Wall clock time and date at job start Sun Mar 29 2020 23:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 H 1.09000 * 109.47338 * 54.99433 * 3 2 1 5 5 C 1.50704 * 109.47205 * 175.00087 * 3 2 1 6 6 H 1.08001 * 119.99837 * 119.99727 * 5 3 2 7 7 C 1.37874 * 119.99423 * 299.99339 * 5 3 2 8 8 N 1.31513 * 120.00274 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99475 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46858 * 60.00584 * 9 7 5 11 11 H 1.48501 * 109.46668 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47184 * 299.99886 * 9 7 5 13 13 O 1.45202 * 109.46473 * 294.99503 * 3 2 1 14 14 C 1.34682 * 116.99919 * 90.00589 * 13 3 2 15 15 O 1.21433 * 119.99761 * 359.97438 * 14 13 3 16 16 C 1.48065 * 120.00131 * 180.26979 * 14 13 3 17 17 C 1.39345 * 119.72799 * 179.44955 * 16 14 13 18 18 C 1.38592 * 119.05731 * 179.73371 * 17 16 14 19 19 C 1.38623 * 118.48964 * 0.53508 * 18 17 16 20 20 C 1.50699 * 120.32387 * 179.70835 * 19 18 17 21 21 C 1.38583 * 119.35773 * 359.72285 * 19 18 17 22 22 C 1.50701 * 119.54956 * 180.02562 * 21 19 18 23 23 N 1.31504 * 120.90904 * 0.02562 * 21 19 18 24 24 H 1.08992 * 109.46950 * 300.00487 * 1 2 3 25 25 H 1.09000 * 109.46771 * 60.00073 * 1 2 3 26 26 H 1.09004 * 109.47052 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47480 * 239.99334 * 2 1 3 28 28 H 1.09000 * 109.46771 * 119.99927 * 2 1 3 29 29 H 0.97006 * 119.99920 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.47092 * 0.02562 * 17 16 14 31 31 H 1.08005 * 120.75785 * 180.23743 * 18 17 16 32 32 H 1.08994 * 109.47083 * 270.01686 * 20 19 18 33 33 H 1.09004 * 109.47083 * 30.01843 * 20 19 18 34 34 H 1.09005 * 109.47210 * 150.02166 * 20 19 18 35 35 H 1.09001 * 109.47014 * 269.98344 * 22 21 19 36 36 H 1.08997 * 109.46935 * 29.97899 * 22 21 19 37 37 H 1.08991 * 109.47271 * 149.98381 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8813 1.3819 10 1 6.4995 2.2815 1.3822 11 1 6.3978 0.2168 2.6505 12 1 6.5976 0.1472 0.2351 13 8 1.6560 2.0915 -1.2408 14 6 0.4689 2.7275 -1.2562 15 8 -0.2265 2.7392 -0.2608 16 6 0.0088 3.4067 -2.4888 17 6 -1.2255 4.0532 -2.5019 18 6 -1.6400 4.6893 -3.6613 19 6 -0.8106 4.6472 -4.7712 20 6 -1.2233 5.3193 -6.0554 21 6 0.4018 3.9809 -4.6886 22 6 1.3071 3.9330 -5.8924 23 7 0.7731 3.3898 -3.5742 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0617 2.9496 30 1 -1.8483 4.0625 -1.6195 31 1 -2.5898 5.2019 -3.7008 32 1 -1.7789 4.6133 -6.6726 33 1 -1.8541 6.1790 -5.8291 34 1 -0.3354 5.6516 -6.5933 35 1 1.0696 3.0535 -6.4909 36 1 1.1611 4.8310 -6.4927 37 1 2.3451 3.8798 -5.5645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842342650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:02 Heat of formation + Delta-G solvation = -64.616837 kcal Electronic energy + Delta-G solvation = -19680.039950 eV Core-core repulsion = 16615.157231 eV Total energy + Delta-G solvation = -3064.882719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.59596 -39.15700 -35.81428 -34.03506 -33.37934 -33.02420 -31.29870 -28.56557 -27.77214 -26.98815 -23.72565 -22.94260 -22.26132 -20.64883 -19.56505 -17.72363 -16.80535 -16.20547 -15.77912 -15.44090 -15.09275 -14.66625 -14.53550 -14.01162 -13.36753 -13.10317 -13.03417 -12.80881 -12.77700 -12.52959 -12.14107 -11.93346 -11.60215 -11.41885 -11.23619 -11.14538 -10.90155 -10.61754 -10.25429 -9.98719 -9.79305 -9.71512 -9.35905 -9.31409 -8.83709 -8.75484 -8.40236 -6.13464 -4.19826 0.66969 1.22062 2.94513 3.30558 3.33023 3.34918 3.49759 3.96957 4.24571 4.39501 4.54445 4.72581 4.72737 5.09234 5.18416 5.25283 5.35499 5.48842 5.51114 5.57139 5.58650 5.74504 5.97373 6.08855 6.15927 6.26495 6.33814 6.48486 6.60612 6.90782 6.98665 7.20449 7.25493 7.64917 7.77353 7.85343 8.00177 8.20311 8.66222 8.93758 9.44792 10.93455 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.004977 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.762790 B = 5624.734069 C = 6286.760224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.048 0.952 5 C -0.519 4.519 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.912 3.088 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.328 6.328 14 C 0.509 3.491 15 O -0.508 6.508 16 C 0.105 3.895 17 C -0.116 4.116 18 C -0.085 4.085 19 C -0.121 4.121 20 C -0.113 4.113 21 C 0.120 3.880 22 C -0.106 4.106 23 N -0.427 5.427 24 H 0.053 0.947 25 H 0.030 0.970 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.266 0.734 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.088 7.985 -14.680 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.166 3.834 4 H 0.065 0.935 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 O -0.242 6.242 14 C 0.351 3.649 15 O -0.398 6.398 16 C -0.032 4.032 17 C -0.136 4.136 18 C -0.111 4.111 19 C -0.123 4.123 20 C -0.170 4.170 21 C -0.021 4.021 22 C -0.163 4.163 23 N -0.139 5.139 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.412 7.397 -14.086 17.997 hybrid contribution -0.008 0.299 0.350 0.460 sum -8.420 7.696 -13.736 17.855 Atomic orbital electron populations 1.21866 0.98467 0.99049 1.00656 1.22023 0.92570 0.99306 1.03452 1.20767 0.95203 0.88857 0.78612 0.93458 1.21013 0.89606 1.38854 1.06209 0.91257 1.24872 0.99209 0.94777 0.95035 1.69883 1.35425 1.37929 1.09510 0.86335 0.83932 0.78472 0.77407 1.20008 1.21069 1.19920 1.86661 1.32712 1.61302 1.43559 1.20587 0.81463 0.76835 0.85982 1.90785 1.55874 1.58840 1.34278 1.20488 0.92204 0.98432 0.92104 1.22107 0.95919 0.95950 0.99657 1.21424 0.99681 0.98167 0.91817 1.20974 0.95268 0.99065 0.97030 1.20847 1.02286 1.00062 0.93833 1.21270 0.93125 0.93750 0.93969 1.20793 0.99449 1.02672 0.93417 1.67605 1.32952 1.14983 0.98315 0.92761 0.95101 0.94740 0.93864 0.87230 0.92384 0.83298 0.84110 0.90587 0.91233 0.90545 0.90239 0.90429 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.56 37.16 0.32 -2.94 16 2 C -0.14 -3.49 5.49 -26.73 -0.15 -3.64 16 3 C 0.22 6.03 2.25 -27.88 -0.06 5.97 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -15.00 8.90 -34.44 -0.31 -15.31 16 6 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 7 C 0.06 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.89 -25.50 11.29 55.43 0.63 -24.88 16 9 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 O -0.33 -8.46 9.62 -40.44 -0.39 -8.85 16 14 C 0.51 11.64 6.40 34.76 0.22 11.87 16 15 O -0.51 -12.12 13.51 -19.21 -0.26 -12.38 16 16 C 0.10 1.97 6.75 -83.02 -0.56 1.41 16 17 C -0.12 -1.72 9.63 -39.04 -0.38 -2.10 16 18 C -0.09 -0.97 9.85 -39.31 -0.39 -1.35 16 19 C -0.12 -1.34 5.91 -104.35 -0.62 -1.96 16 20 C -0.11 -0.77 9.62 36.00 0.35 -0.43 16 21 C 0.12 1.64 6.78 -82.60 -0.56 1.08 16 22 C -0.11 -1.07 9.77 36.01 0.35 -0.72 16 23 N -0.43 -7.77 10.03 -6.07 -0.06 -7.83 16 24 H 0.05 1.27 7.79 -51.93 -0.40 0.87 16 25 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 3.02 5.95 -51.93 -0.31 2.71 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 30 H 0.15 2.06 7.64 -52.49 -0.40 1.66 16 31 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 34 H 0.08 0.44 5.95 -51.93 -0.31 0.13 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.55 5.93 -51.93 -0.31 0.25 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -32.30 309.97 -7.22 -39.52 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.92 Total: -0.30 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.87 Total: -6.45 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.57 Total: -32.71 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.65 Total: -21.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.30 -7.22 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.093 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds