Wall clock time and date at job start Sun Mar 29 2020 23:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47299 * 2 1 4 4 H 1.09000 * 109.47338 * 54.99433 * 3 2 1 5 5 C 1.50704 * 109.47205 * 175.00087 * 3 2 1 6 6 H 1.08001 * 119.99837 * 119.99727 * 5 3 2 7 7 C 1.37874 * 119.99423 * 299.99339 * 5 3 2 8 8 N 1.31513 * 120.00274 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99475 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46858 * 60.00584 * 9 7 5 11 11 H 1.48501 * 109.46668 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47184 * 299.99886 * 9 7 5 13 13 O 1.45202 * 109.46473 * 294.99503 * 3 2 1 14 14 C 1.34682 * 116.99919 * 90.00589 * 13 3 2 15 15 O 1.21433 * 119.99761 * 359.97438 * 14 13 3 16 16 C 1.48065 * 120.00131 * 180.26979 * 14 13 3 17 17 C 1.39345 * 119.72799 * 179.44955 * 16 14 13 18 18 C 1.38592 * 119.05731 * 179.73371 * 17 16 14 19 19 C 1.38623 * 118.48964 * 0.53508 * 18 17 16 20 20 C 1.50699 * 120.32387 * 179.70835 * 19 18 17 21 21 C 1.38583 * 119.35773 * 359.72285 * 19 18 17 22 22 C 1.50701 * 119.54956 * 180.02562 * 21 19 18 23 23 N 1.31504 * 120.90904 * 0.02562 * 21 19 18 24 24 H 1.08992 * 109.46950 * 300.00487 * 1 2 3 25 25 H 1.09000 * 109.46771 * 60.00073 * 1 2 3 26 26 H 1.09004 * 109.47052 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47480 * 239.99334 * 2 1 3 28 28 H 1.09000 * 109.46771 * 119.99927 * 2 1 3 29 29 H 0.97006 * 119.99920 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.47092 * 0.02562 * 17 16 14 31 31 H 1.08005 * 120.75785 * 180.23743 * 18 17 16 32 32 H 1.08994 * 109.47083 * 270.01686 * 20 19 18 33 33 H 1.09004 * 109.47083 * 30.01843 * 20 19 18 34 34 H 1.09005 * 109.47210 * 150.02166 * 20 19 18 35 35 H 1.09001 * 109.47014 * 269.98344 * 22 21 19 36 36 H 1.08997 * 109.46935 * 29.97899 * 22 21 19 37 37 H 1.08991 * 109.47271 * 149.98381 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3368 2.1729 9 14 6.0050 0.8813 1.3819 10 1 6.4995 2.2815 1.3822 11 1 6.3978 0.2168 2.6505 12 1 6.5976 0.1472 0.2351 13 8 1.6560 2.0915 -1.2408 14 6 0.4689 2.7275 -1.2562 15 8 -0.2265 2.7392 -0.2608 16 6 0.0088 3.4067 -2.4888 17 6 -1.2255 4.0532 -2.5019 18 6 -1.6400 4.6893 -3.6613 19 6 -0.8106 4.6472 -4.7712 20 6 -1.2233 5.3193 -6.0554 21 6 0.4018 3.9809 -4.6886 22 6 1.3071 3.9330 -5.8924 23 7 0.7731 3.3898 -3.5742 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8935 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0617 2.9496 30 1 -1.8483 4.0625 -1.6195 31 1 -2.5898 5.2019 -3.7008 32 1 -1.7789 4.6133 -6.6726 33 1 -1.8541 6.1790 -5.8291 34 1 -0.3354 5.6516 -6.5933 35 1 1.0696 3.0535 -6.4909 36 1 1.1611 4.8310 -6.4927 37 1 2.3451 3.8798 -5.5645 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842342650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:02 Heat of formation + Delta-G solvation = -84.386533 kcal Electronic energy + Delta-G solvation = -19680.897229 eV Core-core repulsion = 16615.157231 eV Total energy + Delta-G solvation = -3065.739997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.89892 -40.79498 -37.72640 -35.58332 -34.92793 -34.06882 -33.36489 -29.65660 -29.22671 -28.48062 -25.47171 -24.38937 -23.45002 -22.21305 -21.42463 -19.40425 -18.67384 -17.73761 -17.42658 -17.15374 -16.53168 -16.07289 -15.74723 -15.26361 -14.89351 -14.70931 -14.20506 -14.08791 -13.65692 -13.61704 -13.40682 -13.34672 -13.24606 -13.12135 -12.96017 -12.82682 -12.59857 -12.30634 -12.16251 -11.83647 -11.66956 -11.43252 -10.87241 -10.81941 -10.57382 -10.52066 -9.87594 -8.29340 -6.46444 -0.52872 0.20124 1.39112 1.43109 1.44276 1.51656 1.86063 2.38339 2.70677 2.99534 3.12831 3.70339 3.81113 3.82786 3.95348 4.18705 4.32044 4.34228 4.48839 4.53825 4.67522 4.73204 4.74778 4.77347 4.92245 4.98889 5.05182 5.16050 5.16629 5.22871 5.26315 5.30749 5.47191 5.61933 5.68832 5.87472 6.05707 6.53206 6.71861 6.99943 7.24492 8.77612 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026794 B = 0.004977 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.762790 B = 5624.734069 C = 6286.760224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.221 3.779 4 H 0.009 0.991 5 C -0.553 4.553 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.982 3.018 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.265 1.265 13 O -0.346 6.346 14 C 0.502 3.498 15 O -0.531 6.531 16 C 0.059 3.941 17 C -0.113 4.113 18 C -0.077 4.077 19 C -0.098 4.098 20 C -0.113 4.113 21 C 0.102 3.898 22 C -0.105 4.105 23 N -0.470 5.470 24 H 0.040 0.960 25 H 0.029 0.971 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.272 0.728 30 H 0.151 0.849 31 H 0.188 0.812 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 9.259 -17.307 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.027 0.973 5 C -0.591 4.591 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.805 3.195 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.190 1.190 13 O -0.261 6.261 14 C 0.347 3.653 15 O -0.422 6.422 16 C -0.075 4.075 17 C -0.133 4.133 18 C -0.102 4.102 19 C -0.100 4.100 20 C -0.169 4.169 21 C -0.039 4.039 22 C -0.162 4.162 23 N -0.183 5.183 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.205 0.795 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.304 8.675 -16.715 21.005 hybrid contribution 0.160 0.007 1.028 1.040 sum -9.144 8.682 -15.688 20.127 Atomic orbital electron populations 1.21710 0.96225 1.00769 0.99937 1.21865 0.94547 0.97902 1.02326 1.20499 0.94808 0.89467 0.78426 0.97272 1.21260 0.90393 1.40396 1.07030 0.92164 1.25793 1.04404 0.93646 0.94122 1.69995 1.37549 1.37683 1.09807 0.85251 0.77443 0.78780 0.78029 1.19486 1.19685 1.18969 1.86645 1.34807 1.62230 1.42383 1.21457 0.80119 0.76115 0.87632 1.90736 1.56051 1.59772 1.35648 1.20087 0.94491 1.01819 0.91137 1.22247 0.94237 0.95469 1.01368 1.21945 1.01215 0.96916 0.90149 1.21545 0.93383 0.96307 0.98735 1.21023 1.03621 1.00811 0.91448 1.21971 0.95020 0.93497 0.93451 1.20931 0.97666 1.05086 0.92470 1.67438 1.34293 1.17007 0.99536 0.94057 0.95188 0.91628 0.93971 0.89041 0.91857 0.83125 0.79484 0.88611 0.88953 0.89017 0.88968 0.86736 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.56 71.98 0.62 -5.45 16 2 C -0.13 -6.93 5.49 30.60 0.17 -6.76 16 3 C 0.22 13.02 2.25 29.85 0.07 13.09 16 4 H 0.01 0.61 7.16 -2.39 -0.02 0.60 16 5 C -0.55 -33.56 8.90 25.60 0.23 -33.33 16 6 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 7 C 0.02 1.17 5.29 84.65 0.45 1.61 16 8 N -0.91 -53.78 11.29 21.45 0.24 -53.54 16 9 Si 0.98 44.64 29.54 68.60 2.03 46.66 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 O -0.35 -19.07 9.62 -55.92 -0.54 -19.61 16 14 C 0.50 24.51 6.40 70.43 0.45 24.96 16 15 O -0.53 -27.06 13.51 20.05 0.27 -26.79 16 16 C 0.06 2.33 6.75 41.88 0.28 2.61 16 17 C -0.11 -3.29 9.63 22.62 0.22 -3.08 16 18 C -0.08 -1.49 9.85 22.45 0.22 -1.27 16 19 C -0.10 -1.81 5.91 -19.69 -0.12 -1.92 16 20 C -0.11 -0.89 9.62 71.24 0.69 -0.21 16 21 C 0.10 2.66 6.78 42.69 0.29 2.95 16 22 C -0.10 -1.89 9.77 71.24 0.70 -1.20 16 23 N -0.47 -17.55 10.03 -173.12 -1.74 -19.29 16 24 H 0.04 2.01 7.79 -2.39 -0.02 1.99 16 25 H 0.03 1.38 6.06 -2.39 -0.01 1.36 16 26 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.09 5.26 5.95 -2.39 -0.01 5.24 16 29 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 30 H 0.15 4.20 7.64 -2.91 -0.02 4.18 16 31 H 0.19 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.42 8.09 -2.39 -0.02 0.40 16 34 H 0.09 0.51 5.95 -2.38 -0.01 0.50 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.16 5.93 -2.39 -0.01 1.15 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -76.21 309.97 5.59 -70.62 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.07 Total: 9.94 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.25 Total: -8.00 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -1.49 Total: -72.83 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.27 Total: -46.40 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -76.21 5.59 -70.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842342650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.764 kcal (2) G-P(sol) polarization free energy of solvation -76.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds