Wall clock time and date at job start Sun Mar 29 2020 23:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.47048 * 2 1 4 4 H 1.08996 * 109.46958 * 305.00115 * 3 2 1 5 5 C 1.50702 * 109.46911 * 184.99924 * 3 2 1 6 6 H 1.07996 * 119.99580 * 239.99854 * 5 3 2 7 7 C 1.37877 * 119.99727 * 60.00228 * 5 3 2 8 8 N 1.31514 * 120.00407 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99616 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47374 * 59.99958 * 9 7 5 11 11 H 1.48503 * 109.47180 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47363 * 299.99687 * 9 7 5 13 13 N 1.46493 * 109.47135 * 64.99992 * 3 2 1 14 14 C 1.34782 * 120.00073 * 274.99757 * 13 3 2 15 15 O 1.21776 * 120.00019 * 0.02562 * 14 13 3 16 16 C 1.41557 * 119.99887 * 179.97438 * 14 13 3 17 17 C 1.35627 * 119.99267 * 185.67622 * 16 14 13 18 18 C 1.50691 * 120.00467 * 5.69216 * 17 16 14 19 19 C 1.41613 * 119.99264 * 185.68948 * 17 16 14 20 20 C 1.37946 * 126.10173 * 115.02634 * 19 17 16 21 21 C 1.40315 * 106.52971 * 179.97438 * 20 19 17 22 22 C 1.35148 * 107.20551 * 0.02562 * 21 20 19 23 23 O 1.34024 * 109.03451 * 359.97438 * 22 21 20 24 24 H 1.08994 * 109.47557 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47130 * 300.00370 * 1 2 3 26 26 H 1.09003 * 109.47324 * 60.00145 * 1 2 3 27 27 H 1.09002 * 109.47027 * 240.00339 * 2 1 3 28 28 H 1.09003 * 109.47122 * 119.99340 * 2 1 3 29 29 H 0.97001 * 119.99952 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00356 * 94.99983 * 13 3 2 31 31 H 1.07998 * 120.00187 * 5.67925 * 16 14 13 32 32 H 1.09004 * 109.47454 * 174.79566 * 18 17 16 33 33 H 1.09005 * 109.47058 * 294.79256 * 18 17 16 34 34 H 1.08999 * 109.47400 * 54.79677 * 18 17 16 35 35 H 1.08001 * 126.73646 * 359.97438 * 20 19 17 36 36 H 1.07996 * 126.40009 * 180.02562 * 21 20 19 37 37 H 1.08001 * 125.48473 * 180.26751 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0048 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2348 11 1 6.3978 0.2168 -2.6503 12 1 6.4994 2.2815 -1.3822 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6645 1.3669 15 8 -0.3428 2.6319 0.4305 16 6 0.0604 3.2969 2.5767 17 6 -1.2026 3.7656 2.7339 18 6 -2.2418 3.5008 1.6753 19 6 -1.5446 4.5037 3.8930 20 6 -1.9228 5.8298 3.9299 21 6 -2.1659 6.1382 5.2770 22 6 -1.9319 5.0159 5.9926 23 8 -1.5589 4.0354 5.1584 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8901 29 1 3.8293 -0.0617 -2.9495 30 1 2.2719 2.1233 1.9977 31 1 0.7802 3.4062 3.3743 32 1 -3.2093 3.8701 2.0154 33 1 -1.9610 4.0122 0.7545 34 1 -2.3069 2.4286 1.4901 35 1 -2.0138 6.4993 3.0874 36 1 -2.4813 7.0939 5.6689 37 1 -2.0339 4.9226 7.0637 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832214004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:38 Heat of formation + Delta-G solvation = -28.668944 kcal Electronic energy + Delta-G solvation = -19506.078643 eV Core-core repulsion = 16442.754742 eV Total energy + Delta-G solvation = -3063.323901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.45805 -40.97853 -37.40048 -35.84017 -34.29743 -33.87044 -32.87381 -30.07153 -29.34357 -28.26267 -25.22599 -24.18933 -22.57430 -22.11656 -21.18157 -20.38485 -18.71732 -18.15476 -17.43798 -17.12919 -16.85129 -16.31520 -15.94405 -15.74871 -14.96673 -14.57837 -14.26743 -14.08057 -13.84858 -13.64361 -13.46974 -13.40803 -13.27800 -13.14337 -12.87169 -12.73428 -12.64182 -12.16493 -12.02852 -11.56061 -11.04475 -10.91829 -10.57346 -10.47539 -10.42105 -9.55888 -9.20296 -8.14843 -6.32035 -0.17047 0.74790 1.45066 1.46698 1.54472 1.67001 2.12356 2.38116 2.52370 2.85222 3.14517 3.82576 3.89642 4.08236 4.21798 4.33704 4.49671 4.52115 4.60120 4.76691 4.78889 4.83291 4.95163 4.99897 5.09713 5.10963 5.20162 5.31602 5.45275 5.47312 5.58476 5.59347 5.66375 5.82787 5.96987 6.11232 6.19227 6.75720 7.02692 7.34771 7.60041 8.90155 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.004157 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.075380 B = 6733.339115 C = 7182.535541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.704 5.704 14 C 0.529 3.471 15 O -0.574 6.574 16 C -0.196 4.196 17 C 0.035 3.965 18 C -0.096 4.096 19 C -0.024 4.024 20 C -0.180 4.180 21 C -0.221 4.221 22 C -0.031 4.031 23 O -0.180 6.180 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.401 0.599 31 H 0.143 0.857 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.270 8.775 15.857 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.352 5.352 14 C 0.320 3.680 15 O -0.458 6.458 16 C -0.217 4.217 17 C 0.032 3.968 18 C -0.152 4.152 19 C -0.073 4.073 20 C -0.199 4.199 21 C -0.240 4.240 22 C -0.099 4.099 23 O -0.076 6.076 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.236 0.764 31 H 0.161 0.839 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.178 0.822 36 H 0.195 0.805 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.689 8.339 15.078 19.768 hybrid contribution 1.284 0.003 -0.209 1.301 sum -8.405 8.342 14.870 19.009 Atomic orbital electron populations 1.21672 0.96801 0.99061 1.00423 1.21781 0.93951 0.99144 1.01095 1.18354 0.93494 0.89193 0.81435 0.98013 1.21571 0.91636 1.39032 1.06697 0.91314 1.25745 1.03228 0.94368 0.95011 1.70036 1.37065 1.38256 1.09834 0.85451 0.79237 0.78411 0.77544 1.19058 1.21087 1.19719 1.46247 1.15630 1.55773 1.17564 1.17346 0.82349 0.79549 0.88789 1.90786 1.51598 1.60916 1.42485 1.22182 0.98142 1.03309 0.98050 1.19249 0.94489 0.91425 0.91642 1.20890 0.95528 1.02558 0.96231 1.19695 1.10154 0.94535 0.82930 1.22473 1.03852 0.94084 0.99461 1.22090 1.07940 1.01447 0.92512 1.25102 1.01577 0.85741 0.97446 1.84179 1.67351 1.39905 1.16163 0.93802 0.93705 0.95182 0.91003 0.94433 0.92596 0.76447 0.83881 0.90861 0.90265 0.91073 0.82168 0.80456 0.74048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.92 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.86 16 3 C 0.28 14.44 2.24 44.25 0.10 14.54 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 5 C -0.55 -29.54 8.73 25.60 0.22 -29.31 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -52.49 11.29 21.45 0.24 -52.25 16 9 Si 0.97 42.39 29.54 68.60 2.03 44.41 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 N -0.70 -29.82 5.01 -455.11 -2.28 -32.10 16 14 C 0.53 21.24 6.07 85.06 0.52 21.75 16 15 O -0.57 -26.17 10.22 -4.59 -0.05 -26.22 16 16 C -0.20 -6.23 9.46 22.48 0.21 -6.02 16 17 C 0.03 1.01 5.77 -19.64 -0.11 0.90 16 18 C -0.10 -2.80 8.31 71.23 0.59 -2.21 16 19 C -0.02 -0.61 6.29 23.03 0.14 -0.46 16 20 C -0.18 -3.81 10.90 22.71 0.25 -3.56 16 21 C -0.22 -3.55 10.87 22.06 0.24 -3.32 16 22 C -0.03 -0.48 12.06 67.11 0.81 0.33 16 23 O -0.18 -4.23 10.67 -6.17 -0.07 -4.30 16 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.04 1.95 5.64 -2.38 -0.01 1.94 16 26 H 0.03 1.44 7.84 -2.39 -0.02 1.43 16 27 H 0.07 4.00 5.95 -2.39 -0.01 3.98 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.40 14.72 8.50 -92.71 -0.79 13.93 16 31 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.07 1.74 7.97 -2.38 -0.02 1.72 16 33 H 0.08 2.57 7.09 -2.38 -0.02 2.55 16 34 H 0.07 2.31 7.41 -2.39 -0.02 2.30 16 35 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.24 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -66.04 310.54 4.36 -61.68 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.29 Total: 25.55 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 4.20 Total: -16.79 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -2.04 Total: -84.35 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.11 Total: -30.51 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -66.04 4.36 -61.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832214004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.012 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds