Wall clock time and date at job start Sun Mar 29 2020 23:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 C 1.53007 * 109.47144 * 240.00247 * 2 1 3 5 5 O 1.42901 * 109.47256 * 120.00112 * 2 1 3 6 6 C 1.35911 * 116.99843 * 63.20177 * 5 2 1 7 7 C 1.38874 * 119.98322 * 355.43972 * 6 5 2 8 8 C 1.38263 * 120.25502 * 180.02562 * 7 6 5 9 9 C 1.37988 * 120.20733 * 359.95631 * 8 7 6 10 10 C 1.39629 * 119.96231 * 0.06128 * 9 8 7 11 11 C 1.47739 * 120.12620 * 179.97438 * 10 9 8 12 12 O 1.21588 * 120.00169 * 179.97438 * 11 10 9 13 13 N 1.34776 * 119.99746 * 359.97438 * 11 10 9 14 14 C 1.36869 * 119.99778 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00268 * 0.02562 * 14 13 11 16 16 C 1.39050 * 119.99897 * 180.02562 * 14 13 11 17 17 N 1.31363 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00155 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47223 * 90.00195 * 18 16 14 20 20 H 1.48498 * 109.47170 * 210.00361 * 18 16 14 21 21 H 1.48501 * 109.46764 * 330.00140 * 18 16 14 22 22 C 1.38428 * 119.98188 * 175.46211 * 6 5 2 23 23 H 1.08998 * 109.46920 * 317.83885 * 1 2 3 24 24 H 1.09006 * 109.47094 * 77.84035 * 1 2 3 25 25 H 1.09001 * 109.46999 * 197.83216 * 1 2 3 26 26 H 1.09004 * 109.46895 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46873 * 299.99741 * 3 2 1 28 28 H 1.09000 * 109.47105 * 60.00264 * 3 2 1 29 29 H 1.09005 * 109.46844 * 287.62549 * 4 2 1 30 30 H 1.09002 * 109.47236 * 47.61838 * 4 2 1 31 31 H 1.08997 * 109.46998 * 167.62279 * 4 2 1 32 32 H 1.08001 * 119.87322 * 359.97438 * 7 6 5 33 33 H 1.07994 * 119.89609 * 179.97438 * 8 7 6 34 34 H 1.08006 * 120.01364 * 179.97438 * 9 8 7 35 35 H 0.96997 * 120.00359 * 0.02562 * 13 11 10 36 36 H 0.97004 * 120.00229 * 180.02562 * 17 16 14 37 37 H 1.08006 * 120.10574 * 359.71896 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.6973 -1.9916 1.2877 7 6 0.8715 -2.5995 0.3512 8 6 0.5530 -3.9398 0.4690 9 6 1.0545 -4.6830 1.5179 10 6 1.8854 -4.0807 2.4648 11 6 2.4239 -4.8728 3.5896 12 8 3.1476 -4.3461 4.4125 13 7 2.1130 -6.1792 3.7034 14 6 2.6124 -6.9132 4.7452 15 1 3.2552 -6.4454 5.4762 16 6 2.2921 -8.2612 4.8624 17 7 1.5107 -8.8304 3.9730 18 14 2.9730 -9.2629 6.2846 19 1 2.0333 -9.1952 7.4323 20 1 3.1359 -10.6768 5.8609 21 1 4.2912 -8.7129 6.6909 22 6 2.2055 -2.7272 2.3445 23 1 -0.3633 0.7618 0.6898 24 1 -0.3633 0.2165 -1.0047 25 1 -0.3633 -0.9783 0.3147 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.8677 -1.7926 -1.1461 30 1 1.5081 -0.3505 -2.1255 31 1 3.1075 -0.5344 -1.3663 32 1 0.4758 -2.0230 -0.4719 33 1 -0.0901 -4.4066 -0.2623 34 1 0.8034 -5.7296 1.6072 35 1 1.5360 -6.5995 3.0467 36 1 1.2869 -9.7707 4.0549 37 1 2.8513 -2.2566 3.0711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874260745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:56 Heat of formation + Delta-G solvation = -39.057179 kcal Electronic energy + Delta-G solvation = -19485.396785 eV Core-core repulsion = 16421.622416 eV Total energy + Delta-G solvation = -3063.774369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66484 -38.61587 -36.76641 -34.18454 -34.04130 -31.53009 -30.64372 -29.61700 -27.59187 -27.49624 -25.23949 -23.11475 -22.07127 -20.85271 -19.11883 -18.17435 -17.18254 -16.48867 -15.78647 -15.30485 -15.19212 -14.74233 -14.20993 -14.03583 -13.66727 -13.43860 -13.39326 -13.27064 -12.75676 -12.59333 -12.23657 -12.09621 -12.00608 -11.63500 -11.58725 -11.40556 -11.14821 -10.62805 -10.59079 -10.46183 -10.42223 -10.27461 -9.62677 -8.49837 -8.49587 -8.08662 -7.85742 -6.56675 -3.89179 1.36317 1.79912 3.14193 3.21289 3.24114 3.28935 3.69528 4.09541 4.49922 4.55849 4.62836 4.75810 4.87936 5.09776 5.16684 5.29302 5.32917 5.33888 5.40467 5.49928 5.59646 5.61139 5.66122 5.78846 5.83883 5.90240 6.03886 6.06721 6.21715 6.35257 6.61644 6.77583 6.91630 7.05209 7.42651 7.69429 7.96252 8.50640 9.05837 9.42037 9.98211 10.60207 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048028 B = 0.003960 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.849058 B = 7068.574935 C = 7459.687419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.108 3.892 3 C -0.137 4.137 4 C -0.203 4.203 5 O -0.307 6.307 6 C 0.123 3.877 7 C -0.225 4.225 8 C -0.091 4.091 9 C -0.140 4.140 10 C -0.055 4.055 11 C 0.464 3.536 12 O -0.595 6.595 13 N -0.541 5.541 14 C -0.294 4.294 15 H 0.109 0.891 16 C 0.024 3.976 17 N -0.889 5.889 18 Si 0.935 3.065 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.111 4.111 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.145 0.855 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.395 0.605 36 H 0.276 0.724 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 13.124 -11.978 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.070 3.930 3 C -0.194 4.194 4 C -0.260 4.260 5 O -0.222 6.222 6 C 0.078 3.922 7 C -0.244 4.244 8 C -0.109 4.109 9 C -0.160 4.160 10 C -0.059 4.059 11 C 0.252 3.748 12 O -0.482 6.482 13 N -0.175 5.175 14 C -0.424 4.424 15 H 0.126 0.874 16 C -0.180 4.180 17 N -0.529 5.529 18 Si 0.762 3.238 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.132 4.132 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.162 0.838 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.455 13.348 -11.297 17.825 hybrid contribution -0.259 -0.888 0.006 0.926 sum -3.714 12.460 -11.292 17.220 Atomic orbital electron populations 1.22887 0.95090 1.04713 1.02888 1.21720 0.93783 0.92967 0.84484 1.21794 1.02181 0.92695 1.02712 1.22943 1.02431 1.03521 0.97063 1.86153 1.73458 1.19941 1.42644 1.18715 0.95275 0.83067 0.95094 1.21793 1.03898 0.96762 1.01902 1.20829 0.99047 0.93330 0.97690 1.21341 0.99056 1.00422 0.95166 1.20107 0.96685 0.93486 0.95637 1.17685 0.86939 0.82889 0.87290 1.90600 1.41990 1.70921 1.44693 1.41892 1.42819 1.07563 1.25185 1.19864 1.27101 0.91349 1.04082 0.87372 1.25393 0.96681 0.97098 0.98814 1.69592 1.34846 1.13470 1.34983 0.85768 0.79560 0.78319 0.80203 1.20138 1.20715 1.19127 1.20420 1.02189 0.92641 0.97916 0.91634 0.91257 0.89604 0.91541 0.90700 0.91536 0.89316 0.91260 0.91625 0.83782 0.85904 0.85450 0.77042 0.91422 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 8.11 37.16 0.30 -1.60 16 2 C 0.11 1.18 1.11 -90.62 -0.10 1.08 16 3 C -0.14 -1.20 8.73 37.16 0.32 -0.88 16 4 C -0.20 -1.98 8.08 37.16 0.30 -1.68 16 5 O -0.31 -4.62 9.79 -19.46 -0.19 -4.81 16 6 C 0.12 2.02 6.05 -39.28 -0.24 1.79 16 7 C -0.22 -3.15 5.72 -39.34 -0.22 -3.38 16 8 C -0.09 -1.33 10.03 -39.66 -0.40 -1.72 16 9 C -0.14 -2.51 9.54 -39.15 -0.37 -2.88 16 10 C -0.06 -1.16 5.87 -104.99 -0.62 -1.78 16 11 C 0.46 11.90 7.72 -12.38 -0.10 11.80 16 12 O -0.60 -17.20 15.92 5.29 0.08 -17.11 16 13 N -0.54 -14.16 5.23 -11.87 -0.06 -14.22 16 14 C -0.29 -8.24 9.68 -15.00 -0.15 -8.39 16 15 H 0.11 3.15 7.15 -52.49 -0.38 2.78 16 16 C 0.02 0.62 5.50 -17.45 -0.10 0.53 16 17 N -0.89 -23.70 13.05 55.50 0.72 -22.98 16 18 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 C -0.11 -2.19 9.53 -39.00 -0.37 -2.56 16 23 H 0.06 0.61 8.01 -51.93 -0.42 0.19 16 24 H 0.07 0.51 7.83 -51.93 -0.41 0.10 16 25 H 0.09 0.93 4.76 -51.93 -0.25 0.68 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.97 4.48 -51.93 -0.23 0.74 16 30 H 0.07 0.52 7.88 -51.93 -0.41 0.11 16 31 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.14 1.62 3.59 -52.49 -0.19 1.43 16 33 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.13 2.23 6.40 -52.48 -0.34 1.90 16 35 H 0.39 9.74 5.92 -40.82 -0.24 9.50 16 36 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.14 2.84 7.65 -52.48 -0.40 2.44 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -31.21 303.07 -6.13 -37.34 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.50 Total: 11.27 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.73 Total: -9.68 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.66 Total: -37.20 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.11 Total: -21.93 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.21 -6.13 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874260745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.713 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds