Wall clock time and date at job start Sun Mar 29 2020 23:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 6 6 C 1.34777 * 120.00660 * 275.00187 * 5 3 2 7 7 O 1.21685 * 119.99488 * 0.02562 * 6 5 3 8 8 C 1.46371 * 120.00339 * 179.97438 * 6 5 3 9 9 H 1.07995 * 119.99808 * 0.02562 * 8 6 5 10 10 C 1.40046 * 119.99918 * 180.02562 * 8 6 5 11 11 N 1.30674 * 120.00213 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00140 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47197 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47416 * 120.00128 * 12 10 8 15 15 H 1.48503 * 109.47297 * 240.00177 * 12 10 8 16 16 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 17 17 C 1.38162 * 120.02610 * 264.72261 * 16 3 2 18 18 C 1.38253 * 120.05256 * 179.76947 * 17 16 3 19 19 C 1.38279 * 120.11369 * 0.50866 * 18 17 16 20 20 C 1.38129 * 120.05364 * 359.74565 * 19 18 17 21 21 C 1.38710 * 120.02920 * 84.99757 * 16 3 2 22 22 O 1.35899 * 120.05491 * 0.02562 * 21 16 3 23 23 C 1.42903 * 116.99996 * 179.97438 * 22 21 16 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 0.97010 * 119.99804 * 95.00047 * 5 3 2 30 30 H 0.97002 * 120.00255 * 180.02562 * 11 10 8 31 31 H 1.08000 * 119.97666 * 0.02629 * 17 16 3 32 32 H 1.08003 * 119.93905 * 180.25651 * 18 17 16 33 33 H 1.08001 * 119.97383 * 179.77049 * 19 18 17 34 34 H 1.07999 * 120.02457 * 180.02562 * 20 19 18 35 35 H 1.08994 * 109.46951 * 60.00032 * 23 22 21 36 36 H 1.08996 * 109.46955 * 180.02562 * 23 22 21 37 37 H 1.09002 * 109.47102 * 299.99786 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3670 7 8 -0.3422 2.6317 0.4314 8 6 0.0477 3.3183 2.6179 9 1 0.7375 3.3469 3.4484 10 6 -1.2174 3.9069 2.7378 11 7 -2.0522 3.8719 1.7331 12 14 -1.7116 4.7421 4.3339 13 1 -0.5962 4.6448 5.3095 14 1 -2.0166 6.1714 4.0710 15 1 -2.9150 4.0734 4.8906 16 6 3.5419 1.4444 -0.1239 17 6 4.3289 1.5206 1.0091 18 6 5.7068 1.5175 0.8963 19 6 6.3008 1.4488 -0.3505 20 6 5.5183 1.3778 -1.4865 21 6 4.1352 1.3753 -1.3758 22 8 3.3631 1.3064 -2.4920 23 6 4.0424 1.2383 -3.7475 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.2720 2.1231 1.9978 30 1 -2.9283 4.2799 1.8160 31 1 3.8675 1.5784 1.9838 32 1 6.3204 1.5730 1.7835 33 1 7.3774 1.4504 -0.4362 34 1 5.9826 1.3237 -2.4601 35 1 4.6724 0.3492 -3.7718 36 1 3.3109 1.1879 -4.5540 37 1 4.6618 2.1262 -3.8742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772147233.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:11 Heat of formation + Delta-G solvation = -53.467446 kcal Electronic energy + Delta-G solvation = -20034.496797 eV Core-core repulsion = 16970.097552 eV Total energy + Delta-G solvation = -3064.399245 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.21541 -37.92740 -36.98163 -34.52086 -32.35099 -31.08538 -30.51268 -29.92382 -27.29408 -26.42727 -24.99736 -22.08374 -21.81824 -20.62922 -19.04456 -18.18899 -17.03828 -16.04511 -15.66004 -15.58442 -15.19103 -14.49867 -14.32313 -14.04619 -13.84287 -13.39787 -13.03615 -12.68882 -12.41296 -12.02142 -11.90745 -11.60151 -11.32555 -11.20425 -11.05058 -10.91539 -10.90753 -10.60758 -10.42034 -10.21593 -10.06939 -9.90651 -8.81455 -8.68466 -7.99272 -7.49866 -7.34442 -6.12365 -4.57483 1.46577 1.58118 3.16106 3.24484 3.28575 3.40133 3.89952 4.15101 4.65641 4.78040 4.87423 5.03247 5.09596 5.13950 5.18998 5.42987 5.49142 5.58019 5.75358 5.80056 5.89710 6.04876 6.09210 6.27653 6.41074 6.47399 6.58044 6.67384 6.75334 6.83344 6.92257 7.07656 7.46563 7.49404 7.53098 8.00502 8.19990 8.40191 9.08770 9.61744 10.66702 10.86895 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025506 B = 0.005429 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.508655 B = 5156.713281 C = 5702.840150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.200 3.800 4 H 0.090 0.910 5 N -0.762 5.762 6 C 0.557 3.443 7 O -0.571 6.571 8 C -0.546 4.546 9 H 0.066 0.934 10 C 0.089 3.911 11 N -0.767 5.767 12 Si 0.904 3.096 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.103 4.103 17 C -0.077 4.077 18 C -0.155 4.155 19 C -0.093 4.093 20 C -0.210 4.210 21 C 0.130 3.870 22 O -0.307 6.307 23 C 0.028 3.972 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.028 0.972 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.377 0.623 30 H 0.266 0.734 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.408 -5.701 -4.917 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.093 3.907 4 H 0.107 0.893 5 N -0.418 5.418 6 C 0.361 3.639 7 O -0.453 6.453 8 C -0.583 4.583 9 H 0.084 0.916 10 C -0.130 4.130 11 N -0.396 5.396 12 Si 0.729 3.271 13 H -0.189 1.189 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.104 4.104 17 C -0.096 4.096 18 C -0.173 4.173 19 C -0.111 4.111 20 C -0.229 4.229 21 C 0.085 3.915 22 O -0.220 6.220 23 C -0.067 4.067 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.210 0.790 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.413 -5.669 -5.718 15.644 hybrid contribution 0.454 0.440 0.976 1.163 sum 13.867 -5.229 -4.741 15.560 Atomic orbital electron populations 1.21768 0.94317 0.98841 1.04631 1.21837 0.97436 0.96124 1.00165 1.19300 0.86933 0.93373 0.91046 0.89259 1.46348 1.19013 1.62788 1.13660 1.18124 0.78932 0.77754 0.89089 1.90609 1.50947 1.62436 1.41306 1.20915 1.00652 1.38090 0.98685 0.91622 1.25665 0.95984 0.94577 0.96814 1.70029 1.05895 1.33927 1.29768 0.86375 0.78979 0.79181 0.82549 1.18864 1.20270 1.20253 1.19691 0.97156 1.03370 0.90227 1.20874 0.93186 0.97450 0.98047 1.21011 0.94708 1.04212 0.97410 1.20833 0.99213 0.98939 0.92141 1.21142 0.92422 1.09657 0.99651 1.18815 0.89359 0.96828 0.86547 1.86176 1.34679 1.88200 1.12985 1.23023 0.98749 1.00831 0.84106 0.90576 0.92522 0.95329 0.93083 0.92955 0.78991 0.92295 0.85124 0.86079 0.86253 0.85803 0.92964 0.88340 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.69 16 2 C -0.12 -2.25 5.59 -26.73 -0.15 -2.40 16 3 C 0.20 4.11 2.19 -69.09 -0.15 3.96 16 4 H 0.09 2.14 7.13 -51.93 -0.37 1.77 16 5 N -0.76 -17.28 4.94 -56.35 -0.28 -17.56 16 6 C 0.56 15.63 6.31 -12.99 -0.08 15.55 16 7 O -0.57 -17.85 12.15 5.20 0.06 -17.78 16 8 C -0.55 -15.40 9.54 -35.63 -0.34 -15.74 16 9 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 10 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 11 N -0.77 -22.93 11.83 55.55 0.66 -22.28 16 12 Si 0.90 20.27 29.56 -169.99 -5.02 15.25 16 13 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 14 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 C -0.10 -1.79 5.07 -104.48 -0.53 -2.32 16 17 C -0.08 -1.17 9.24 -39.60 -0.37 -1.54 16 18 C -0.16 -1.98 10.04 -39.56 -0.40 -2.37 16 19 C -0.09 -1.11 10.04 -39.61 -0.40 -1.51 16 20 C -0.21 -2.71 9.04 -39.43 -0.36 -3.06 16 21 C 0.13 2.06 6.66 -39.22 -0.26 1.79 16 22 O -0.31 -4.80 9.63 -19.42 -0.19 -4.99 16 23 C 0.03 0.29 9.81 101.05 0.99 1.28 16 24 H 0.08 1.94 5.64 -51.93 -0.29 1.65 16 25 H 0.06 1.31 7.84 -51.93 -0.41 0.91 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.38 7.57 6.18 -40.82 -0.25 7.32 16 30 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 31 H 0.13 1.88 6.06 -52.49 -0.32 1.56 16 32 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 33 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.12 1.27 6.30 -52.49 -0.33 0.93 16 35 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -33.81 306.28 -6.82 -40.63 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.85 Total: 8.76 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -1.82 Total: -6.65 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.38 Total: -39.84 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.12 Total: -22.78 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.81 -6.82 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772147233.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.834 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds