Wall clock time and date at job start Sun Mar 29 2020 23:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 O 1.45194 * 109.47550 * 64.99895 * 3 2 1 6 6 C 1.34227 * 117.00195 * 270.00175 * 5 3 2 7 7 O 1.20824 * 120.00013 * 359.97438 * 6 5 3 8 8 C 1.50698 * 120.00334 * 179.97438 * 6 5 3 9 9 C 1.52998 * 109.47360 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47158 * 180.02562 * 9 8 6 11 11 H 1.08003 * 120.00294 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99993 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00153 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00086 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47093 * 89.99465 * 14 12 10 16 16 H 1.48497 * 109.47237 * 209.99769 * 14 12 10 17 17 H 1.48505 * 109.46935 * 329.99895 * 14 12 10 18 18 C 1.50703 * 109.46801 * 184.99876 * 3 2 1 19 19 C 1.38650 * 120.79330 * 279.71742 * 18 3 2 20 20 C 1.38201 * 119.16022 * 179.75765 * 19 18 3 21 21 N 1.31861 * 120.76687 * 0.53110 * 20 19 18 22 22 C 1.31866 * 121.72647 * 359.73972 * 21 20 19 23 23 C 1.38205 * 120.76809 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09001 * 109.47203 * 300.00119 * 8 6 5 30 30 H 1.09002 * 109.47085 * 59.99308 * 8 6 5 31 31 H 1.09005 * 109.46619 * 299.99831 * 9 8 6 32 32 H 1.08993 * 109.47115 * 59.99710 * 9 8 6 33 33 H 0.96997 * 120.00476 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.41238 * 0.02562 * 19 18 3 35 35 H 1.08010 * 119.61380 * 180.25181 * 20 19 18 36 36 H 1.08000 * 119.61713 * 180.02562 * 22 21 20 37 37 H 1.07993 * 120.42337 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6559 2.0917 1.2406 6 6 0.4727 2.7255 1.2559 7 8 -0.2189 2.7378 0.2652 8 6 0.0069 3.4218 2.5086 9 6 -1.3617 4.0585 2.2593 10 6 -1.8272 4.7553 3.5119 11 1 -1.2089 4.7447 4.3973 12 6 -3.0429 5.4055 3.5278 13 7 -3.7961 5.4180 2.4498 14 14 -3.6202 6.2686 5.0806 15 1 -3.1480 7.6765 5.0691 16 1 -5.1039 6.2445 5.1379 17 1 -3.0676 5.5709 6.2694 18 6 3.5419 1.4442 -0.1238 19 6 4.3455 1.2100 0.9815 20 6 5.7190 1.2144 0.8286 21 7 6.2659 1.4480 -0.3483 22 6 5.5331 1.6800 -1.4198 23 6 4.1531 1.6857 -1.3448 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 -0.0720 2.6972 3.3191 30 1 0.7240 4.1959 2.7820 31 1 -1.2831 4.7831 1.4488 32 1 -2.0784 3.2841 1.9862 33 1 -4.6513 5.8757 2.4609 34 1 3.9035 1.0222 1.9489 35 1 6.3519 1.0287 1.6839 36 1 6.0168 1.8669 -2.3671 37 1 3.5583 1.8768 -2.2257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839009149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:14 Heat of formation + Delta-G solvation = -90.133665 kcal Electronic energy + Delta-G solvation = -19265.790255 eV Core-core repulsion = 16199.801043 eV Total energy + Delta-G solvation = -3065.989212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.91932 -40.90945 -38.03639 -35.65393 -35.28321 -33.15131 -32.99791 -32.16374 -28.61065 -27.51093 -24.62252 -24.20600 -23.74729 -22.13087 -21.29892 -19.17073 -18.44857 -18.02920 -17.57546 -16.99237 -16.65532 -16.48547 -16.29833 -15.43407 -15.08840 -14.87510 -14.58996 -14.51591 -14.25231 -14.01410 -13.58814 -13.30645 -13.06325 -12.84124 -12.68219 -12.51450 -12.45771 -12.01552 -11.96203 -11.75513 -11.64422 -11.36897 -11.23042 -10.65846 -10.58055 -10.44796 -10.10457 -8.20466 -6.34089 0.11169 0.18762 1.26082 1.43038 1.45118 1.55945 1.68913 2.42685 2.82405 3.13511 3.30062 3.59276 3.71598 3.78578 3.90806 4.06464 4.17105 4.18211 4.30515 4.42552 4.43619 4.47663 4.66802 4.72347 4.84644 4.89354 4.90167 4.94843 5.03228 5.24943 5.27966 5.44926 5.50132 5.55310 5.72670 5.80252 6.13064 6.79720 6.87041 6.98756 7.36243 8.91994 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031478 B = 0.003803 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.287064 B = 7360.362698 C = 7794.404524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.121 3.879 4 H 0.083 0.917 5 O -0.348 6.348 6 C 0.466 3.534 7 O -0.530 6.530 8 C -0.095 4.095 9 C 0.041 3.959 10 C -0.545 4.545 11 H 0.076 0.924 12 C -0.003 4.003 13 N -0.935 5.935 14 Si 0.972 3.028 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.256 1.256 18 C -0.054 4.054 19 C -0.151 4.151 20 C 0.093 3.907 21 N -0.506 5.506 22 C 0.094 3.906 23 C -0.164 4.164 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.048 0.952 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.111 0.889 31 H -0.011 1.011 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.181 0.819 36 H 0.184 0.816 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.523 -11.132 -4.309 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.066 3.934 4 H 0.101 0.899 5 O -0.265 6.265 6 C 0.311 3.689 7 O -0.419 6.419 8 C -0.133 4.133 9 C 0.004 3.996 10 C -0.583 4.583 11 H 0.094 0.906 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.796 3.204 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.180 1.180 18 C -0.063 4.063 19 C -0.171 4.171 20 C -0.063 4.063 21 N -0.216 5.216 22 C -0.062 4.062 23 C -0.183 4.183 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.008 0.992 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.166 0.834 35 H 0.198 0.802 36 H 0.201 0.799 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 18.092 -11.096 -4.769 21.753 hybrid contribution -1.865 0.619 0.290 1.987 sum 16.226 -10.478 -4.479 19.828 Atomic orbital electron populations 1.21811 0.95620 1.02132 1.01210 1.21916 0.95878 0.93492 1.04779 1.21646 0.90958 0.94777 0.85995 0.89898 1.86564 1.37109 1.63744 1.39107 1.24352 0.78413 0.75073 0.91067 1.90631 1.55596 1.58611 1.37063 1.21511 0.99098 1.00341 0.92309 1.18771 0.90466 0.94384 0.96023 1.21643 1.04179 1.33791 0.98653 0.90593 1.26068 0.96879 0.97165 0.99936 1.70149 1.12548 1.44195 1.30553 0.85342 0.77126 0.78815 0.79117 1.19780 1.21143 1.17982 1.20094 0.93455 0.97660 0.95060 1.22206 0.94995 0.99905 0.99964 1.23193 0.92835 0.94605 0.95710 1.67721 1.41855 1.11840 1.00183 1.23171 0.90401 0.94617 0.98032 1.22236 0.96931 1.00964 0.98206 0.90583 0.95234 0.93280 0.88033 0.89709 0.86796 0.87046 0.99235 0.98985 0.92759 0.83420 0.80183 0.79949 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 8.57 71.98 0.62 -3.43 16 2 C -0.12 -2.68 5.63 30.59 0.17 -2.51 16 3 C 0.12 3.09 2.49 29.85 0.07 3.17 16 4 H 0.08 2.36 7.06 -2.39 -0.02 2.34 16 5 O -0.35 -10.66 9.23 -51.39 -0.47 -11.14 16 6 C 0.47 17.68 6.41 71.24 0.46 18.14 16 7 O -0.53 -23.38 13.13 21.97 0.29 -23.10 16 8 C -0.10 -3.78 5.75 29.85 0.17 -3.61 16 9 C 0.04 2.18 4.26 29.85 0.13 2.31 16 10 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16 11 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 12 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 13 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 14 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 C -0.05 -1.18 5.01 -19.66 -0.10 -1.28 16 19 C -0.15 -3.00 9.46 22.36 0.21 -2.79 16 20 C 0.09 1.71 11.18 84.68 0.95 2.66 16 21 N -0.51 -10.53 10.36 -195.85 -2.03 -12.56 16 22 C 0.09 1.66 11.18 84.68 0.95 2.61 16 23 C -0.16 -3.02 9.78 22.36 0.22 -2.80 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.03 0.95 6.06 -2.39 -0.01 0.93 16 26 H 0.05 1.45 7.80 -2.39 -0.02 1.43 16 27 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 30 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 31 H -0.01 -0.65 8.10 -2.38 -0.02 -0.67 16 32 H -0.01 -0.49 8.10 -2.39 -0.02 -0.51 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.15 2.67 7.85 -2.91 -0.02 2.64 16 35 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -70.56 317.05 5.69 -64.88 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.05 Total: 11.06 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: 4.54 Total: -17.18 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -1.74 Total: -69.97 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.19 Total: -34.23 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -70.56 5.69 -64.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839009149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.254 kcal (2) G-P(sol) polarization free energy of solvation -70.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds