Wall clock time and date at job start Sun Mar 29 2020 23:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47116 * 2 1 4 4 H 1.09004 * 109.46989 * 54.99984 * 3 2 1 5 5 C 1.50696 * 109.47348 * 174.99914 * 3 2 1 6 6 H 1.08000 * 120.00151 * 119.99868 * 5 3 2 7 7 C 1.37879 * 120.00210 * 299.99952 * 5 3 2 8 8 N 1.31522 * 119.99706 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00171 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47129 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47096 * 120.00304 * 9 7 5 12 12 H 1.48502 * 109.47008 * 239.99789 * 9 7 5 13 13 O 1.45201 * 109.47031 * 294.99963 * 3 2 1 14 14 C 1.34228 * 116.99749 * 89.99831 * 13 3 2 15 15 O 1.20831 * 120.00461 * 359.97438 * 14 13 3 16 16 C 1.50705 * 119.99744 * 180.02562 * 14 13 3 17 17 C 1.50699 * 109.47057 * 179.97438 * 16 14 13 18 18 C 1.38675 * 120.41772 * 89.99771 * 17 16 14 19 19 C 1.38630 * 118.41860 * 179.74920 * 18 17 16 20 20 C 1.38224 * 119.16347 * 0.25530 * 19 18 17 21 21 C 1.50700 * 119.62022 * 179.97438 * 20 19 18 22 22 N 1.31857 * 120.76155 * 0.02562 * 20 19 18 23 23 C 1.31879 * 121.72569 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47526 * 299.99833 * 1 2 3 25 25 H 1.09000 * 109.47233 * 60.00129 * 1 2 3 26 26 H 1.09000 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47040 * 239.99966 * 2 1 3 28 28 H 1.09000 * 109.47233 * 119.99871 * 2 1 3 29 29 H 0.96999 * 119.99823 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46962 * 60.00286 * 16 14 13 31 31 H 1.08994 * 109.47093 * 299.99793 * 16 14 13 32 32 H 1.08002 * 120.79244 * 0.03059 * 18 17 16 33 33 H 1.07997 * 120.41760 * 180.23193 * 19 18 17 34 34 H 1.09007 * 109.46662 * 89.99795 * 21 20 19 35 35 H 1.08999 * 109.47158 * 209.99996 * 21 20 19 36 36 H 1.08991 * 109.47069 * 330.00334 * 21 20 19 37 37 H 1.08008 * 119.61493 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0049 0.8802 1.3812 10 1 6.5987 1.5443 0.1931 11 1 6.3999 1.6159 2.6092 12 1 6.4961 -0.5189 1.4628 13 8 1.6558 2.0917 -1.2407 14 6 0.4727 2.7254 -1.2559 15 8 -0.2194 2.7369 -0.2655 16 6 0.0069 3.4215 -2.5088 17 6 -1.3413 4.0487 -2.2633 18 6 -1.4351 5.3480 -1.7879 19 6 -2.6962 5.8857 -1.5818 20 6 -3.8101 5.1125 -1.8500 21 6 -5.1859 5.6865 -1.6291 22 7 -3.6828 3.8782 -2.2960 23 6 -2.4995 3.3344 -2.5035 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0611 2.9499 30 1 -0.0721 2.6968 -3.3191 31 1 0.7237 4.1957 -2.7821 32 1 -0.5470 5.9288 -1.5873 33 1 -2.8068 6.8957 -1.2159 34 1 -5.5271 6.1740 -2.5425 35 1 -5.8759 4.8849 -1.3655 36 1 -5.1497 6.4156 -0.8199 37 1 -2.4349 2.3204 -2.8700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835340449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:13 Heat of formation + Delta-G solvation = -70.438803 kcal Electronic energy + Delta-G solvation = -19544.918448 eV Core-core repulsion = 16479.783270 eV Total energy + Delta-G solvation = -3065.135178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44600 -39.39632 -35.94960 -33.98260 -33.49872 -32.28507 -31.39249 -30.00922 -27.38326 -26.10751 -23.60463 -23.20948 -21.94390 -20.59971 -19.41328 -17.04880 -16.79551 -16.61348 -16.20613 -15.36198 -15.29901 -14.98576 -14.50589 -14.23407 -13.28906 -13.20128 -12.97608 -12.82743 -12.65476 -12.41464 -12.24641 -11.83769 -11.54064 -11.43334 -11.32118 -11.14684 -10.97803 -10.65884 -10.28879 -9.84597 -9.78726 -9.60529 -9.43600 -9.37213 -8.81418 -8.75856 -8.47090 -6.20083 -4.27313 1.07405 1.31982 2.99754 3.21966 3.28867 3.33352 3.54228 3.98377 4.27505 4.34315 4.69070 4.70468 4.92083 5.00479 5.11853 5.26946 5.43466 5.45115 5.50978 5.61142 5.77214 5.77667 5.95135 6.11618 6.22708 6.28113 6.29066 6.45659 6.71836 6.86249 6.96525 7.16252 7.25792 7.60717 7.72855 7.94599 8.00333 8.14806 8.62865 8.88223 9.38134 10.86645 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037692 B = 0.004193 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.683357 B = 6676.033499 C = 6910.155643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.356 6.356 14 C 0.451 3.549 15 O -0.510 6.510 16 C -0.075 4.075 17 C -0.122 4.122 18 C -0.056 4.056 19 C -0.172 4.172 20 C 0.120 3.880 21 C -0.102 4.102 22 N -0.485 5.485 23 C 0.120 3.880 24 H 0.052 0.948 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.266 0.734 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.397 8.744 -8.972 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.273 6.273 14 C 0.293 3.707 15 O -0.400 6.400 16 C -0.113 4.113 17 C -0.124 4.124 18 C -0.082 4.082 19 C -0.192 4.192 20 C -0.018 4.018 21 C -0.159 4.159 22 N -0.195 5.195 23 C -0.037 4.037 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.305 8.134 -8.631 16.385 hybrid contribution 1.767 0.337 0.518 1.872 sum -9.538 8.472 -8.113 15.118 Atomic orbital electron populations 1.21847 0.98331 0.98985 1.00719 1.22019 0.92639 0.99364 1.03361 1.20677 0.94986 0.88773 0.78653 0.93575 1.21087 0.89705 1.38918 1.06228 0.91287 1.24897 0.99252 0.94768 0.95082 1.69905 1.35300 1.37846 1.09471 0.86234 0.83895 0.77903 0.78200 1.19477 1.20770 1.20702 1.86469 1.34140 1.62476 1.44184 1.23062 0.80998 0.77282 0.89312 1.90639 1.55387 1.58159 1.35791 1.20220 0.94014 1.01039 0.96074 1.20352 0.95519 0.95166 1.01356 1.21466 0.98045 0.94580 0.94117 1.21882 0.92823 1.01390 1.03097 1.21274 0.96031 0.90043 0.94407 1.20685 0.92050 1.00972 1.02202 1.67510 1.27238 1.11918 1.12805 1.22567 0.86834 0.99161 0.95109 0.92907 0.94972 0.94820 0.93955 0.87364 0.92439 0.87096 0.87149 0.84790 0.84912 0.90628 0.90550 0.90837 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.56 37.16 0.32 -2.80 16 2 C -0.14 -3.37 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.83 2.25 -27.88 -0.06 5.77 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.46 8.90 -34.44 -0.31 -14.77 16 6 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 7 C 0.06 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.37 16 9 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 O -0.36 -8.22 9.81 -39.25 -0.38 -8.61 16 14 C 0.45 8.98 6.41 36.01 0.23 9.21 16 15 O -0.51 -11.62 13.18 -18.75 -0.25 -11.87 16 16 C -0.08 -1.04 5.97 -29.03 -0.17 -1.21 16 17 C -0.12 -1.71 4.39 -104.48 -0.46 -2.17 16 18 C -0.06 -0.73 9.86 -39.27 -0.39 -1.11 16 19 C -0.17 -2.04 9.74 -39.44 -0.38 -2.42 16 20 C 0.12 1.53 6.78 -82.59 -0.56 0.97 16 21 C -0.10 -0.92 10.17 36.01 0.37 -0.56 16 22 N -0.49 -7.14 10.27 -9.47 -0.10 -7.24 16 23 C 0.12 1.73 10.86 -17.55 -0.19 1.53 16 24 H 0.05 1.23 7.80 -51.93 -0.40 0.83 16 25 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.11 1.27 8.10 -51.93 -0.42 0.84 16 31 H 0.11 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.53 8.08 -51.93 -0.42 0.12 16 37 H 0.15 1.93 8.06 -52.48 -0.42 1.50 16 LS Contribution 314.17 15.07 4.73 4.73 Total: -1.00 -31.85 314.17 -7.40 -39.26 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.16 Total: 1.71 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.85 Total: -9.48 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.53 Total: -31.61 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.63 Total: -20.47 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.85 -7.40 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835340449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.183 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds