Wall clock time and date at job start Mon Mar 30 2020 00:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.20826 * 119.99939 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00046 * 179.97438 * 5 4 2 8 8 C 1.45192 * 117.00018 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47109 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47152 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00115 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99722 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00027 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47232 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46783 * 120.00261 * 14 12 10 17 17 H 1.48497 * 109.47298 * 239.99997 * 14 12 10 18 18 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 19 19 C 1.38651 * 120.78710 * 299.70767 * 18 2 1 20 20 C 1.38205 * 119.16372 * 179.75981 * 19 18 2 21 21 N 1.31871 * 120.75932 * 0.53418 * 20 19 18 22 22 C 1.31865 * 121.73135 * 359.74736 * 21 20 19 23 23 C 1.38209 * 120.75961 * 359.96854 * 22 21 20 24 24 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 27 27 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 28 28 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 29 29 H 1.09001 * 109.47630 * 300.00318 * 8 7 5 30 30 H 1.08998 * 109.47321 * 60.00129 * 8 7 5 31 31 H 1.09005 * 109.47066 * 299.99718 * 9 8 7 32 32 H 1.08998 * 109.47698 * 59.99951 * 9 8 7 33 33 H 0.97000 * 119.99888 * 180.02562 * 13 12 10 34 34 H 1.08005 * 120.41678 * 0.02562 * 19 18 2 35 35 H 1.08001 * 119.62046 * 180.25389 * 20 19 18 36 36 H 1.07992 * 119.62587 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.41594 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0831 2.3637 7 8 1.9831 -0.3899 3.6952 8 6 1.5650 0.4105 4.8322 9 6 2.0425 -0.2525 6.1257 10 6 1.6081 0.5780 7.3059 11 1 1.0478 1.4879 7.1489 12 6 1.9259 0.1762 8.5860 13 7 2.6077 -0.9320 8.7771 14 14 1.3880 1.2060 10.0487 15 1 0.6396 2.3952 9.5684 16 1 0.5121 0.3934 10.9307 17 1 2.5841 1.6475 10.8099 18 6 2.0323 -0.7103 -1.2305 19 6 1.7123 -2.0392 -1.4632 20 6 2.1870 -2.6562 -2.6051 21 7 2.9439 -1.9989 -3.4619 22 6 3.2728 -0.7364 -3.2702 23 6 2.8303 -0.0524 -2.1538 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 3.1264 -0.7993 1.2056 28 1 1.6054 -1.7197 1.2951 29 1 1.9986 1.4075 4.7538 30 1 0.4778 0.4870 4.8426 31 1 1.6092 -1.2496 6.2044 32 1 3.1298 -0.3286 6.1152 33 1 2.8310 -1.2149 9.6777 34 1 1.0964 -2.5840 -0.7630 35 1 1.9388 -3.6899 -2.7958 36 1 3.8951 -0.2311 -3.9939 37 1 3.1028 0.9817 -2.0026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769067683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:49 Heat of formation + Delta-G solvation = -76.272535 kcal Electronic energy + Delta-G solvation = -18680.129914 eV Core-core repulsion = 15614.741766 eV Total energy + Delta-G solvation = -3065.388148 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69623 -39.93983 -36.79989 -35.49159 -33.37873 -31.56957 -31.25311 -30.34019 -28.25081 -25.15800 -24.44691 -23.67056 -21.73651 -20.82718 -19.99778 -17.75196 -16.85689 -16.52750 -16.20050 -16.07136 -15.76219 -15.64836 -14.54994 -14.44061 -14.25462 -13.84947 -13.57505 -13.37610 -12.93013 -12.42634 -12.37924 -12.10068 -11.77195 -11.53363 -11.20348 -11.08272 -11.02915 -10.77909 -10.69858 -10.18552 -9.83613 -9.72001 -9.67731 -9.60099 -9.41037 -9.30757 -8.47615 -6.13366 -4.17811 0.87817 0.97484 2.51209 3.10521 3.25381 3.33094 3.38044 3.56790 4.20804 4.30984 4.37448 4.40611 4.68517 4.82779 4.86574 4.90003 5.07846 5.23345 5.31844 5.39906 5.41675 5.47562 5.53794 5.66282 5.77681 5.86822 6.04589 6.05461 6.13576 6.22279 6.44202 6.60188 6.98001 7.52935 7.58795 7.71617 7.83693 8.14784 8.22957 8.88048 9.46843 10.98198 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050144 B = 0.002934 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.257081 B = 9541.841195 C = 9763.882195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.042 4.042 3 H 0.093 0.907 4 C -0.109 4.109 5 C 0.456 3.544 6 O -0.516 6.516 7 O -0.358 6.358 8 C 0.075 3.925 9 C 0.024 3.976 10 C -0.526 4.526 11 H 0.060 0.940 12 C 0.060 3.940 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.029 4.029 19 C -0.167 4.167 20 C 0.099 3.901 21 N -0.492 5.492 22 C 0.098 3.902 23 C -0.169 4.169 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.263 0.737 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 -1.373 -21.613 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 H 0.111 0.889 4 C -0.147 4.147 5 C 0.300 3.700 6 O -0.406 6.406 7 O -0.274 6.274 8 C 0.003 3.997 9 C -0.013 4.013 10 C -0.564 4.564 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.528 5.528 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.037 4.037 19 C -0.187 4.187 20 C -0.058 4.058 21 N -0.201 5.201 22 C -0.058 4.058 23 C -0.188 4.188 24 H 0.073 0.927 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.640 -1.610 -22.196 22.263 hybrid contribution -0.568 1.020 1.686 2.051 sum -1.208 -0.589 -20.510 20.554 Atomic orbital electron populations 1.21994 0.92996 1.02224 1.03669 1.20005 0.97324 0.99480 0.89243 0.88868 1.21424 1.03978 1.00134 0.89196 1.23414 0.76642 0.84212 0.85782 1.90599 1.37707 1.24754 1.87526 1.86528 1.71792 1.53727 1.15324 1.23639 0.99231 0.93988 0.82854 1.19178 0.97803 0.96865 0.87494 1.21018 1.36172 1.08783 0.90473 0.92213 1.24991 0.94901 0.95199 0.99099 1.69984 1.38612 1.22327 1.21907 0.86415 0.78460 0.80244 0.82203 1.19589 1.20807 1.20805 1.20292 0.94167 0.93920 0.95362 1.22071 1.01963 0.95233 0.99419 1.22769 0.93006 0.99964 0.90038 1.67671 1.12446 1.09245 1.30713 1.22757 0.96875 0.90390 0.95808 1.22121 0.99311 1.01712 0.95696 0.92653 0.89850 0.92478 0.87713 0.87632 0.92321 0.92301 0.95366 0.95372 0.92737 0.84611 0.82747 0.82798 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.76 37.16 0.33 -1.24 16 2 C -0.04 -0.42 2.24 -91.77 -0.21 -0.63 16 3 H 0.09 0.99 7.76 -51.92 -0.40 0.59 16 4 C -0.11 -1.22 5.04 -27.88 -0.14 -1.36 16 5 C 0.46 7.35 7.68 36.01 0.28 7.63 16 6 O -0.52 -9.33 13.72 -18.75 -0.26 -9.59 16 7 O -0.36 -6.92 10.22 -39.26 -0.40 -7.32 16 8 C 0.08 1.65 5.40 37.16 0.20 1.85 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 11 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 14 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C -0.03 -0.27 4.80 -104.32 -0.50 -0.77 16 19 C -0.17 -1.42 8.89 -39.44 -0.35 -1.77 16 20 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16 21 N -0.49 -5.11 10.36 -13.25 -0.14 -5.25 16 22 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 23 C -0.17 -1.44 9.76 -39.44 -0.39 -1.83 16 24 H 0.05 0.50 7.50 -51.92 -0.39 0.11 16 25 H 0.08 1.06 5.96 -51.93 -0.31 0.75 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.11 1.00 7.65 -51.93 -0.40 0.61 16 29 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.14 0.93 7.35 -52.48 -0.39 0.54 16 35 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.14 0.92 8.01 -52.49 -0.42 0.50 16 LS Contribution 318.51 15.07 4.80 4.80 Total: -1.00 -31.88 318.51 -7.24 -39.12 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.23 Total: -2.79 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.73 Total: -9.72 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.60 Total: -30.75 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.66 Total: -16.90 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.88 -7.24 -39.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769067683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.156 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds