Wall clock time and date at job start Sun Mar 29 2020 23:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 C 1.53007 * 109.47144 * 240.00247 * 2 1 3 5 5 O 1.42901 * 109.47256 * 120.00112 * 2 1 3 6 6 C 1.35911 * 116.99843 * 63.20177 * 5 2 1 7 7 C 1.38874 * 119.98322 * 355.43972 * 6 5 2 8 8 C 1.38263 * 120.25502 * 180.02562 * 7 6 5 9 9 C 1.37988 * 120.20733 * 359.95631 * 8 7 6 10 10 C 1.39629 * 119.96231 * 0.06128 * 9 8 7 11 11 C 1.47739 * 120.12620 * 179.97438 * 10 9 8 12 12 O 1.21588 * 120.00169 * 179.97438 * 11 10 9 13 13 N 1.34776 * 119.99746 * 359.97438 * 11 10 9 14 14 C 1.36869 * 119.99778 * 179.97438 * 13 11 10 15 15 H 1.07997 * 120.00268 * 0.02562 * 14 13 11 16 16 C 1.39050 * 119.99897 * 180.02562 * 14 13 11 17 17 N 1.31363 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00155 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47223 * 90.00195 * 18 16 14 20 20 H 1.48498 * 109.47170 * 210.00361 * 18 16 14 21 21 H 1.48501 * 109.46764 * 330.00140 * 18 16 14 22 22 C 1.38428 * 119.98188 * 175.46211 * 6 5 2 23 23 H 1.08998 * 109.46920 * 317.83885 * 1 2 3 24 24 H 1.09006 * 109.47094 * 77.84035 * 1 2 3 25 25 H 1.09001 * 109.46999 * 197.83216 * 1 2 3 26 26 H 1.09004 * 109.46895 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46873 * 299.99741 * 3 2 1 28 28 H 1.09000 * 109.47105 * 60.00264 * 3 2 1 29 29 H 1.09005 * 109.46844 * 287.62549 * 4 2 1 30 30 H 1.09002 * 109.47236 * 47.61838 * 4 2 1 31 31 H 1.08997 * 109.46998 * 167.62279 * 4 2 1 32 32 H 1.08001 * 119.87322 * 359.97438 * 7 6 5 33 33 H 1.07994 * 119.89609 * 179.97438 * 8 7 6 34 34 H 1.08006 * 120.01364 * 179.97438 * 9 8 7 35 35 H 0.96997 * 120.00359 * 0.02562 * 13 11 10 36 36 H 0.97004 * 120.00229 * 180.02562 * 17 16 14 37 37 H 1.08006 * 120.10574 * 359.71896 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.6973 -1.9916 1.2877 7 6 0.8715 -2.5995 0.3512 8 6 0.5530 -3.9398 0.4690 9 6 1.0545 -4.6830 1.5179 10 6 1.8854 -4.0807 2.4648 11 6 2.4239 -4.8728 3.5896 12 8 3.1476 -4.3461 4.4125 13 7 2.1130 -6.1792 3.7034 14 6 2.6124 -6.9132 4.7452 15 1 3.2552 -6.4454 5.4762 16 6 2.2921 -8.2612 4.8624 17 7 1.5107 -8.8304 3.9730 18 14 2.9730 -9.2629 6.2846 19 1 2.0333 -9.1952 7.4323 20 1 3.1359 -10.6768 5.8609 21 1 4.2912 -8.7129 6.6909 22 6 2.2055 -2.7272 2.3445 23 1 -0.3633 0.7618 0.6898 24 1 -0.3633 0.2165 -1.0047 25 1 -0.3633 -0.9783 0.3147 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.8677 -1.7926 -1.1461 30 1 1.5081 -0.3505 -2.1255 31 1 3.1075 -0.5344 -1.3663 32 1 0.4758 -2.0230 -0.4719 33 1 -0.0901 -4.4066 -0.2623 34 1 0.8034 -5.7296 1.6072 35 1 1.5360 -6.5995 3.0467 36 1 1.2869 -9.7707 4.0549 37 1 2.8513 -2.2566 3.0711 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874260745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:56 Heat of formation + Delta-G solvation = -59.431885 kcal Electronic energy + Delta-G solvation = -19486.280298 eV Core-core repulsion = 16421.622416 eV Total energy + Delta-G solvation = -3064.657883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.83958 -40.38181 -38.25344 -36.16408 -35.10174 -33.51694 -32.09271 -30.94839 -28.43070 -28.31518 -27.10385 -24.61340 -23.40437 -22.16036 -20.69815 -20.08807 -18.63437 -17.66704 -17.31776 -16.68892 -16.50887 -16.30208 -15.84460 -15.55710 -15.05629 -14.80362 -14.76795 -14.52664 -14.17001 -13.59668 -13.53184 -13.12186 -13.06287 -12.86252 -12.84060 -12.67515 -12.54675 -12.37268 -12.12961 -11.79460 -11.64869 -11.55490 -11.37947 -10.56106 -10.16872 -9.89532 -9.15824 -8.58804 -6.03826 -0.09005 0.45015 1.39028 1.40274 1.53981 2.02878 2.14699 2.28789 2.81823 3.11328 3.26461 3.74471 3.85721 3.88605 3.97885 4.00820 4.17400 4.26525 4.39226 4.58909 4.63055 4.68256 4.77367 4.83156 4.88929 4.93638 5.02785 5.16928 5.21067 5.30773 5.34231 5.38403 5.41086 5.47431 5.71471 5.92002 6.46889 6.53121 6.98718 7.38762 7.96239 8.58409 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048028 B = 0.003960 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.849058 B = 7068.574935 C = 7459.687419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.092 3.908 3 C -0.136 4.136 4 C -0.201 4.201 5 O -0.327 6.327 6 C 0.129 3.871 7 C -0.197 4.197 8 C -0.076 4.076 9 C -0.143 4.143 10 C -0.085 4.085 11 C 0.458 3.542 12 O -0.640 6.640 13 N -0.546 5.546 14 C -0.341 4.341 15 H 0.083 0.917 16 C -0.007 4.007 17 N -0.907 5.907 18 Si 1.001 2.999 19 H -0.267 1.267 20 H -0.264 1.264 21 H -0.272 1.272 22 C -0.134 4.134 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.185 0.815 33 H 0.170 0.830 34 H 0.127 0.873 35 H 0.400 0.600 36 H 0.284 0.716 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.750 13.743 -14.844 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.056 3.944 3 C -0.193 4.193 4 C -0.258 4.258 5 O -0.242 6.242 6 C 0.084 3.916 7 C -0.215 4.215 8 C -0.094 4.094 9 C -0.162 4.162 10 C -0.089 4.089 11 C 0.248 3.752 12 O -0.531 6.531 13 N -0.180 5.180 14 C -0.471 4.471 15 H 0.101 0.899 16 C -0.208 4.208 17 N -0.546 5.546 18 Si 0.823 3.177 19 H -0.192 1.192 20 H -0.189 1.189 21 H -0.197 1.197 22 C -0.155 4.155 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.202 0.798 33 H 0.187 0.813 34 H 0.145 0.855 35 H 0.236 0.764 36 H 0.094 0.906 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.248 13.972 -14.201 20.601 hybrid contribution 0.244 -0.855 0.726 1.148 sum -5.004 13.117 -13.475 19.459 Atomic orbital electron populations 1.22884 0.93620 1.04018 1.04904 1.22229 0.95076 0.93664 0.83461 1.21857 1.01865 0.91571 1.04006 1.22943 1.02732 1.02535 0.97591 1.86158 1.73838 1.19124 1.45085 1.18651 0.94863 0.83788 0.94297 1.22291 1.01210 0.96693 1.01333 1.21297 0.98077 0.93204 0.96817 1.21417 0.98601 1.00741 0.95448 1.19753 0.99559 0.93764 0.95779 1.18499 0.85890 0.82917 0.87888 1.90537 1.43893 1.71842 1.46780 1.41858 1.43200 1.07776 1.25165 1.19820 1.29245 0.92691 1.05298 0.89942 1.26210 0.96324 0.97159 1.01153 1.69636 1.34890 1.14160 1.35933 0.84823 0.78588 0.77168 0.77126 1.19229 1.18859 1.19679 1.20288 1.03272 0.92675 0.99249 0.91641 0.88012 0.90810 0.92200 0.87624 0.92009 0.90466 0.87947 0.92104 0.79820 0.81287 0.85493 0.76427 0.90582 0.87175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.95 8.11 71.98 0.58 -2.37 16 2 C 0.09 1.73 1.11 -10.79 -0.01 1.72 16 3 C -0.14 -2.02 8.73 71.98 0.63 -1.39 16 4 C -0.20 -3.13 8.08 71.98 0.58 -2.55 16 5 O -0.33 -9.53 9.79 -92.55 -0.91 -10.44 16 6 C 0.13 4.15 6.05 22.47 0.14 4.28 16 7 C -0.20 -4.88 5.72 22.43 0.13 -4.75 16 8 C -0.08 -1.97 10.03 22.22 0.22 -1.75 16 9 C -0.14 -5.02 9.54 22.55 0.22 -4.81 16 10 C -0.09 -3.75 5.87 -20.10 -0.12 -3.86 16 11 C 0.46 25.14 7.72 86.76 0.67 25.81 16 12 O -0.64 -40.02 15.92 -3.99 -0.06 -40.08 16 13 N -0.55 -30.20 5.23 -309.72 -1.62 -31.82 16 14 C -0.34 -20.13 9.68 84.10 0.81 -19.32 16 15 H 0.08 5.17 7.15 -2.91 -0.02 5.15 16 16 C -0.01 -0.36 5.50 84.96 0.47 0.11 16 17 N -0.91 -48.64 13.05 21.68 0.28 -48.36 16 18 Si 1.00 42.80 29.55 68.60 2.03 44.83 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 C -0.13 -5.54 9.53 22.64 0.22 -5.32 16 23 H 0.06 1.00 8.01 -2.39 -0.02 0.98 16 24 H 0.10 0.88 7.83 -2.38 -0.02 0.87 16 25 H 0.07 1.28 4.76 -2.39 -0.01 1.27 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.37 4.48 -2.38 -0.01 1.36 16 30 H 0.10 0.94 7.88 -2.39 -0.02 0.92 16 31 H 0.06 1.02 8.09 -2.39 -0.02 1.00 16 32 H 0.19 3.16 3.59 -2.91 -0.01 3.15 16 33 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.13 4.44 6.40 -2.91 -0.02 4.42 16 35 H 0.40 20.62 5.92 -92.71 -0.55 20.07 16 36 H 0.28 14.03 8.31 -92.70 -0.77 13.26 16 37 H 0.11 5.00 7.65 -2.91 -0.02 4.98 16 Total: -1.00 -72.96 303.07 4.80 -68.15 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.55 Total: 31.91 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 4.53 Total: -14.19 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.34 Total: -80.18 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.97 Total: -50.52 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.96 4.80 -68.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874260745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.721 kcal (2) G-P(sol) polarization free energy of solvation -72.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds