Wall clock time and date at job start Sun Mar 29 2020 23:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47212 * 2 1 4 4 C 1.53005 * 109.47174 * 239.99857 * 2 1 3 5 5 C 1.50696 * 109.47050 * 59.99926 * 4 2 1 6 6 O 1.21285 * 120.00128 * 0.02562 * 5 4 2 7 7 N 1.34769 * 120.00255 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00304 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47074 * 179.97438 * 8 7 5 10 10 H 1.07995 * 120.00385 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99575 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99832 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00265 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47045 * 89.99974 * 13 11 9 15 15 H 1.48499 * 109.47165 * 210.00172 * 13 11 9 16 16 H 1.48500 * 109.47141 * 330.00294 * 13 11 9 17 17 C 1.50706 * 109.47186 * 120.00268 * 2 1 3 18 18 C 1.38233 * 120.00109 * 89.72231 * 17 2 1 19 19 C 1.38238 * 119.99749 * 179.78525 * 18 17 2 20 20 C 1.38234 * 120.00078 * 0.44989 * 19 18 17 21 21 C 1.38238 * 120.00032 * 359.80374 * 20 19 18 22 22 C 1.38235 * 120.00123 * 359.97438 * 21 20 19 23 23 H 1.08997 * 109.46785 * 299.99904 * 1 2 3 24 24 H 1.09002 * 109.47171 * 59.99883 * 1 2 3 25 25 H 1.09004 * 109.47223 * 180.02562 * 1 2 3 26 26 H 0.96705 * 113.99611 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47197 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.47101 * 300.00440 * 4 2 1 29 29 H 0.97005 * 119.99929 * 0.02562 * 7 5 4 30 30 H 1.09001 * 109.47418 * 300.00762 * 8 7 5 31 31 H 1.09001 * 109.46578 * 60.00324 * 8 7 5 32 32 H 0.96997 * 120.00012 * 179.97438 * 12 11 9 33 33 H 1.08004 * 119.99934 * 0.02562 * 18 17 2 34 34 H 1.07999 * 119.99925 * 180.27297 * 19 18 17 35 35 H 1.08002 * 120.00276 * 179.83134 * 20 19 18 36 36 H 1.08000 * 120.00524 * 180.02562 * 21 20 19 37 37 H 1.07999 * 120.00181 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4797 6 8 0.8408 0.9754 -2.3685 7 7 1.8628 -0.4717 -3.7038 8 6 1.3740 0.2186 -4.9000 9 6 1.8764 -0.4918 -6.1304 10 1 2.4974 -1.3698 -6.0314 11 6 1.5433 -0.0206 -7.3827 12 7 1.9814 -0.6408 -8.4565 13 14 0.4687 1.4977 -7.5541 14 1 1.3268 2.7088 -7.5992 15 1 -0.3229 1.4049 -8.8070 16 1 -0.4519 1.5863 -6.3923 17 6 2.0324 -0.7105 1.2305 18 6 2.2573 -2.0740 1.1979 19 6 2.7223 -2.7249 2.3253 20 6 2.9535 -2.0139 3.4879 21 6 2.7236 -0.6512 3.5221 22 6 2.2630 0.0006 2.3934 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 2.9704 1.4235 -0.0004 27 1 3.1300 -0.7217 -1.2490 28 1 1.6766 -1.7489 -1.2493 29 1 2.4199 -1.2608 -3.7928 30 1 0.2840 0.2187 -4.8996 31 1 1.7373 1.2463 -4.9003 32 1 1.7468 -0.3096 -9.3375 33 1 2.0734 -2.6301 0.2905 34 1 2.9023 -3.7895 2.2985 35 1 3.3143 -2.5228 4.3696 36 1 2.9046 -0.0955 4.4303 37 1 2.0829 1.0651 2.4201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787627716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:32 Heat of formation + Delta-G solvation = -65.739119 kcal Electronic energy + Delta-G solvation = -19436.095715 eV Core-core repulsion = 16371.164330 eV Total energy + Delta-G solvation = -3064.931385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.28420 -38.79661 -36.81805 -34.24074 -32.83274 -32.33440 -31.04859 -29.95192 -28.68520 -26.97233 -23.55959 -22.74346 -21.97253 -20.39605 -19.69158 -18.03797 -16.92458 -16.49339 -15.77507 -15.57221 -15.26461 -14.83719 -14.61733 -14.28285 -13.96034 -13.77250 -13.50476 -12.90756 -12.78304 -12.47705 -12.30508 -12.14199 -11.97500 -11.62181 -11.44635 -11.17182 -11.00773 -10.79476 -10.68421 -10.04794 -9.96426 -9.49188 -9.10006 -8.99741 -8.90843 -8.76814 -8.09767 -6.21601 -4.23774 1.14670 1.22796 3.25332 3.28773 3.33922 3.42711 3.59476 3.88129 4.31403 4.33887 4.61471 4.69326 4.82815 4.89081 4.96143 5.09913 5.14297 5.29386 5.38966 5.51664 5.63014 5.74903 5.76935 5.85879 5.96448 6.08735 6.28924 6.33295 6.42501 6.58409 6.81745 6.83441 7.08743 7.26684 7.41502 7.75969 8.14719 8.53537 8.75840 8.98862 9.38976 10.90392 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042192 B = 0.003918 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.467846 B = 7144.330058 C = 7556.793217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.194 3.806 3 O -0.534 6.534 4 C -0.171 4.171 5 C 0.500 3.500 6 O -0.536 6.536 7 N -0.709 5.709 8 C 0.221 3.779 9 C -0.544 4.544 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.260 1.260 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.103 4.103 23 H 0.056 0.944 24 H 0.100 0.900 25 H 0.061 0.939 26 H 0.369 0.631 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.395 0.605 30 H 0.024 0.976 31 H 0.020 0.980 32 H 0.267 0.733 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 -3.276 22.343 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.153 3.847 3 O -0.338 6.338 4 C -0.211 4.211 5 C 0.285 3.715 6 O -0.414 6.414 7 N -0.358 5.358 8 C 0.099 3.901 9 C -0.581 4.581 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.531 5.531 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.185 1.185 17 C -0.112 4.112 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.121 4.121 23 H 0.075 0.925 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.215 0.785 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.228 0.772 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.996 -2.428 22.177 22.332 hybrid contribution 0.518 0.013 -0.279 0.589 sum 1.515 -2.415 21.898 22.083 Atomic orbital electron populations 1.21992 0.91385 1.02057 1.04924 1.19613 0.95440 0.81523 0.88132 1.86705 1.25779 1.24697 1.96601 1.22505 1.02719 1.01434 0.94460 1.20255 0.81465 0.85160 0.84600 1.90629 1.38115 1.26202 1.86456 1.46213 1.52252 1.31379 1.05971 1.19465 0.95076 0.93060 0.82515 1.21106 1.33745 1.14352 0.88944 0.90325 1.24806 0.95395 0.96993 0.95474 1.69883 1.44876 1.40244 0.98054 0.86807 0.81324 0.83292 0.78208 1.19853 1.20926 1.18479 1.20686 0.99646 0.94445 0.96424 1.21173 0.99219 0.94005 0.98770 1.21154 0.99735 0.99904 0.93156 1.21171 1.00440 0.94503 0.98072 1.21166 0.99869 0.94723 0.98324 1.21053 0.98384 1.00575 0.92083 0.92475 0.88193 0.92044 0.78513 0.88947 0.88351 0.77219 0.95789 0.96218 0.92273 0.85625 0.86041 0.86290 0.86153 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.50 37.16 0.32 -1.76 16 2 C 0.19 2.53 0.81 -91.77 -0.07 2.46 16 3 O -0.53 -7.61 10.86 -53.50 -0.58 -8.19 16 4 C -0.17 -2.22 4.26 -27.88 -0.12 -2.34 16 5 C 0.50 9.21 7.39 -10.99 -0.08 9.13 16 6 O -0.54 -11.81 12.96 -12.71 -0.16 -11.97 16 7 N -0.71 -14.13 5.55 -61.47 -0.34 -14.48 16 8 C 0.22 5.44 4.50 -5.19 -0.02 5.41 16 9 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 10 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 12 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 13 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 17 C -0.11 -1.24 4.80 -104.62 -0.50 -1.75 16 18 C -0.11 -1.14 9.14 -39.58 -0.36 -1.50 16 19 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 20 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 21 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 22 C -0.10 -1.08 9.35 -39.58 -0.37 -1.45 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.10 1.74 5.51 -51.93 -0.29 1.45 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.37 4.02 9.04 45.56 0.41 4.43 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.08 6.51 -51.93 -0.34 0.74 16 29 H 0.39 6.90 8.32 -40.82 -0.34 6.57 16 30 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 31 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.13 1.11 6.17 -52.48 -0.32 0.78 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.33 7.48 -52.49 -0.39 0.93 16 LS Contribution 308.30 15.07 4.65 4.65 Total: -1.00 -32.97 308.30 -7.33 -40.30 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.15 Total: 8.05 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -2.85 Total: -9.45 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.43 Total: -40.27 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.75 Total: -20.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.97 -7.33 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787627716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.435 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds