Wall clock time and date at job start Sun Mar 29 2020 23:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47268 * 120.00407 * 2 1 3 5 5 C 1.50704 * 109.47053 * 176.14136 * 4 2 1 6 6 O 1.21279 * 120.00370 * 5.43069 * 5 4 2 7 7 N 1.34777 * 119.99760 * 185.43681 * 5 4 2 8 8 C 1.46504 * 119.99649 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46771 * 179.97438 * 8 7 5 10 10 H 1.07993 * 120.00299 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99676 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00040 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00034 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46857 * 59.99758 * 13 11 9 15 15 H 1.48494 * 109.47481 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47170 * 300.00272 * 13 11 9 17 17 C 1.50704 * 109.47049 * 239.99936 * 2 1 3 18 18 C 1.38238 * 119.99727 * 89.99761 * 17 2 1 19 19 C 1.38231 * 120.00148 * 180.02562 * 18 17 2 20 20 C 1.38241 * 120.00099 * 359.95619 * 19 18 17 21 21 C 1.38240 * 119.99474 * 0.28173 * 20 19 18 22 22 C 1.38231 * 120.00464 * 270.02271 * 17 2 1 23 23 H 1.09009 * 109.47165 * 184.94977 * 1 2 3 24 24 H 1.09004 * 109.46848 * 304.94448 * 1 2 3 25 25 H 1.09004 * 109.47505 * 64.94677 * 1 2 3 26 26 H 0.96705 * 114.00355 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47095 * 296.13661 * 4 2 1 28 28 H 1.08996 * 109.47365 * 56.14148 * 4 2 1 29 29 H 0.96997 * 120.00607 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47062 * 299.98992 * 8 7 5 31 31 H 1.09003 * 109.47515 * 59.99912 * 8 7 5 32 32 H 0.97001 * 119.99955 * 180.02562 * 12 11 9 33 33 H 1.07997 * 120.00026 * 0.02562 * 18 17 2 34 34 H 1.07999 * 120.00038 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.00124 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.99447 * 179.72623 * 21 20 19 37 37 H 1.08000 * 119.99539 * 359.97438 * 22 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5440 -0.8046 1.2022 6 8 4.1547 -0.2488 0.3141 7 7 4.2103 -1.4970 2.1472 8 6 5.6724 -1.5775 2.1019 9 6 6.1662 -2.4024 3.2625 10 1 5.4616 -2.8240 3.9639 11 6 7.5178 -2.6187 3.4288 12 7 8.3759 -2.1048 2.5749 13 14 8.1300 -3.6405 4.8677 14 1 7.5555 -5.0072 4.7841 15 1 9.6120 -3.7222 4.8218 16 1 7.7092 -3.0038 6.1416 17 6 2.0323 -0.7104 -1.2305 18 6 2.2626 0.0005 -2.3934 19 6 2.7228 -0.6511 -3.5223 20 6 2.9537 -2.0137 -3.4880 21 6 2.7187 -2.7254 -2.3265 22 6 2.2622 -2.0731 -1.1965 23 1 -0.3634 -1.0239 0.0887 24 1 -0.3633 0.5887 0.8424 25 1 -0.3634 0.4352 -0.9310 26 1 2.9703 1.4236 -0.0004 27 1 1.7343 -0.1691 2.1378 28 1 1.6213 -1.7271 1.2844 29 1 3.7219 -1.9414 2.8578 30 1 5.9818 -2.0440 1.1666 31 1 6.0937 -0.5741 2.1644 32 1 9.3267 -2.2573 2.6918 33 1 2.0830 1.0651 -2.4200 34 1 2.9024 -0.0957 -4.4309 35 1 3.3129 -2.5229 -4.3701 36 1 2.8948 -3.7907 -2.3010 37 1 2.0823 -2.6285 -0.2879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787627714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:29 Heat of formation + Delta-G solvation = -95.041095 kcal Electronic energy + Delta-G solvation = -19940.632954 eV Core-core repulsion = 16874.430941 eV Total energy + Delta-G solvation = -3066.202014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52538 -39.71411 -37.86111 -36.05065 -34.39986 -33.77334 -31.74382 -30.84443 -29.91883 -28.31960 -24.80584 -24.02459 -23.29026 -21.67494 -20.98995 -18.95440 -18.64265 -17.55686 -17.42486 -16.88691 -16.44540 -16.25463 -15.60988 -15.55247 -15.21547 -14.81658 -14.38137 -14.15645 -14.07000 -13.78250 -13.39922 -13.22094 -13.02606 -12.95572 -12.75220 -12.64084 -12.60404 -12.24650 -12.11208 -11.68699 -11.51175 -10.99281 -10.79428 -10.71709 -9.81916 -9.76224 -9.51524 -8.29451 -6.46043 0.50324 0.55090 1.42565 1.46245 1.54485 1.79544 2.31935 2.59509 2.91509 3.05558 3.27904 3.66791 3.72379 3.93525 4.13250 4.16001 4.27168 4.42544 4.62092 4.62972 4.67137 4.76356 4.93793 4.97223 5.12416 5.16354 5.18150 5.25722 5.30097 5.48865 5.59029 5.64210 5.67661 5.71311 5.85397 6.16820 6.63364 6.68515 6.91579 7.23768 7.51992 8.82330 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025011 B = 0.004953 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.253963 B = 5651.499290 C = 6171.418846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.184 3.816 3 O -0.569 6.569 4 C -0.162 4.162 5 C 0.497 3.503 6 O -0.586 6.586 7 N -0.708 5.708 8 C 0.271 3.729 9 C -0.557 4.557 10 H 0.083 0.917 11 C 0.005 3.995 12 N -0.931 5.931 13 Si 0.983 3.017 14 H -0.262 1.262 15 H -0.286 1.286 16 H -0.262 1.262 17 C -0.096 4.096 18 C -0.120 4.120 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.133 4.133 22 C -0.129 4.129 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.382 0.618 27 H 0.124 0.876 28 H 0.128 0.872 29 H 0.407 0.593 30 H -0.015 1.015 31 H -0.014 1.014 32 H 0.268 0.732 33 H 0.123 0.877 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.962 -0.425 -5.382 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.143 3.857 3 O -0.379 6.379 4 C -0.202 4.202 5 C 0.285 3.715 6 O -0.468 6.468 7 N -0.357 5.357 8 C 0.148 3.852 9 C -0.595 4.595 10 H 0.101 0.899 11 C -0.195 4.195 12 N -0.570 5.570 13 Si 0.806 3.194 14 H -0.186 1.186 15 H -0.212 1.212 16 H -0.187 1.187 17 C -0.096 4.096 18 C -0.138 4.138 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.147 4.147 23 H 0.111 0.889 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.234 0.766 27 H 0.142 0.858 28 H 0.146 0.854 29 H 0.243 0.757 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.963 0.106 -6.032 18.004 hybrid contribution 1.536 -0.616 0.686 1.791 sum -15.427 -0.510 -5.347 16.336 Atomic orbital electron populations 1.21773 0.89163 1.04052 1.03605 1.19911 0.95642 0.81150 0.89038 1.86341 1.28662 1.26124 1.96725 1.22591 0.90092 1.05602 1.01882 1.21295 0.91237 0.77999 0.80959 1.90579 1.71137 1.48181 1.36925 1.46205 1.08436 1.52315 1.28777 1.18462 0.76422 0.94646 0.95713 1.21606 0.93185 1.33457 1.11237 0.89887 1.26045 0.96829 0.96948 0.99682 1.70131 1.03013 1.45546 1.38277 0.85239 0.76845 0.78946 0.78395 1.18636 1.21181 1.18684 1.20485 0.98876 0.94223 0.96008 1.21060 0.99640 1.00145 0.92957 1.21396 0.99416 0.95095 0.98872 1.21411 1.00429 0.94707 0.98810 1.21390 0.99455 1.00770 0.93502 1.21193 1.00265 0.94382 0.98837 0.88941 0.90213 0.91823 0.76620 0.85776 0.85374 0.75727 0.99691 0.99646 0.92310 0.85870 0.84401 0.84327 0.84963 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.82 71.98 0.64 -1.82 16 2 C 0.18 4.82 0.95 -11.54 -0.01 4.81 16 3 O -0.57 -17.58 11.95 -132.49 -1.58 -19.16 16 4 C -0.16 -4.07 4.44 29.85 0.13 -3.93 16 5 C 0.50 18.57 6.57 87.66 0.58 19.15 16 6 O -0.59 -26.65 12.77 13.46 0.17 -26.48 16 7 N -0.71 -28.70 5.55 -466.77 -2.59 -31.29 16 8 C 0.27 14.62 5.43 85.63 0.46 15.08 16 9 C -0.56 -29.97 9.28 25.60 0.24 -29.73 16 10 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 11 C 0.00 0.25 5.46 84.66 0.46 0.72 16 12 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 13 Si 0.98 42.00 29.54 68.60 2.03 44.03 16 14 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 15 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 17 C -0.10 -2.82 3.16 -19.86 -0.06 -2.88 16 18 C -0.12 -3.57 9.35 22.27 0.21 -3.36 16 19 C -0.13 -3.54 10.05 22.27 0.22 -3.31 16 20 C -0.14 -3.63 10.05 22.27 0.22 -3.40 16 21 C -0.13 -3.76 10.05 22.27 0.22 -3.53 16 22 C -0.13 -3.76 8.31 22.27 0.18 -3.57 16 23 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 26 H 0.38 13.33 6.69 -74.05 -0.50 12.83 16 27 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.13 2.44 6.74 -2.39 -0.02 2.42 16 29 H 0.41 13.56 8.32 -92.71 -0.77 12.79 16 30 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 33 H 0.12 3.51 7.48 -2.91 -0.02 3.49 16 34 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.13 3.26 6.21 -2.91 -0.02 3.24 16 Total: -1.00 -70.56 310.71 1.63 -68.94 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.18 Total: 35.58 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 3.50 Total: -15.79 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.30 Total: -87.11 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.41 Total: -45.64 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -70.56 1.63 -68.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.103 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds