 1.05122 1.00385 0.86707 1.24397 0.75764 0.84327 0.85637 1.90598 1.38627 1.25852 1.87529 1.86523 1.72313 1.53676 1.16035 1.23116 0.98949 0.93544 0.82578 1.18987 0.96151 0.95977 0.89658 1.21408 1.36511 1.09228 0.91581 0.91735 1.25964 0.94678 0.96388 1.02288 1.70098 1.39527 1.24046 1.22954 0.85278 0.78263 0.78655 0.78124 1.18625 1.20075 1.20021 1.20228 0.94824 0.94323 0.95076 1.22320 0.98923 1.02446 0.95427 1.23125 0.97016 0.90180 0.96371 1.67700 1.13321 1.10096 1.31594 1.23149 0.92673 1.00916 0.89948 1.22259 1.01765 0.95045 0.99608 0.91782 0.92524 0.91210 0.86082 0.85377 0.92199 0.92314 0.97617 0.97514 0.92320 0.83230 0.80851 0.80798 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.76 71.98 0.63 -2.23 16 2 C -0.03 -0.61 2.24 -11.54 -0.03 -0.64 16 3 H 0.09 1.71 7.76 -2.39 -0.02 1.69 16 4 C -0.10 -2.04 5.04 29.85 0.15 -1.89 16 5 C 0.45 14.26 7.67 71.24 0.55 14.81 16 6 O -0.54 -19.17 13.72 21.96 0.30 -18.87 16 7 O -0.37 -14.22 10.22 -51.42 -0.53 -14.74 16 8 C 0.09 4.04 5.41 71.98 0.39 4.43 16 9 C 0.03 1.57 5.35 29.85 0.16 1.73 16 10 C -0.55 -31.02 9.11 25.60 0.23 -30.78 16 11 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 12 C 0.01 0.33 5.46 84.65 0.46 0.79 16 13 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 14 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 15 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 C -0.04 -0.59 4.80 -19.67 -0.09 -0.68 16 19 C -0.17 -2.61 9.76 22.36 0.22 -2.39 16 20 C 0.09 1.43 11.18 84.68 0.95 2.37 16 21 N -0.52 -9.93 10.36 -195.86 -2.03 -11.96 16 22 C 0.09 1.41 11.18 84.68 0.95 2.35 16 23 C -0.17 -2.44 8.89 22.36 0.20 -2.24 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.41 5.96 -2.39 -0.01 1.39 16 26 H 0.07 1.11 7.48 -2.39 -0.02 1.09 16 27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.13 2.07 7.67 -2.39 -0.02 2.05 16 29 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 30 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.15 1.74 8.01 -2.91 -0.02 1.72 16 35 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.15 1.62 7.35 -2.91 -0.02 1.60 16 Total: -1.00 -68.51 318.52 5.87 -62.64 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.05 Total: 6.91 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 4.76 Total: -14.38 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.74 Total: -66.95 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.22 Total: -33.61 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.51 5.87 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769067673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.393 kcal (2) G-P(sol) polarization free energy of solvation -68.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds