Wall clock time and date at job start Sun Mar 29 2020 23:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46639 * 2 1 4 4 H 1.09001 * 109.47367 * 305.57940 * 3 2 1 5 5 C 1.50711 * 109.46757 * 185.58655 * 3 2 1 6 6 H 1.08002 * 119.99859 * 274.99159 * 5 3 2 7 7 C 1.37874 * 119.99768 * 94.99240 * 5 3 2 8 8 N 1.31516 * 119.99765 * 184.84062 * 7 5 3 9 9 Si 1.86791 * 120.00389 * 4.84203 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86566 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86662 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86539 * 9 7 5 13 13 O 1.45197 * 109.47386 * 65.58743 * 3 2 1 14 14 C 1.34680 * 116.99767 * 269.99343 * 13 3 2 15 15 O 1.21429 * 119.99854 * 0.02562 * 14 13 3 16 16 C 1.48071 * 119.99887 * 180.02562 * 14 13 3 17 17 C 1.39346 * 119.72733 * 179.73009 * 16 14 13 18 18 C 1.38587 * 119.05653 * 179.76982 * 17 16 14 19 19 C 1.38622 * 118.48897 * 0.49607 * 18 17 16 20 20 C 1.50704 * 120.31953 * 179.72263 * 19 18 17 21 21 C 1.38586 * 119.35949 * 359.74692 * 19 18 17 22 22 C 1.50691 * 119.54537 * 180.02562 * 21 19 18 23 23 N 1.31500 * 120.90658 * 359.97438 * 21 19 18 24 24 H 1.08994 * 109.47026 * 60.00023 * 1 2 3 25 25 H 1.08999 * 109.47013 * 300.00364 * 1 2 3 26 26 H 1.08998 * 109.46586 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46818 * 119.99504 * 2 1 3 28 28 H 1.08999 * 109.47460 * 239.99928 * 2 1 3 29 29 H 0.96999 * 120.00264 * 180.02562 * 8 7 5 30 30 H 1.08004 * 120.46957 * 359.97438 * 17 16 14 31 31 H 1.08000 * 120.75706 * 180.23822 * 18 17 16 32 32 H 1.09003 * 109.47125 * 270.02273 * 20 19 18 33 33 H 1.09001 * 109.47145 * 30.02125 * 20 19 18 34 34 H 1.09002 * 109.46905 * 150.02091 * 20 19 18 35 35 H 1.09003 * 109.47253 * 269.97746 * 22 21 19 36 36 H 1.08998 * 109.47698 * 29.97307 * 22 21 19 37 37 H 1.08998 * 109.47158 * 149.97558 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5407 1.4448 -0.1383 6 1 4.1638 1.3341 0.7368 7 6 4.1181 1.5883 -1.3821 8 7 5.4231 1.4951 -1.5159 9 14 3.0469 1.9151 -2.8771 10 1 2.7809 3.3720 -2.9866 11 1 3.7473 1.4465 -4.0999 12 1 1.7609 1.1866 -2.7333 13 8 1.6678 2.0875 1.2465 14 6 0.4809 2.7233 1.2754 15 8 -0.2240 2.7383 0.2868 16 6 0.0356 3.4041 2.5126 17 6 -1.1909 4.0651 2.5344 18 6 -1.5961 4.6935 3.7013 19 6 -0.7559 4.6481 4.8029 20 6 -1.1527 5.3229 6.0907 21 6 0.4528 3.9767 4.7083 22 6 1.3691 3.9243 5.9035 23 7 0.8105 3.3840 3.5904 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 5.8294 1.5964 -2.3909 30 1 -1.8183 4.0845 1.6555 31 1 -2.5431 5.2105 3.7499 32 1 -0.7919 6.3514 6.0882 33 1 -2.2388 5.3191 6.1832 34 1 -0.7145 4.7861 6.9321 35 1 2.0470 4.7775 5.8793 36 1 0.7764 3.9571 6.8176 37 1 1.9468 3.0003 5.8781 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842342649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:00 Heat of formation + Delta-G solvation = -85.143764 kcal Electronic energy + Delta-G solvation = -19755.339557 eV Core-core repulsion = 16689.566724 eV Total energy + Delta-G solvation = -3065.772833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.92818 -40.84639 -37.77505 -35.45722 -34.91674 -34.07192 -33.93050 -29.98345 -29.30529 -28.57550 -25.25785 -24.37416 -23.47502 -22.20202 -21.45331 -19.77397 -18.74129 -18.02518 -17.49568 -17.19097 -16.48274 -16.04030 -15.76867 -15.26319 -14.97027 -14.84954 -14.25581 -14.17893 -13.99119 -13.66104 -13.61767 -13.54135 -13.28319 -13.12007 -12.99812 -12.92755 -12.63033 -12.31648 -12.04003 -11.91302 -11.68773 -11.36934 -11.10401 -10.83566 -10.82043 -10.53331 -9.88135 -8.49435 -6.59449 -0.53711 0.19988 1.23051 1.25945 1.37726 1.40263 1.79124 2.17911 2.70103 2.84526 3.12297 3.68979 3.78941 3.82549 3.92727 4.11172 4.16969 4.20529 4.32779 4.52332 4.53517 4.66691 4.72556 4.74410 4.91194 4.95039 4.97825 5.03912 5.07721 5.15302 5.22489 5.25803 5.30388 5.40985 5.56236 5.68421 6.09679 6.48027 6.66100 6.96548 7.08980 8.66416 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.005265 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.842953 B = 5316.841889 C = 5676.659140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.187 3.813 4 H 0.040 0.960 5 C -0.534 4.534 6 H 0.042 0.958 7 C 0.036 3.964 8 N -0.923 5.923 9 Si 0.929 3.071 10 H -0.270 1.270 11 H -0.262 1.262 12 H -0.246 1.246 13 O -0.343 6.343 14 C 0.503 3.497 15 O -0.529 6.529 16 C 0.057 3.943 17 C -0.111 4.111 18 C -0.078 4.078 19 C -0.097 4.097 20 C -0.113 4.113 21 C 0.102 3.898 22 C -0.106 4.106 23 N -0.472 5.472 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.277 0.723 30 H 0.155 0.845 31 H 0.188 0.812 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.179 7.740 14.683 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.133 3.867 4 H 0.058 0.942 5 C -0.571 4.571 6 H 0.060 0.940 7 C -0.165 4.165 8 N -0.561 5.561 9 Si 0.751 3.249 10 H -0.195 1.195 11 H -0.187 1.187 12 H -0.170 1.170 13 O -0.258 6.258 14 C 0.348 3.652 15 O -0.420 6.420 16 C -0.078 4.078 17 C -0.131 4.131 18 C -0.103 4.103 19 C -0.099 4.099 20 C -0.170 4.170 21 C -0.040 4.040 22 C -0.163 4.163 23 N -0.184 5.184 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.172 0.828 31 H 0.206 0.794 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.368 7.241 14.145 22.813 hybrid contribution -0.293 0.296 -1.244 1.311 sum -16.661 7.537 12.901 22.379 Atomic orbital electron populations 1.21812 0.95072 1.01880 1.00864 1.22017 0.95704 0.96626 1.02404 1.20957 0.94120 0.90682 0.80905 0.94249 1.20921 0.89605 1.51873 0.94739 0.93996 1.25676 0.96225 0.93125 1.01466 1.69965 1.11277 1.48915 1.25906 0.86011 0.80081 0.79800 0.78998 1.19505 1.18690 1.16983 1.86797 1.34805 1.62256 1.41931 1.21465 0.80037 0.76033 0.87649 1.90718 1.55438 1.59883 1.35966 1.20132 0.94510 1.01868 0.91301 1.22264 0.94339 0.95233 1.01278 1.21952 1.01297 0.96878 0.90136 1.21540 0.93323 0.96169 0.98899 1.21026 1.03784 1.00820 0.91329 1.21932 0.95124 0.93579 0.93348 1.20930 0.98374 1.03719 0.93232 1.67439 1.33797 1.17477 0.99714 0.93228 0.94636 0.90540 0.92025 0.90825 0.91356 0.82768 0.79448 0.88774 0.88831 0.89052 0.89279 0.86641 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 8.57 71.98 0.62 -4.90 16 2 C -0.13 -6.02 5.63 30.60 0.17 -5.85 16 3 C 0.19 10.06 1.91 29.85 0.06 10.12 16 4 H 0.04 2.17 4.31 -2.39 -0.01 2.16 16 5 C -0.53 -32.95 9.25 25.60 0.24 -32.71 16 6 H 0.04 2.87 8.06 -2.91 -0.02 2.85 16 7 C 0.04 2.16 5.47 84.65 0.46 2.62 16 8 N -0.92 -57.73 13.96 21.45 0.30 -57.44 16 9 Si 0.93 45.47 26.99 68.60 1.85 47.32 16 10 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.25 -11.48 6.82 99.48 0.68 -10.80 16 13 O -0.34 -18.10 9.63 -55.90 -0.54 -18.64 16 14 C 0.50 23.11 6.43 70.43 0.45 23.57 16 15 O -0.53 -24.56 13.51 20.07 0.27 -24.29 16 16 C 0.06 2.14 6.75 41.88 0.28 2.42 16 17 C -0.11 -3.05 9.63 22.62 0.22 -2.83 16 18 C -0.08 -1.42 9.85 22.44 0.22 -1.20 16 19 C -0.10 -1.76 5.91 -19.69 -0.12 -1.88 16 20 C -0.11 -0.88 9.62 71.24 0.69 -0.20 16 21 C 0.10 2.63 6.78 42.69 0.29 2.92 16 22 C -0.11 -1.97 9.77 71.23 0.70 -1.27 16 23 N -0.47 -17.41 10.03 -173.13 -1.74 -19.14 16 24 H 0.05 2.00 7.82 -2.39 -0.02 1.98 16 25 H 0.03 1.43 6.04 -2.39 -0.01 1.42 16 26 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.06 2.83 8.14 -2.38 -0.02 2.81 16 28 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 30 H 0.15 3.93 7.64 -2.91 -0.02 3.91 16 31 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.39 8.09 -2.39 -0.02 0.37 16 34 H 0.09 0.51 5.95 -2.39 -0.01 0.49 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.12 1.20 5.93 -2.39 -0.01 1.19 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.12 309.77 5.47 -72.66 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.05 Total: 8.72 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 4.27 Total: -9.19 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -1.44 Total: -76.58 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.27 Total: -42.93 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.85 Total: 47.32 kcal Total: -78.12 5.47 -72.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.487 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds