Wall clock time and date at job start Sun Mar 29 2020 23:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46639 * 2 1 4 4 H 1.09001 * 109.47367 * 305.57940 * 3 2 1 5 5 C 1.50711 * 109.46757 * 185.58655 * 3 2 1 6 6 H 1.08002 * 119.99859 * 274.99159 * 5 3 2 7 7 C 1.37874 * 119.99768 * 94.99240 * 5 3 2 8 8 N 1.31516 * 119.99765 * 184.84062 * 7 5 3 9 9 Si 1.86791 * 120.00389 * 4.84203 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86566 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86662 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86539 * 9 7 5 13 13 O 1.45197 * 109.47386 * 65.58743 * 3 2 1 14 14 C 1.34680 * 116.99767 * 269.99343 * 13 3 2 15 15 O 1.21429 * 119.99854 * 0.02562 * 14 13 3 16 16 C 1.48071 * 119.99887 * 180.02562 * 14 13 3 17 17 C 1.39346 * 119.72733 * 179.73009 * 16 14 13 18 18 C 1.38587 * 119.05653 * 179.76982 * 17 16 14 19 19 C 1.38622 * 118.48897 * 0.49607 * 18 17 16 20 20 C 1.50704 * 120.31953 * 179.72263 * 19 18 17 21 21 C 1.38586 * 119.35949 * 359.74692 * 19 18 17 22 22 C 1.50691 * 119.54537 * 180.02562 * 21 19 18 23 23 N 1.31500 * 120.90658 * 359.97438 * 21 19 18 24 24 H 1.08994 * 109.47026 * 60.00023 * 1 2 3 25 25 H 1.08999 * 109.47013 * 300.00364 * 1 2 3 26 26 H 1.08998 * 109.46586 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46818 * 119.99504 * 2 1 3 28 28 H 1.08999 * 109.47460 * 239.99928 * 2 1 3 29 29 H 0.96999 * 120.00264 * 180.02562 * 8 7 5 30 30 H 1.08004 * 120.46957 * 359.97438 * 17 16 14 31 31 H 1.08000 * 120.75706 * 180.23822 * 18 17 16 32 32 H 1.09003 * 109.47125 * 270.02273 * 20 19 18 33 33 H 1.09001 * 109.47145 * 30.02125 * 20 19 18 34 34 H 1.09002 * 109.46905 * 150.02091 * 20 19 18 35 35 H 1.09003 * 109.47253 * 269.97746 * 22 21 19 36 36 H 1.08998 * 109.47698 * 29.97307 * 22 21 19 37 37 H 1.08998 * 109.47158 * 149.97558 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5407 1.4448 -0.1383 6 1 4.1638 1.3341 0.7368 7 6 4.1181 1.5883 -1.3821 8 7 5.4231 1.4951 -1.5159 9 14 3.0469 1.9151 -2.8771 10 1 2.7809 3.3720 -2.9866 11 1 3.7473 1.4465 -4.0999 12 1 1.7609 1.1866 -2.7333 13 8 1.6678 2.0875 1.2465 14 6 0.4809 2.7233 1.2754 15 8 -0.2240 2.7383 0.2868 16 6 0.0356 3.4041 2.5126 17 6 -1.1909 4.0651 2.5344 18 6 -1.5961 4.6935 3.7013 19 6 -0.7559 4.6481 4.8029 20 6 -1.1527 5.3229 6.0907 21 6 0.4528 3.9767 4.7083 22 6 1.3691 3.9243 5.9035 23 7 0.8105 3.3840 3.5904 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 5.8294 1.5964 -2.3909 30 1 -1.8183 4.0845 1.6555 31 1 -2.5431 5.2105 3.7499 32 1 -0.7919 6.3514 6.0882 33 1 -2.2388 5.3191 6.1832 34 1 -0.7145 4.7861 6.9321 35 1 2.0470 4.7775 5.8793 36 1 0.7764 3.9571 6.8176 37 1 1.9468 3.0003 5.8781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842342649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:00 Heat of formation + Delta-G solvation = -63.784830 kcal Electronic energy + Delta-G solvation = -19754.413364 eV Core-core repulsion = 16689.566724 eV Total energy + Delta-G solvation = -3064.846640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65032 -39.29716 -35.96283 -34.07587 -33.27341 -33.04898 -31.93717 -28.60934 -28.00243 -27.34533 -23.69216 -22.86836 -22.32895 -20.76789 -19.66963 -18.02031 -16.86858 -16.42883 -16.05924 -15.56788 -15.17904 -14.79677 -14.42032 -13.95895 -13.39383 -13.33263 -13.09261 -12.92079 -12.79697 -12.54170 -12.23102 -12.08918 -12.06524 -11.71462 -11.50272 -11.32270 -10.96261 -10.76306 -10.26127 -10.02796 -9.84667 -9.82362 -9.42539 -9.31423 -9.02281 -8.86405 -8.66553 -6.23979 -4.27250 0.62275 1.18888 2.85671 3.21570 3.31108 3.36735 3.37317 3.90888 4.22564 4.29316 4.51958 4.69474 4.70074 4.99276 5.10592 5.23854 5.30945 5.44936 5.49083 5.52697 5.57959 5.72000 5.93120 5.94214 5.96512 6.02987 6.09388 6.15053 6.44292 6.56524 6.65072 6.82011 6.84503 7.18958 7.35325 7.53721 7.85657 8.27257 8.65553 8.88850 9.35284 10.87422 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.005265 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.842953 B = 5316.841889 C = 5676.659140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.184 3.816 4 H 0.048 0.952 5 C -0.516 4.516 6 H 0.087 0.913 7 C 0.083 3.917 8 N -0.882 5.882 9 Si 0.867 3.133 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.259 1.259 13 O -0.319 6.319 14 C 0.508 3.492 15 O -0.514 6.514 16 C 0.102 3.898 17 C -0.116 4.116 18 C -0.086 4.086 19 C -0.120 4.120 20 C -0.114 4.114 21 C 0.121 3.879 22 C -0.107 4.107 23 N -0.425 5.425 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.270 0.730 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 6.337 13.341 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.131 3.869 4 H 0.065 0.935 5 C -0.553 4.553 6 H 0.105 0.895 7 C -0.121 4.121 8 N -0.518 5.518 9 Si 0.693 3.307 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.183 1.183 13 O -0.233 6.233 14 C 0.351 3.649 15 O -0.404 6.404 16 C -0.035 4.035 17 C -0.136 4.136 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.171 4.171 21 C -0.020 4.020 22 C -0.164 4.164 23 N -0.137 5.137 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.104 5.843 12.796 19.225 hybrid contribution -1.296 0.635 -1.073 1.798 sum -14.400 6.478 11.723 19.666 Atomic orbital electron populations 1.21932 0.97573 0.99827 1.01462 1.22098 0.93534 0.98837 1.02444 1.21134 0.96282 0.88935 0.80520 0.93453 1.20805 0.87797 1.50945 0.95754 0.89523 1.24897 0.94957 0.93752 0.98543 1.69856 1.09489 1.47874 1.24611 0.86989 0.81331 0.79870 0.82500 1.19616 1.20716 1.18307 1.86851 1.32523 1.61193 1.42748 1.20744 0.81378 0.76720 0.86052 1.90768 1.55466 1.59232 1.34968 1.20456 0.92222 0.98589 0.92205 1.22100 0.96059 0.95934 0.99538 1.21422 0.99801 0.98109 0.91787 1.20989 0.95246 0.98801 0.97136 1.20856 1.02023 1.00448 0.93746 1.21280 0.93220 0.93595 0.93905 1.20801 0.98262 1.04324 0.92995 1.67601 1.32329 1.15364 0.98382 0.92725 0.93991 0.94000 0.91815 0.90951 0.92014 0.83346 0.84096 0.90515 0.91231 0.90502 0.90114 0.90423 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.57 37.16 0.32 -2.72 16 2 C -0.13 -3.00 5.63 -26.73 -0.15 -3.15 16 3 C 0.18 4.78 1.91 -27.88 -0.05 4.73 16 4 H 0.05 1.27 4.31 -51.93 -0.22 1.05 16 5 C -0.52 -15.08 9.25 -34.44 -0.32 -15.39 16 6 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 7 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 8 N -0.88 -26.66 13.96 55.43 0.77 -25.89 16 9 Si 0.87 21.76 26.99 -169.99 -4.59 17.18 16 10 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -6.30 6.82 56.52 0.39 -5.91 16 13 O -0.32 -7.98 9.63 -40.44 -0.39 -8.37 16 14 C 0.51 11.24 6.43 34.76 0.22 11.46 16 15 O -0.51 -11.69 13.51 -19.21 -0.26 -11.95 16 16 C 0.10 1.88 6.75 -83.02 -0.56 1.32 16 17 C -0.12 -1.67 9.63 -39.04 -0.38 -2.05 16 18 C -0.09 -0.94 9.85 -39.31 -0.39 -1.33 16 19 C -0.12 -1.30 5.91 -104.35 -0.62 -1.92 16 20 C -0.11 -0.76 9.62 36.01 0.35 -0.41 16 21 C 0.12 1.64 6.78 -82.61 -0.56 1.08 16 22 C -0.11 -1.08 9.77 36.00 0.35 -0.73 16 23 N -0.43 -7.65 10.03 -6.07 -0.06 -7.71 16 24 H 0.05 1.13 7.82 -51.93 -0.41 0.73 16 25 H 0.04 0.85 6.04 -51.93 -0.31 0.53 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 29 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.15 1.98 7.64 -52.48 -0.40 1.58 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 34 H 0.08 0.43 5.95 -51.93 -0.31 0.12 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 309.77 15.07 4.67 4.67 Total: -1.00 -33.23 309.77 -6.65 -39.88 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.92 Total: -1.00 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.88 Total: -6.80 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.71 Total: -33.60 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.65 Total: -20.32 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.18 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.23 -6.65 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.909 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds