Wall clock time and date at job start Mon Mar 30 2020 00:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.20826 * 119.99939 * 0.02562 * 5 4 2 7 7 O 1.34230 * 120.00046 * 179.97438 * 5 4 2 8 8 C 1.45192 * 117.00018 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47109 * 180.02562 * 8 7 5 10 10 C 1.50702 * 109.47152 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99969 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00115 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99722 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00027 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47232 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46783 * 120.00261 * 14 12 10 17 17 H 1.48497 * 109.47298 * 239.99997 * 14 12 10 18 18 C 1.50698 * 109.47043 * 240.00465 * 2 1 3 19 19 C 1.38651 * 120.78710 * 299.70767 * 18 2 1 20 20 C 1.38205 * 119.16372 * 179.75981 * 19 18 2 21 21 N 1.31871 * 120.75932 * 0.53418 * 20 19 18 22 22 C 1.31865 * 121.73135 * 359.74736 * 21 20 19 23 23 C 1.38209 * 120.75961 * 359.96854 * 22 21 20 24 24 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 27 27 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 28 28 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 29 29 H 1.09001 * 109.47630 * 300.00318 * 8 7 5 30 30 H 1.08998 * 109.47321 * 60.00129 * 8 7 5 31 31 H 1.09005 * 109.47066 * 299.99718 * 9 8 7 32 32 H 1.08998 * 109.47698 * 59.99951 * 9 8 7 33 33 H 0.97000 * 119.99888 * 180.02562 * 13 12 10 34 34 H 1.08005 * 120.41678 * 0.02562 * 19 18 2 35 35 H 1.08001 * 119.62046 * 180.25389 * 20 19 18 36 36 H 1.07992 * 119.62587 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.41594 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0132 1.0831 2.3637 7 8 1.9831 -0.3899 3.6952 8 6 1.5650 0.4105 4.8322 9 6 2.0425 -0.2525 6.1257 10 6 1.6081 0.5780 7.3059 11 1 1.0478 1.4879 7.1489 12 6 1.9259 0.1762 8.5860 13 7 2.6077 -0.9320 8.7771 14 14 1.3880 1.2060 10.0487 15 1 0.6396 2.3952 9.5684 16 1 0.5121 0.3934 10.9307 17 1 2.5841 1.6475 10.8099 18 6 2.0323 -0.7103 -1.2305 19 6 1.7123 -2.0392 -1.4632 20 6 2.1870 -2.6562 -2.6051 21 7 2.9439 -1.9989 -3.4619 22 6 3.2728 -0.7364 -3.2702 23 6 2.8303 -0.0524 -2.1538 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 3.1264 -0.7993 1.2056 28 1 1.6054 -1.7197 1.2951 29 1 1.9986 1.4075 4.7538 30 1 0.4778 0.4870 4.8426 31 1 1.6092 -1.2496 6.2044 32 1 3.1298 -0.3286 6.1152 33 1 2.8310 -1.2149 9.6777 34 1 1.0964 -2.5840 -0.7630 35 1 1.9388 -3.6899 -2.7958 36 1 3.8951 -0.2311 -3.9939 37 1 3.1028 0.9817 -2.0026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769067683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:48 Heat of formation + Delta-G solvation = -94.028751 kcal Electronic energy + Delta-G solvation = -18680.899881 eV Core-core repulsion = 15614.741766 eV Total energy + Delta-G solvation = -3066.158115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.69866 -40.98790 -38.09211 -36.56222 -35.45479 -32.54318 -32.15056 -31.83838 -29.29240 -26.98336 -25.35261 -24.33719 -23.24978 -22.34312 -21.02061 -19.07812 -18.31326 -17.79230 -17.52135 -17.18271 -16.89221 -16.44515 -16.37358 -15.58066 -15.04977 -14.85448 -14.50010 -14.40576 -14.30927 -14.13969 -13.61620 -13.18528 -12.97931 -12.76533 -12.69882 -12.58851 -12.42965 -12.35040 -11.85340 -11.78204 -11.49676 -11.43956 -11.23036 -10.62812 -10.51027 -10.37806 -10.03428 -8.28288 -6.41415 0.25412 0.29226 1.21043 1.40667 1.41028 1.54525 1.79279 2.39514 2.90417 3.06285 3.45431 3.61386 3.65742 3.85111 4.02262 4.13203 4.22210 4.23838 4.26609 4.27587 4.40188 4.60673 4.65166 4.70124 4.78398 4.87070 4.95068 5.05405 5.12106 5.25065 5.33005 5.45894 5.47295 5.61269 5.76199 5.82583 6.05648 6.71583 6.78207 7.07735 7.28619 8.84562 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050144 B = 0.002934 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.257081 B = 9541.841195 C = 9763.882195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.034 4.034 3 H 0.086 0.914 4 C -0.101 4.101 5 C 0.454 3.546 6 O -0.536 6.536 7 O -0.369 6.369 8 C 0.091 3.909 9 C 0.029 3.971 10 C -0.550 4.550 11 H 0.064 0.936 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.973 3.027 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.036 4.036 19 C -0.167 4.167 20 C 0.089 3.911 21 N -0.518 5.518 22 C 0.089 3.911 23 C -0.172 4.172 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -1.129 -22.261 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.052 4.052 3 H 0.104 0.896 4 C -0.138 4.138 5 C 0.299 3.701 6 O -0.426 6.426 7 O -0.285 6.285 8 C 0.018 3.982 9 C -0.008 4.008 10 C -0.587 4.587 11 H 0.083 0.917 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.797 3.203 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.201 1.201 18 C -0.044 4.044 19 C -0.187 4.187 20 C -0.067 4.067 21 N -0.227 5.227 22 C -0.067 4.067 23 C -0.191 4.191 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.077 0.923 34 H 0.171 0.829 35 H 0.192 0.808 36 H 0.192 0.808 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.962 -1.362 -22.872 22.933 hybrid contribution -0.458 0.914 1.786 2.058 sum -1.420 -0.448 -21.086 21.138 Atomic orbital electron populations 1.21951 0.93242 1.02864 1.02631 1.19890 0.97052 0.99137 0.89131 0.89569 1.21577 1.05124 1.00384 0.86707 1.24397 0.75773 0.84317 0.85637 1.90598 1.38585 1.25891 1.87530 1.86520 1.72352 1.53639 1.16029 1.23113 0.98947 0.93549 0.82580 1.18988 0.96147 0.95982 0.89658 1.21411 1.36482 1.09263 0.91574 0.91735 1.25966 0.94687 0.96383 1.02291 1.70099 1.39580 1.23990 1.22953 0.85276 0.78264 0.78651 0.78118 1.18625 1.20035 1.20062 1.20224 0.94823 0.94314 0.95089 1.22263 1.01796 0.95024 0.99599 1.23151 0.92675 1.00924 0.89934 1.67694 1.13301 1.10090 1.31629 1.23126 0.97025 0.90171 0.96362 1.22321 0.98902 1.02463 0.95432 0.91218 0.92515 0.91789 0.86081 0.85375 0.92319 0.92199 0.97522 0.97608 0.92321 0.82908 0.80796 0.80847 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.76 71.98 0.63 -2.23 16 2 C -0.03 -0.61 2.24 -11.54 -0.03 -0.64 16 3 H 0.09 1.71 7.76 -2.38 -0.02 1.69 16 4 C -0.10 -2.04 5.04 29.85 0.15 -1.89 16 5 C 0.45 14.26 7.68 71.24 0.55 14.81 16 6 O -0.54 -19.17 13.72 21.97 0.30 -18.87 16 7 O -0.37 -14.21 10.22 -51.41 -0.53 -14.74 16 8 C 0.09 4.04 5.40 71.98 0.39 4.43 16 9 C 0.03 1.57 5.35 29.85 0.16 1.73 16 10 C -0.55 -31.02 9.11 25.60 0.23 -30.78 16 11 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 12 C 0.01 0.32 5.46 84.66 0.46 0.78 16 13 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 14 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 15 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 18 C -0.04 -0.59 4.80 -19.67 -0.09 -0.68 16 19 C -0.17 -2.44 8.89 22.36 0.20 -2.24 16 20 C 0.09 1.41 11.18 84.68 0.95 2.35 16 21 N -0.52 -9.93 10.36 -195.85 -2.03 -11.96 16 22 C 0.09 1.43 11.18 84.68 0.95 2.38 16 23 C -0.17 -2.61 9.76 22.36 0.22 -2.39 16 24 H 0.07 1.11 7.50 -2.38 -0.02 1.09 16 25 H 0.06 1.41 5.96 -2.39 -0.01 1.40 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.13 2.07 7.65 -2.39 -0.02 2.05 16 29 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 30 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 31 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.15 1.62 7.35 -2.91 -0.02 1.60 16 35 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.15 1.74 8.01 -2.91 -0.02 1.72 16 Total: -1.00 -68.51 318.51 5.87 -62.64 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.05 Total: 6.91 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.76 Total: -14.39 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.74 Total: -66.95 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.22 Total: -33.60 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.51 5.87 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769067683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.388 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds