Wall clock time and date at job start Sun Mar 29 2020 23:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46995 * 2 1 4 4 H 1.08997 * 109.47005 * 308.31875 * 3 2 1 5 5 C 1.50701 * 109.46633 * 188.32033 * 3 2 1 6 6 C 1.38232 * 119.99886 * 284.94222 * 5 3 2 7 7 C 1.38237 * 119.99610 * 179.79378 * 6 5 3 8 8 C 1.38237 * 120.00247 * 0.43788 * 7 6 5 9 9 C 1.38234 * 119.99740 * 359.81570 * 8 7 6 10 10 C 1.38233 * 119.99722 * 105.21879 * 5 3 2 11 11 N 1.46497 * 109.46847 * 68.32425 * 3 2 1 12 12 C 1.36941 * 120.00479 * 9.96313 * 11 3 2 13 13 H 1.08002 * 119.99810 * 315.59659 * 12 11 3 14 14 C 1.38811 * 119.99845 * 135.58259 * 12 11 3 15 15 N 1.31619 * 119.99452 * 174.56252 * 14 12 11 16 16 Si 1.86798 * 120.00315 * 354.57050 * 14 12 11 17 17 H 1.48496 * 109.47284 * 89.70740 * 16 14 12 18 18 H 1.48496 * 109.47006 * 209.70922 * 16 14 12 19 19 H 1.48504 * 109.46650 * 329.70472 * 16 14 12 20 20 C 1.46500 * 120.00004 * 189.97026 * 11 3 2 21 21 C 1.50699 * 109.47562 * 91.08728 * 20 11 3 22 22 O 1.20823 * 119.99658 * 354.99095 * 21 20 11 23 23 O 1.34226 * 119.99951 * 174.99183 * 21 20 11 24 24 H 1.09001 * 109.47562 * 65.41509 * 1 2 3 25 25 H 1.08997 * 109.47227 * 185.41720 * 1 2 3 26 26 H 1.09001 * 109.46917 * 305.41979 * 1 2 3 27 27 H 1.09001 * 109.47032 * 240.00573 * 2 1 3 28 28 H 1.08998 * 109.46988 * 119.99859 * 2 1 3 29 29 H 1.07999 * 120.00438 * 0.02562 * 6 5 3 30 30 H 1.08002 * 120.00104 * 180.27696 * 7 6 5 31 31 H 1.07997 * 120.00241 * 179.83089 * 8 7 6 32 32 H 1.08001 * 120.00218 * 180.02562 * 9 8 7 33 33 H 1.08001 * 119.99905 * 359.97438 * 10 5 3 34 34 H 0.97001 * 119.99648 * 180.02562 * 15 14 12 35 35 H 1.09007 * 109.46706 * 331.08602 * 20 11 3 36 36 H 1.08997 * 109.47080 * 211.09292 * 20 11 3 37 37 H 0.96705 * 116.99654 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5604 1.9975 -0.8063 5 6 3.5329 1.4475 -0.2056 6 6 4.3743 1.0856 0.8297 7 6 5.7436 1.0860 0.6397 8 6 6.2717 1.4570 -0.5827 9 6 5.4304 1.8239 -1.6164 10 6 4.0610 1.8193 -1.4278 11 7 1.7218 2.0730 1.2835 12 6 1.2501 1.3138 2.3211 13 1 0.4854 0.5721 2.1434 14 6 1.7552 1.4973 3.6010 15 7 1.2287 0.8452 4.6158 16 14 3.1817 2.6698 3.8830 17 1 2.6566 4.0316 4.1567 18 1 3.9821 2.2052 5.0443 19 1 4.0406 2.7045 2.6720 20 6 1.9079 3.5157 1.4572 21 6 0.6314 4.2334 1.1016 22 8 -0.3050 3.6146 0.6543 23 8 0.5347 5.5600 1.2817 24 1 -0.3634 0.4275 -0.9345 25 1 -0.3633 -1.0230 0.0970 26 1 -0.3633 0.5956 0.8375 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9619 0.7990 1.7858 30 1 6.4009 0.7990 1.4472 31 1 7.3416 1.4599 -0.7303 32 1 5.8430 2.1133 -2.5716 33 1 3.4037 2.1059 -2.2354 34 1 1.5814 0.9737 5.5103 35 1 2.7115 3.8593 0.8057 36 1 2.1662 3.7264 2.4949 37 1 -0.3040 5.9759 1.0395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829021173.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:00 Heat of formation + Delta-G solvation = -33.784045 kcal Electronic energy + Delta-G solvation = -20854.598378 eV Core-core repulsion = 17791.052669 eV Total energy + Delta-G solvation = -3063.545709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.57745 -38.89817 -36.58594 -35.20953 -32.81497 -31.50770 -30.52530 -30.34459 -27.29619 -25.92258 -22.88563 -22.13781 -21.49589 -21.02988 -19.37467 -17.46045 -17.04158 -16.48105 -15.77428 -15.54684 -14.99126 -14.85610 -14.53130 -13.95719 -13.36283 -12.97296 -12.89495 -12.72214 -12.46491 -12.24451 -12.19635 -11.91892 -11.30096 -11.22932 -10.94252 -10.82788 -10.60557 -10.32675 -10.16688 -10.12610 -9.88876 -9.53258 -9.40235 -8.71370 -8.43224 -8.18275 -6.99798 -6.06776 -3.68239 1.79917 1.87513 3.02381 3.18706 3.36343 3.39030 3.75416 4.24595 4.35015 4.83708 5.15482 5.30257 5.35076 5.41505 5.63083 5.82429 5.87425 5.95140 5.97278 6.00544 6.08337 6.16615 6.20136 6.37876 6.56794 6.58067 6.61264 6.72201 6.87958 7.00180 7.11926 7.16817 7.25611 7.31722 7.49882 7.93511 8.34294 8.64701 8.84059 9.52730 9.91023 11.04368 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.009840 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.599585 B = 2844.892971 C = 3155.509659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.050 0.950 5 C -0.091 4.091 6 C -0.083 4.083 7 C -0.132 4.132 8 C -0.133 4.133 9 C -0.132 4.132 10 C -0.123 4.123 11 N -0.567 5.567 12 C -0.276 4.276 13 H 0.103 0.897 14 C 0.040 3.960 15 N -0.898 5.898 16 Si 0.866 3.134 17 H -0.284 1.284 18 H -0.299 1.299 19 H -0.247 1.247 20 C 0.141 3.859 21 C 0.443 3.557 22 O -0.503 6.503 23 O -0.536 6.536 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.266 0.734 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 3.430 -9.398 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.068 0.932 5 C -0.093 4.093 6 C -0.101 4.101 7 C -0.150 4.150 8 C -0.151 4.151 9 C -0.150 4.150 10 C -0.142 4.142 11 N -0.287 5.287 12 C -0.405 4.405 13 H 0.120 0.880 14 C -0.162 4.162 15 N -0.538 5.538 16 Si 0.697 3.303 17 H -0.212 1.212 18 H -0.227 1.227 19 H -0.171 1.171 20 C 0.012 3.988 21 C 0.281 3.719 22 O -0.389 6.389 23 O -0.347 6.347 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.146 2.966 -9.226 11.476 hybrid contribution 0.177 1.163 0.255 1.204 sum 6.324 4.129 -8.971 11.727 Atomic orbital electron populations 1.21941 0.95665 1.00715 1.02499 1.21506 0.96262 0.94891 1.01487 1.19576 0.87353 0.94332 0.87919 0.93175 1.20995 0.98283 0.97067 0.92964 1.21303 0.92484 0.96675 0.99621 1.21168 0.95646 1.01082 0.97074 1.20991 0.98972 1.01297 0.93859 1.20968 0.93700 1.01791 0.98559 1.21044 0.94910 1.01146 0.97095 1.43923 1.74583 0.99024 1.11190 1.19166 1.17879 1.17746 0.85702 0.87990 1.25661 0.96919 0.97165 0.96425 1.69726 1.41928 1.42674 0.99494 0.87235 0.84385 0.80401 0.78248 1.21237 1.22735 1.17118 1.21201 0.90404 0.85526 1.01712 1.26180 0.92859 0.78998 0.73822 1.90603 1.40033 1.67021 1.41210 1.84696 1.43458 1.25656 1.80924 0.94589 0.94248 0.89270 0.93382 0.89930 0.84754 0.86882 0.87083 0.86999 0.86782 0.92409 0.89754 0.89704 0.75346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.30 37.16 0.35 -2.54 16 2 C -0.10 -1.95 4.85 -26.73 -0.13 -2.08 16 3 C 0.21 4.14 2.52 -69.08 -0.17 3.97 16 4 H 0.05 0.97 7.94 -51.93 -0.41 0.55 16 5 C -0.09 -1.63 4.38 -104.63 -0.46 -2.09 16 6 C -0.08 -1.54 7.77 -39.58 -0.31 -1.85 16 7 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 8 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 9 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 10 C -0.12 -1.92 9.67 -39.58 -0.38 -2.30 16 11 N -0.57 -12.46 1.03 -168.34 -0.17 -12.64 16 12 C -0.28 -7.03 7.45 -15.06 -0.11 -7.15 16 13 H 0.10 2.80 4.90 -52.49 -0.26 2.55 16 14 C 0.04 1.06 5.48 -17.43 -0.10 0.97 16 15 N -0.90 -25.92 13.97 55.49 0.78 -25.15 16 16 Si 0.87 20.28 23.18 -169.99 -3.94 16.34 16 17 H -0.28 -6.69 6.77 56.52 0.38 -6.30 16 18 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.25 -5.34 5.05 56.52 0.29 -5.06 16 20 C 0.14 2.95 4.77 -5.19 -0.02 2.93 16 21 C 0.44 9.10 8.39 36.00 0.30 9.40 16 22 O -0.50 -11.57 17.20 -18.75 -0.32 -11.89 16 23 O -0.54 -9.07 13.42 -39.25 -0.53 -9.59 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 2.02 5.33 -51.93 -0.28 1.74 16 27 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 28 H 0.08 1.72 7.10 -51.93 -0.37 1.35 16 29 H 0.13 2.82 5.77 -52.49 -0.30 2.52 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.11 1.57 8.00 -52.49 -0.42 1.15 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.08 1.59 7.69 -51.92 -0.40 1.19 16 36 H 0.09 1.91 2.73 -51.93 -0.14 1.77 16 37 H 0.39 4.74 9.10 45.56 0.41 5.16 16 LS Contribution 297.88 15.07 4.49 4.49 Total: -1.00 -29.82 297.88 -5.90 -35.72 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -3.97 Total: 10.58 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.23 Total: -7.86 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.60 Total: -37.78 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.85 Total: -21.49 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -3.94 Total: 16.34 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.82 -5.90 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829021173.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.938 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds