Wall clock time and date at job start Sun Mar 29 2020 23:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46940 * 2 1 4 4 H 1.08999 * 109.46858 * 55.00277 * 3 2 1 5 5 C 1.50699 * 109.46780 * 174.99536 * 3 2 1 6 6 H 1.08006 * 119.99893 * 120.00030 * 5 3 2 7 7 C 1.37877 * 120.00440 * 299.99913 * 5 3 2 8 8 N 1.31511 * 119.99676 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00064 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46966 * 60.00241 * 9 7 5 11 11 H 1.48500 * 109.46801 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47360 * 300.00349 * 9 7 5 13 13 N 1.46499 * 109.47097 * 294.99644 * 3 2 1 14 14 C 1.34771 * 119.99836 * 85.00126 * 13 3 2 15 15 O 1.21782 * 120.00254 * 0.02562 * 14 13 3 16 16 C 1.41558 * 119.99959 * 180.02562 * 14 13 3 17 17 C 1.35620 * 119.99975 * 185.68320 * 16 14 13 18 18 C 1.50707 * 120.00201 * 5.68047 * 17 16 14 19 19 C 1.41604 * 120.00150 * 185.68673 * 17 16 14 20 20 C 1.37947 * 126.10841 * 115.01835 * 19 17 16 21 21 C 1.40314 * 106.53139 * 180.02562 * 20 19 17 22 22 C 1.35155 * 107.20586 * 359.97438 * 21 20 19 23 23 O 1.34017 * 109.03199 * 0.02562 * 22 21 20 24 24 H 1.09004 * 109.47177 * 300.00319 * 1 2 3 25 25 H 1.09003 * 109.47292 * 60.00485 * 1 2 3 26 26 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47052 * 239.99825 * 2 1 3 28 28 H 1.09007 * 109.46887 * 119.99807 * 2 1 3 29 29 H 0.97008 * 119.99569 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00042 * 265.00446 * 13 3 2 31 31 H 1.07999 * 119.99813 * 5.67566 * 16 14 13 32 32 H 1.08998 * 109.47291 * 174.79638 * 18 17 16 33 33 H 1.09003 * 109.47367 * 294.79980 * 18 17 16 34 34 H 1.08996 * 109.46982 * 54.79811 * 18 17 16 35 35 H 1.08006 * 126.73375 * 0.02562 * 20 19 17 36 36 H 1.07998 * 126.39941 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.48030 * 180.26235 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 3.4061 0.3367 2.1729 9 14 6.0049 0.8801 1.3813 10 1 6.5004 2.2800 1.3810 11 1 6.3976 0.2168 2.6506 12 1 6.5967 0.1453 0.2345 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3425 2.6325 -0.4303 16 6 0.0605 3.2967 -2.5768 17 6 -1.1161 3.9664 -2.6558 18 6 -1.9645 4.1472 -1.4233 19 6 -1.5477 4.4958 -3.8962 20 6 -2.6638 4.1011 -4.6043 21 6 -2.7001 4.8895 -5.7644 22 6 -1.6310 5.7153 -5.7202 23 8 -0.9404 5.4763 -4.5968 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8292 -0.0618 2.9496 30 1 2.2720 2.1231 -1.9978 31 1 0.7117 3.2459 -3.4369 32 1 -2.8175 4.7834 -1.6595 33 1 -2.3199 3.1753 -1.0810 34 1 -1.3697 4.6138 -0.6381 35 1 -3.3710 3.3354 -4.3213 36 1 -3.4439 4.8455 -6.5462 37 1 -1.3766 6.4520 -6.4678 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832214005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:40 Heat of formation + Delta-G solvation = -28.663192 kcal Electronic energy + Delta-G solvation = -19495.156187 eV Core-core repulsion = 16431.832535 eV Total energy + Delta-G solvation = -3063.323652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.45772 -40.97461 -37.40793 -35.83886 -34.29893 -33.86950 -32.86325 -30.06753 -29.36783 -28.24961 -25.21556 -24.20113 -22.57258 -22.11347 -21.18105 -20.38279 -18.71500 -18.14357 -17.43956 -17.14439 -16.83920 -16.37073 -16.01697 -15.61295 -14.83881 -14.60289 -14.52768 -13.94954 -13.84298 -13.61443 -13.46689 -13.43131 -13.28416 -13.14305 -12.86892 -12.73159 -12.64311 -12.15959 -12.03383 -11.55974 -11.04535 -10.91672 -10.58349 -10.48385 -10.40688 -9.55747 -9.20211 -8.15037 -6.32157 -0.17035 0.74837 1.44903 1.46591 1.54361 1.67198 2.12212 2.39281 2.51696 2.85237 3.14348 3.82519 3.89584 4.08431 4.21834 4.33582 4.49587 4.52385 4.60483 4.76073 4.79859 4.83101 4.95275 4.99786 5.10288 5.10838 5.20285 5.31264 5.45450 5.47068 5.58667 5.59599 5.66328 5.82880 5.96913 6.11511 6.19240 6.75595 7.02650 7.34661 7.59993 8.89996 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033294 B = 0.004167 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.780425 B = 6717.340069 C = 7204.807522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.002 0.998 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.265 1.265 13 N -0.704 5.704 14 C 0.529 3.471 15 O -0.574 6.574 16 C -0.196 4.196 17 C 0.034 3.966 18 C -0.096 4.096 19 C -0.024 4.024 20 C -0.178 4.178 21 C -0.221 4.221 22 C -0.031 4.031 23 O -0.181 6.181 24 H 0.029 0.971 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.265 0.735 30 H 0.401 0.599 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 8.054 -16.140 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.590 4.590 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.352 5.352 14 C 0.320 3.680 15 O -0.458 6.458 16 C -0.217 4.217 17 C 0.032 3.968 18 C -0.152 4.152 19 C -0.074 4.074 20 C -0.197 4.197 21 C -0.240 4.240 22 C -0.099 4.099 23 O -0.077 6.077 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.236 0.764 31 H 0.161 0.839 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.179 0.821 36 H 0.196 0.804 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.817 8.057 -15.190 19.800 hybrid contribution 1.175 -0.259 0.107 1.208 sum -8.642 7.798 -15.083 19.052 Atomic orbital electron populations 1.21670 0.96780 0.99070 1.00422 1.21780 0.93959 0.99113 1.01116 1.18353 0.93485 0.89209 0.81428 0.98044 1.21571 0.91645 1.39040 1.06702 0.91335 1.25744 1.03226 0.94366 0.95008 1.70039 1.37058 1.38248 1.09831 0.85453 0.79240 0.78401 0.77560 1.19761 1.21071 1.19020 1.46246 1.15434 1.55932 1.17591 1.17346 0.82351 0.79727 0.88617 1.90788 1.51480 1.61343 1.42184 1.22182 0.98530 1.02408 0.98537 1.19245 0.94125 0.91942 0.91528 1.20886 0.98327 1.02993 0.92994 1.19698 0.96784 0.95808 0.95069 1.22474 0.97849 1.03282 0.96126 1.22095 1.01949 0.99239 1.00680 1.25101 0.93258 1.03000 0.88559 1.84180 1.48058 1.45269 1.30195 0.95227 0.93694 0.93770 0.94386 0.91014 0.92595 0.76444 0.83854 0.90849 0.90060 0.91371 0.82059 0.80420 0.74099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.45 2.24 44.25 0.10 14.55 16 4 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 5 C -0.55 -29.59 8.73 25.60 0.22 -29.36 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.91 5.29 84.66 0.45 1.36 16 8 N -0.91 -52.50 11.29 21.45 0.24 -52.26 16 9 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.70 -29.83 5.01 -455.12 -2.28 -32.11 16 14 C 0.53 21.24 6.07 85.06 0.52 21.76 16 15 O -0.57 -26.19 10.22 -4.61 -0.05 -26.23 16 16 C -0.20 -6.23 9.46 22.48 0.21 -6.02 16 17 C 0.03 1.00 5.77 -19.64 -0.11 0.89 16 18 C -0.10 -2.82 8.31 71.24 0.59 -2.23 16 19 C -0.02 -0.62 6.29 23.03 0.14 -0.48 16 20 C -0.18 -3.73 10.90 22.71 0.25 -3.48 16 21 C -0.22 -3.52 10.87 22.06 0.24 -3.28 16 22 C -0.03 -0.49 12.06 67.11 0.81 0.32 16 23 O -0.18 -4.30 10.67 -6.16 -0.07 -4.36 16 24 H 0.03 1.42 7.84 -2.38 -0.02 1.40 16 25 H 0.04 1.95 5.65 -2.39 -0.01 1.94 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 3.99 5.95 -2.38 -0.01 3.97 16 29 H 0.26 14.46 8.31 -92.70 -0.77 13.68 16 30 H 0.40 14.72 8.50 -92.71 -0.79 13.93 16 31 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 32 H 0.07 1.75 7.97 -2.39 -0.02 1.73 16 33 H 0.08 2.61 7.09 -2.39 -0.02 2.59 16 34 H 0.07 2.27 7.41 -2.39 -0.02 2.25 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.24 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -66.13 310.54 4.36 -61.77 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.29 Total: 25.46 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 4.20 Total: -16.72 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.04 Total: -84.36 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.11 Total: -30.60 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -66.13 4.36 -61.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832214005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.102 kcal (2) G-P(sol) polarization free energy of solvation -66.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds