Wall clock time and date at job start Sun Mar 29 2020 23:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 O 1.45194 * 109.47550 * 64.99895 * 3 2 1 6 6 C 1.34227 * 117.00195 * 270.00175 * 5 3 2 7 7 O 1.20824 * 120.00013 * 359.97438 * 6 5 3 8 8 C 1.50698 * 120.00334 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.47360 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47158 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00294 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99993 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00153 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00086 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47093 * 89.99465 * 14 12 10 16 16 H 1.48497 * 109.47237 * 209.99769 * 14 12 10 17 17 H 1.48505 * 109.46935 * 329.99895 * 14 12 10 18 18 C 1.50703 * 109.46801 * 184.99876 * 3 2 1 19 19 C 1.38650 * 120.79330 * 279.71742 * 18 3 2 20 20 C 1.38201 * 119.16022 * 179.75765 * 19 18 3 21 21 N 1.31861 * 120.76687 * 0.53110 * 20 19 18 22 22 C 1.31866 * 121.72647 * 359.73972 * 21 20 19 23 23 C 1.38205 * 120.76809 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47203 * 300.00119 * 8 6 5 30 30 H 1.09002 * 109.47085 * 59.99308 * 8 6 5 31 31 H 1.09005 * 109.46619 * 299.99831 * 9 8 6 32 32 H 1.08993 * 109.47115 * 59.99710 * 9 8 6 33 33 H 0.96997 * 120.00476 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.41238 * 0.02562 * 19 18 3 35 35 H 1.08010 * 119.61380 * 180.25181 * 20 19 18 36 36 H 1.08000 * 119.61713 * 180.02562 * 22 21 20 37 37 H 1.07993 * 120.42337 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6559 2.0917 1.2406 6 6 0.4727 2.7255 1.2559 7 8 -0.2189 2.7378 0.2652 8 6 0.0069 3.4218 2.5086 9 6 -1.3617 4.0585 2.2593 10 6 -1.8272 4.7553 3.5119 11 1 -1.2089 4.7447 4.3973 12 6 -3.0429 5.4055 3.5278 13 7 -3.7961 5.4180 2.4498 14 14 -3.6202 6.2686 5.0806 15 1 -3.1480 7.6765 5.0691 16 1 -5.1039 6.2445 5.1379 17 1 -3.0676 5.5709 6.2694 18 6 3.5419 1.4442 -0.1238 19 6 4.3455 1.2100 0.9815 20 6 5.7190 1.2144 0.8286 21 7 6.2659 1.4480 -0.3483 22 6 5.5331 1.6800 -1.4198 23 6 4.1531 1.6857 -1.3448 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 -0.0720 2.6972 3.3191 30 1 0.7240 4.1959 2.7820 31 1 -1.2831 4.7831 1.4488 32 1 -2.0784 3.2841 1.9862 33 1 -4.6513 5.8757 2.4609 34 1 3.9035 1.0222 1.9489 35 1 6.3519 1.0287 1.6839 36 1 6.0168 1.8669 -2.3671 37 1 3.5583 1.8768 -2.2257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839009149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:14 Heat of formation + Delta-G solvation = -72.066953 kcal Electronic energy + Delta-G solvation = -19265.006823 eV Core-core repulsion = 16199.801043 eV Total energy + Delta-G solvation = -3065.205780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.74410 -39.85503 -36.68788 -34.19340 -33.60010 -32.15326 -31.39703 -31.12364 -27.27183 -25.82933 -23.72639 -22.85185 -22.53177 -20.89861 -19.81093 -17.60645 -17.32345 -16.44649 -16.18869 -15.95639 -15.76307 -15.09022 -14.51052 -14.18395 -14.04490 -13.81277 -13.81130 -13.25732 -12.57795 -12.30737 -12.28952 -12.00555 -11.75443 -11.51526 -11.24196 -10.99190 -10.90627 -10.67000 -10.45500 -10.09222 -9.92274 -9.83154 -9.60981 -9.56202 -9.33946 -9.20934 -8.40595 -6.04445 -4.09457 0.93124 0.98697 2.76377 2.97919 3.29727 3.36187 3.38943 3.62657 4.25552 4.29337 4.42046 4.61908 4.76832 4.93979 4.95466 5.01141 5.08805 5.31154 5.39922 5.44996 5.52599 5.63802 5.70553 5.77345 5.89840 6.02459 6.06809 6.09986 6.21129 6.38091 6.48684 6.61767 6.88962 7.62847 7.69360 7.75996 7.94518 8.21029 8.36522 8.97526 9.54875 11.06489 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031478 B = 0.003803 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.287064 B = 7360.362698 C = 7794.404524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.123 3.877 4 H 0.096 0.904 5 O -0.357 6.357 6 C 0.457 3.543 7 O -0.499 6.499 8 C -0.103 4.103 9 C 0.034 3.966 10 C -0.529 4.529 11 H 0.058 0.942 12 C 0.059 3.941 13 N -0.889 5.889 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.040 4.040 19 C -0.145 4.145 20 C 0.095 3.905 21 N -0.487 5.487 22 C 0.096 3.904 23 C -0.162 4.162 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.142 0.858 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.729 -10.615 -5.443 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.068 3.932 4 H 0.114 0.886 5 O -0.275 6.275 6 C 0.301 3.699 7 O -0.385 6.385 8 C -0.141 4.141 9 C -0.003 4.003 10 C -0.568 4.568 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.048 4.048 19 C -0.165 4.165 20 C -0.061 4.061 21 N -0.196 5.196 22 C -0.060 4.060 23 C -0.182 4.182 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 16.258 -10.562 -5.915 20.270 hybrid contribution -1.374 0.507 0.724 1.634 sum 14.883 -10.056 -5.191 18.697 Atomic orbital electron populations 1.21848 0.94011 1.01573 1.03504 1.21920 0.97529 0.94299 1.03040 1.21432 0.89615 0.94304 0.87846 0.88589 1.86623 1.39043 1.64236 1.37607 1.24750 0.77865 0.75293 0.92028 1.90634 1.54433 1.57315 1.36075 1.21783 1.01986 0.99320 0.91010 1.19011 0.87725 0.96018 0.97550 1.21150 1.03780 1.34081 0.97741 0.92332 1.25013 0.96624 0.96307 0.96325 1.69986 1.11979 1.42930 1.27856 0.86548 0.77869 0.79969 0.83333 1.20588 1.21170 1.19773 1.20133 0.94672 0.96116 0.93914 1.22088 0.94653 0.99785 0.99928 1.22805 0.92754 0.95377 0.95196 1.67660 1.41178 1.11252 0.99484 1.22713 0.90456 0.95583 0.97288 1.22024 0.96512 1.01545 0.98110 0.92607 0.92288 0.91649 0.90485 0.90867 0.88987 0.89015 0.95614 0.95551 0.92829 0.84033 0.82547 0.82578 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.57 37.16 0.32 -1.73 16 2 C -0.13 -1.51 5.63 -26.73 -0.15 -1.66 16 3 C 0.12 1.63 2.49 -27.88 -0.07 1.56 16 4 H 0.10 1.36 7.06 -51.93 -0.37 0.99 16 5 O -0.36 -5.59 9.23 -39.25 -0.36 -5.96 16 6 C 0.46 8.57 6.41 36.00 0.23 8.80 16 7 O -0.50 -10.56 13.13 -18.75 -0.25 -10.81 16 8 C -0.10 -2.06 5.75 -27.88 -0.16 -2.22 16 9 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 10 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 14 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C -0.04 -0.47 5.01 -104.31 -0.52 -0.99 16 19 C -0.14 -1.58 9.46 -39.44 -0.37 -1.95 16 20 C 0.10 0.98 11.18 -17.55 -0.20 0.79 16 21 N -0.49 -5.58 10.36 -13.25 -0.14 -5.72 16 22 C 0.10 0.96 11.18 -17.55 -0.20 0.76 16 23 C -0.16 -1.65 9.78 -39.44 -0.39 -2.03 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.94 6.06 -51.93 -0.31 0.63 16 26 H 0.06 0.94 7.80 -51.93 -0.40 0.54 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 31 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 32 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.14 1.42 7.85 -52.48 -0.41 1.01 16 35 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 36 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -31.98 317.05 -7.55 -39.53 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.26 Total: -0.83 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -2.03 Total: -11.25 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.60 Total: -31.70 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.61 Total: -16.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.98 -7.55 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839009149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.535 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds