Wall clock time and date at job start Sun Mar 29 2020 23:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 H 1.09002 * 109.46821 * 55.00646 * 3 2 1 5 5 C 1.50698 * 109.47254 * 175.00231 * 3 2 1 6 6 H 1.08001 * 119.99810 * 120.00346 * 5 3 2 7 7 C 1.37871 * 119.99883 * 300.00593 * 5 3 2 8 8 N 1.31511 * 120.00532 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99970 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47303 * 59.99495 * 9 7 5 11 11 H 1.48496 * 109.47492 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46858 * 300.00028 * 9 7 5 13 13 N 1.46496 * 109.47129 * 295.00811 * 3 2 1 14 14 C 1.34777 * 120.00258 * 85.00009 * 13 3 2 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 3 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 3 17 17 H 1.08996 * 115.55128 * 34.33271 * 16 14 13 18 18 C 1.53001 * 117.49756 * 248.61806 * 16 14 13 19 19 C 1.52999 * 59.99986 * 252.51526 * 18 16 14 20 20 H 1.08999 * 117.50075 * 107.49206 * 19 18 16 21 21 C 1.50701 * 117.51603 * 252.52125 * 19 18 16 22 22 C 1.34515 * 125.78873 * 188.34520 * 21 19 18 23 23 C 1.41386 * 106.83998 * 179.88618 * 22 21 19 24 24 C 1.34517 * 106.83919 * 0.37396 * 23 22 21 25 25 O 1.34299 * 108.42156 * 359.76981 * 24 23 22 26 26 H 1.09004 * 109.46744 * 299.99110 * 1 2 3 27 27 H 1.08994 * 109.47523 * 59.99358 * 1 2 3 28 28 H 1.09007 * 109.47215 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46744 * 240.00890 * 2 1 3 30 30 H 1.08994 * 109.47523 * 120.00642 * 2 1 3 31 31 H 0.97005 * 120.00437 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99694 * 264.99399 * 13 3 2 33 33 H 1.09004 * 117.49834 * 0.02562 * 18 16 14 34 34 H 1.08997 * 117.49999 * 145.02096 * 18 16 14 35 35 H 1.07998 * 126.58213 * 0.02562 * 22 21 19 36 36 H 1.08002 * 126.57969 * 180.11922 * 23 22 21 37 37 H 1.07996 * 125.78800 * 179.74977 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8783 1.2278 8 7 3.4063 0.3373 2.1731 9 14 6.0050 0.8812 1.3816 10 1 6.4995 2.2815 1.3820 11 1 6.3979 0.2176 2.6506 12 1 6.5975 0.1474 0.2345 13 7 1.6523 2.0975 -1.2517 14 6 0.4350 2.6645 -1.3667 15 8 -0.3397 2.6320 -0.4341 16 6 0.0365 3.3388 -2.6542 17 1 0.4294 2.8848 -3.5639 18 6 -0.1221 4.8604 -2.6350 19 6 -1.3586 3.9634 -2.7220 20 1 -1.9881 3.8867 -1.8355 21 6 -2.0841 3.9040 -4.0415 22 6 -3.2671 3.3029 -4.2624 23 6 -3.5738 3.4923 -5.6295 24 6 -2.5559 4.1905 -6.1642 25 8 -1.6566 4.4371 -5.1977 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.8294 -0.0606 2.9501 32 1 2.2718 2.1233 -1.9977 33 1 0.0622 5.3738 -1.6913 34 1 0.1667 5.4079 -3.5322 35 1 -3.8684 2.7785 -3.5346 36 1 -4.4542 3.1399 -6.1464 37 1 -2.4755 4.5000 -7.1957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863905462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:43 Heat of formation + Delta-G solvation = -23.113768 kcal Electronic energy + Delta-G solvation = -19444.026276 eV Core-core repulsion = 16380.943265 eV Total energy + Delta-G solvation = -3063.083011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.50035 -40.94114 -37.99154 -36.57375 -34.28105 -33.90089 -32.77953 -30.43165 -29.05787 -25.85612 -24.49192 -24.09747 -22.59738 -21.81690 -21.10646 -20.87572 -19.02481 -18.41385 -17.49625 -17.21984 -16.85284 -16.33061 -16.20398 -15.70765 -15.20717 -14.59458 -14.21685 -14.01945 -13.73449 -13.62023 -13.46533 -13.36668 -13.15849 -12.92832 -12.85912 -12.65222 -12.18645 -12.12201 -11.92817 -11.62397 -11.50972 -11.06486 -10.81095 -10.69426 -10.50266 -9.63223 -9.27423 -8.15558 -6.33115 0.71196 1.45468 1.47139 1.54931 1.60885 1.77298 2.01208 2.36428 2.61783 2.88938 3.13746 3.53745 3.66382 3.86384 4.12105 4.16653 4.20976 4.38485 4.48737 4.56894 4.65176 4.75971 4.85872 4.91939 5.04782 5.06844 5.07868 5.21685 5.25784 5.43455 5.55990 5.61510 5.62854 5.79520 5.92837 6.16994 6.22116 6.74688 6.99366 7.33840 7.57893 8.89547 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036645 B = 0.004039 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.910810 B = 6930.690764 C = 7300.609372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.700 5.700 14 C 0.528 3.472 15 O -0.586 6.586 16 C -0.174 4.174 17 H 0.140 0.860 18 C -0.121 4.121 19 C -0.051 4.051 20 H 0.133 0.867 21 C 0.003 3.997 22 C -0.216 4.216 23 C -0.227 4.227 24 C -0.037 4.037 25 O -0.186 6.186 26 H 0.026 0.974 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.404 0.596 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.170 0.830 37 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 6.958 -16.590 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.348 5.348 14 C 0.315 3.685 15 O -0.467 6.467 16 C -0.195 4.195 17 H 0.158 0.842 18 C -0.158 4.158 19 C -0.070 4.070 20 H 0.150 0.850 21 C -0.047 4.047 22 C -0.236 4.236 23 C -0.245 4.245 24 C -0.104 4.104 25 O -0.082 6.082 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.238 0.762 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.751 6.976 -15.765 19.333 hybrid contribution 0.824 -0.439 0.335 0.992 sum -7.927 6.537 -15.430 18.538 Atomic orbital electron populations 1.21680 0.96985 0.99140 1.00278 1.21794 0.93757 0.99234 1.01274 1.18382 0.93659 0.89144 0.81343 0.98244 1.21557 0.91445 1.39056 1.06769 0.91054 1.25762 1.03309 0.94338 0.94998 1.70039 1.37142 1.38292 1.09826 0.85434 0.79114 0.78466 0.77533 1.19625 1.21204 1.18969 1.46194 1.15328 1.55658 1.17636 1.19999 0.81795 0.78189 0.88486 1.90648 1.52488 1.61444 1.42159 1.22352 1.01244 0.98480 0.97395 0.84222 1.23129 0.97738 0.89625 1.05357 1.20357 0.89379 1.05150 0.92110 0.84952 1.21300 0.95999 1.01367 0.86005 1.21845 0.97865 1.05446 0.98407 1.22165 1.02741 1.05373 0.94259 1.24846 0.88665 1.02199 0.94666 1.83961 1.45024 1.62071 1.17172 0.95455 0.93797 0.93631 0.94163 0.90940 0.92586 0.76178 0.87711 0.85148 0.83263 0.81244 0.74147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.51 71.98 0.61 -5.03 16 2 C -0.12 -6.05 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.29 2.24 44.25 0.10 14.39 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 5 C -0.55 -29.09 8.73 25.60 0.22 -28.87 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.87 5.29 84.65 0.45 1.31 16 8 N -0.91 -52.34 11.29 21.44 0.24 -52.09 16 9 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 13 N -0.70 -28.96 5.02 -446.10 -2.24 -31.20 16 14 C 0.53 20.74 6.18 87.66 0.54 21.28 16 15 O -0.59 -27.46 13.39 -3.03 -0.04 -27.51 16 16 C -0.17 -4.99 5.89 -11.54 -0.07 -5.06 16 17 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 18 C -0.12 -2.93 9.87 30.59 0.30 -2.63 16 19 C -0.05 -1.38 5.75 -11.54 -0.07 -1.45 16 20 H 0.13 3.93 7.67 -2.39 -0.02 3.91 16 21 C 0.00 0.07 6.80 24.83 0.17 0.24 16 22 C -0.22 -5.08 10.81 22.19 0.24 -4.84 16 23 C -0.23 -4.14 10.91 22.19 0.24 -3.90 16 24 C -0.04 -0.60 12.09 66.97 0.81 0.21 16 25 O -0.19 -4.13 10.36 -2.48 -0.03 -4.15 16 26 H 0.03 1.33 7.85 -2.39 -0.02 1.31 16 27 H 0.04 1.94 5.64 -2.39 -0.01 1.92 16 28 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 31 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 32 H 0.40 14.25 8.54 -92.71 -0.79 13.46 16 33 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.13 2.54 7.97 -2.39 -0.02 2.52 16 35 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.24 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -66.69 313.44 3.97 -62.72 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.29 Total: 28.48 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.72 Total: -20.22 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.00 Total: -83.30 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.07 Total: -31.66 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -66.69 3.97 -62.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863905462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.610 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds