Wall clock time and date at job start Sun Mar 29 2020 23:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 H 1.08999 * 109.46983 * 305.00292 * 3 2 1 5 5 C 1.50700 * 109.47433 * 185.00059 * 3 2 1 6 6 H 1.07995 * 120.00109 * 240.00043 * 5 3 2 7 7 C 1.37873 * 119.99681 * 60.00380 * 5 3 2 8 8 N 1.31521 * 120.00364 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99840 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47183 * 60.00003 * 9 7 5 11 11 H 1.48496 * 109.47283 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47136 * 299.99823 * 9 7 5 13 13 N 1.46506 * 109.46691 * 65.00031 * 3 2 1 14 14 C 1.34773 * 119.99969 * 274.72265 * 13 3 2 15 15 O 1.21778 * 120.00467 * 0.02562 * 14 13 3 16 16 C 1.41555 * 119.99857 * 180.02562 * 14 13 3 17 17 C 1.35623 * 120.00082 * 180.02562 * 16 14 13 18 18 C 1.50696 * 120.00310 * 180.02562 * 17 16 14 19 19 C 1.41617 * 119.99819 * 0.02562 * 17 16 14 20 20 C 1.37948 * 126.10406 * 115.00163 * 19 17 16 21 21 C 1.40313 * 106.52492 * 179.97438 * 20 19 17 22 22 C 1.35155 * 107.20648 * 359.97438 * 21 20 19 23 23 O 1.34013 * 109.03411 * 359.75763 * 22 21 20 24 24 H 1.09005 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46886 * 299.99799 * 1 2 3 26 26 H 1.08997 * 109.46969 * 59.99876 * 1 2 3 27 27 H 1.09007 * 109.46841 * 240.00223 * 2 1 3 28 28 H 1.09000 * 109.47546 * 120.00589 * 2 1 3 29 29 H 0.96994 * 119.99652 * 180.02562 * 8 7 5 30 30 H 0.97005 * 119.99811 * 95.00317 * 13 3 2 31 31 H 1.07998 * 119.99724 * 0.02562 * 16 14 13 32 32 H 1.08997 * 109.47238 * 89.99996 * 18 17 16 33 33 H 1.09003 * 109.47254 * 210.00202 * 18 17 16 34 34 H 1.09002 * 109.46932 * 329.99959 * 18 17 16 35 35 H 1.07997 * 126.73730 * 359.97416 * 20 19 17 36 36 H 1.08000 * 126.39367 * 179.97438 * 21 20 19 37 37 H 1.07997 * 125.47849 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0050 0.8800 -1.3812 10 1 6.5967 0.1451 -0.2345 11 1 6.3978 0.2158 -2.6499 12 1 6.5005 2.2799 -1.3808 13 7 1.6525 2.0974 1.2519 14 6 0.4373 2.6692 1.3651 15 8 -0.3387 2.6411 0.4271 16 6 0.0631 3.3024 2.5746 17 6 -1.1599 3.8774 2.6887 18 6 -1.5582 4.5521 3.9760 19 6 -2.0628 3.8437 1.5982 20 6 -3.2765 3.1889 1.5677 21 6 -3.8262 3.4260 0.2986 22 6 -2.9482 4.1981 -0.3794 23 8 -1.8923 4.4521 0.4059 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8293 -0.0617 -2.9496 30 1 2.2720 2.1230 1.9979 31 1 0.7515 3.3277 3.4063 32 1 -1.2692 5.6024 3.9403 33 1 -2.6377 4.4764 4.1071 34 1 -1.0558 4.0652 4.8119 35 1 -3.7172 2.6077 2.3642 36 1 -4.7738 3.0600 -0.0678 37 1 -3.0784 4.5559 -1.3900 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832214002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:34 Heat of formation + Delta-G solvation = -28.017683 kcal Electronic energy + Delta-G solvation = -20151.688411 eV Core-core repulsion = 17088.392751 eV Total energy + Delta-G solvation = -3063.295661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.24741 -40.76309 -37.30015 -35.93103 -34.27271 -33.66236 -32.85894 -29.91729 -29.35513 -28.33642 -25.11750 -23.78322 -22.43279 -22.28171 -21.19798 -20.22124 -19.13636 -17.81201 -17.51477 -16.95926 -16.67625 -16.19859 -16.18088 -15.18322 -14.74229 -14.59099 -14.29102 -13.91687 -13.75778 -13.67061 -13.49267 -13.37161 -13.22846 -13.12877 -12.89560 -12.68558 -12.65859 -12.18576 -12.04453 -11.60380 -11.06172 -10.75254 -10.67149 -10.51942 -10.27375 -9.53359 -8.91027 -8.15998 -6.33627 -0.09602 1.05740 1.43826 1.45949 1.53709 1.82356 2.37577 2.38395 2.65710 2.85787 3.13421 3.87542 4.03911 4.23634 4.28745 4.45327 4.47537 4.55672 4.57296 4.74395 4.80336 4.87815 5.00220 5.02538 5.07590 5.17773 5.24114 5.36166 5.44005 5.50052 5.56859 5.66135 5.76862 5.81097 5.98401 6.17646 6.35328 6.75131 7.07191 7.34270 7.66918 8.89258 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028512 B = 0.005289 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.813948 B = 5292.589054 C = 5667.724919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C 0.282 3.718 4 H -0.006 1.006 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.703 5.703 14 C 0.514 3.486 15 O -0.570 6.570 16 C -0.202 4.202 17 C 0.020 3.980 18 C -0.107 4.107 19 C 0.017 3.983 20 C -0.209 4.209 21 C -0.222 4.222 22 C -0.052 4.052 23 O -0.172 6.172 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.021 0.979 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.171 0.829 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 6.753 12.279 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.157 4.157 3 C 0.178 3.822 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.352 5.352 14 C 0.304 3.696 15 O -0.453 6.453 16 C -0.222 4.222 17 C 0.017 3.983 18 C -0.163 4.163 19 C -0.033 4.033 20 C -0.228 4.228 21 C -0.241 4.241 22 C -0.121 4.121 23 O -0.066 6.066 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.188 0.812 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.180 0.820 36 H 0.184 0.816 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -10.126 6.792 11.361 16.666 hybrid contribution 1.075 -0.413 -0.623 1.310 sum -9.051 6.379 10.738 15.425 Atomic orbital electron populations 1.21601 0.97016 0.98717 1.00017 1.21761 0.93617 0.99289 1.01069 1.18270 0.93442 0.88990 0.81500 0.98842 1.21574 0.91548 1.38908 1.06700 0.91133 1.25790 1.03400 0.94360 0.94986 1.70055 1.37162 1.38384 1.09887 0.85420 0.79023 0.78424 0.77595 1.18817 1.21169 1.19710 1.46194 1.15646 1.55936 1.17436 1.17775 0.82413 0.79851 0.89524 1.90812 1.51401 1.61160 1.41888 1.22456 0.98381 1.02670 0.98740 1.19777 0.90852 0.93747 0.93895 1.21024 1.03606 1.00846 0.90871 1.19934 0.96407 1.01489 0.85505 1.22222 0.94982 1.05496 1.00070 1.21871 1.02837 1.04083 0.95283 1.24572 0.86378 1.03446 0.97704 1.84143 1.40961 1.58915 1.22619 0.93936 0.93909 0.95965 0.91186 0.94204 0.92646 0.76302 0.81152 0.88665 0.89798 0.87864 0.82039 0.81618 0.76720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.52 71.98 0.61 -4.87 16 2 C -0.12 -6.03 5.45 30.59 0.17 -5.86 16 3 C 0.28 14.87 2.24 44.24 0.10 14.97 16 4 H -0.01 -0.40 7.57 -2.39 -0.02 -0.42 16 5 C -0.55 -29.68 8.73 25.60 0.22 -29.45 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.80 5.29 84.65 0.45 1.24 16 8 N -0.92 -53.53 11.29 21.45 0.24 -53.29 16 9 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 13 N -0.70 -29.96 5.01 -455.12 -2.28 -32.24 16 14 C 0.51 21.07 6.09 85.06 0.52 21.59 16 15 O -0.57 -27.55 9.99 17.71 0.18 -27.38 16 16 C -0.20 -5.95 9.49 22.48 0.21 -5.73 16 17 C 0.02 0.54 5.78 -19.64 -0.11 0.42 16 18 C -0.11 -1.65 10.02 71.23 0.71 -0.94 16 19 C 0.02 0.56 4.36 23.04 0.10 0.66 16 20 C -0.21 -6.22 10.90 22.71 0.25 -5.97 16 21 C -0.22 -6.42 10.87 22.06 0.24 -6.18 16 22 C -0.05 -1.66 12.06 67.11 0.81 -0.85 16 23 O -0.17 -6.48 8.93 16.23 0.14 -6.34 16 24 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.04 1.96 5.67 -2.39 -0.01 1.95 16 26 H 0.02 1.12 7.85 -2.39 -0.02 1.10 16 27 H 0.07 3.98 5.95 -2.38 -0.01 3.97 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.40 14.42 8.50 -92.70 -0.79 13.63 16 31 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 34 H 0.10 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 36 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.22 5.28 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -72.35 310.29 4.88 -67.48 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.28 Total: 28.06 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.28 Total: -20.98 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -2.04 Total: -85.53 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: 0.32 Total: -33.71 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -72.35 4.88 -67.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832214002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.461 kcal (2) G-P(sol) polarization free energy of solvation -72.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds