Wall clock time and date at job start Sun Mar 29 2020 23:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 H 1.09000 * 109.47140 * 54.99820 * 3 2 1 5 5 N 1.46496 * 109.47278 * 295.00015 * 3 2 1 6 6 C 1.34784 * 119.99989 * 84.99813 * 5 3 2 7 7 O 1.21681 * 119.99704 * 0.02562 * 6 5 3 8 8 C 1.46376 * 119.99752 * 180.02562 * 6 5 3 9 9 H 1.07998 * 120.00434 * 359.97438 * 8 6 5 10 10 C 1.40051 * 119.99764 * 179.97438 * 8 6 5 11 11 N 1.30678 * 119.99921 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00078 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47261 * 59.99970 * 12 10 8 14 14 H 1.48497 * 109.47231 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46749 * 299.99721 * 12 10 8 16 16 C 1.53002 * 109.47415 * 174.99844 * 3 2 1 17 17 H 1.09002 * 109.47070 * 300.00053 * 16 3 2 18 18 O 1.42903 * 109.46923 * 60.00217 * 16 3 2 19 19 C 1.50701 * 109.47419 * 179.97438 * 16 3 2 20 20 C 1.38242 * 119.99675 * 279.73028 * 19 16 3 21 21 C 1.38235 * 119.99458 * 179.81160 * 20 19 16 22 22 C 1.38236 * 120.00304 * 0.38687 * 21 20 19 23 23 C 1.38242 * 119.99796 * 359.86995 * 22 21 20 24 24 C 1.38230 * 119.99958 * 359.94576 * 23 22 21 25 25 H 1.09001 * 109.46931 * 59.99839 * 1 2 3 26 26 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47148 * 299.99765 * 1 2 3 28 28 H 1.08998 * 109.47375 * 239.99781 * 2 1 3 29 29 H 1.09001 * 109.47436 * 119.99582 * 2 1 3 30 30 H 0.97000 * 120.00167 * 265.00274 * 5 3 2 31 31 H 0.96992 * 119.99799 * 179.97438 * 11 10 8 32 32 H 0.96700 * 114.00234 * 59.99815 * 18 16 3 33 33 H 1.07997 * 120.00052 * 359.97438 * 20 19 16 34 34 H 1.08000 * 119.99878 * 180.22948 * 21 20 19 35 35 H 1.08004 * 120.00024 * 179.83199 * 22 21 20 36 36 H 1.08000 * 119.99869 * 179.97438 * 23 22 21 37 37 H 1.07999 * 119.99817 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3669 7 8 -0.3418 2.6326 -0.4310 8 6 0.0477 3.3184 -2.6179 9 1 0.7375 3.3470 -3.4484 10 6 -1.2174 3.9070 -2.7377 11 7 -2.0518 3.8729 -1.7326 12 14 -1.7121 4.7410 -4.3343 13 1 -1.6695 3.7534 -5.4425 14 1 -3.0892 5.2811 -4.2046 15 1 -0.7705 5.8520 -4.6248 16 6 3.5648 1.4443 0.1258 17 1 3.8532 0.9570 1.0572 18 8 4.1346 0.7377 -0.9779 19 6 4.0673 2.8651 0.1251 20 6 4.2046 3.5491 -1.0684 21 6 4.6618 4.8537 -1.0686 22 6 4.9892 5.4716 0.1239 23 6 4.8568 4.7858 1.3169 24 6 4.3961 3.4825 1.3174 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.2719 2.1231 -1.9978 31 1 -2.9278 4.2808 -1.8155 32 1 3.9190 1.1165 -1.8411 33 1 3.9523 3.0651 -2.0002 34 1 4.7656 5.3893 -2.0006 35 1 5.3489 6.4899 0.1234 36 1 5.1130 5.2684 2.2484 37 1 4.2923 2.9469 2.2495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874754888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:41 Heat of formation + Delta-G solvation = -71.432920 kcal Electronic energy + Delta-G solvation = -20387.103207 eV Core-core repulsion = 17321.924921 eV Total energy + Delta-G solvation = -3065.178286 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.78657 -37.88136 -36.37708 -33.80728 -32.35303 -31.37065 -31.10467 -30.49332 -27.58040 -26.00658 -23.53716 -22.42945 -20.94917 -20.80153 -19.25030 -17.85491 -17.04918 -15.86705 -15.67370 -15.34095 -14.89443 -14.51557 -14.00037 -13.87240 -13.58156 -13.38517 -13.10845 -12.66640 -12.46332 -11.93887 -11.76124 -11.56359 -11.23718 -11.15515 -11.02778 -10.88158 -10.83164 -10.53359 -10.45250 -10.16777 -10.00440 -9.69044 -8.84760 -8.70265 -8.48614 -7.60017 -7.43465 -6.18494 -4.64056 1.54337 1.62160 3.14246 3.19739 3.20856 3.94804 4.09172 4.55247 4.59853 4.74183 4.88834 5.01477 5.16483 5.25687 5.31096 5.61358 5.63632 5.72969 5.83132 5.90615 5.98026 6.15095 6.19169 6.24410 6.45470 6.59018 6.63225 6.68097 6.69947 6.78274 6.98389 7.18764 7.38922 7.42696 7.68083 7.89066 8.09078 8.30251 9.02408 9.50603 10.60039 10.79439 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.007448 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.039564 B = 3758.564228 C = 4749.715492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.129 3.871 4 H 0.084 0.916 5 N -0.757 5.757 6 C 0.561 3.439 7 O -0.570 6.570 8 C -0.546 4.546 9 H 0.064 0.936 10 C 0.090 3.910 11 N -0.767 5.767 12 Si 0.904 3.096 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.269 1.269 16 C 0.139 3.861 17 H 0.109 0.891 18 O -0.554 6.554 19 C -0.103 4.103 20 C -0.094 4.094 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.113 4.113 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.371 0.629 31 H 0.268 0.732 32 H 0.371 0.629 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.205 -0.847 1.941 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.102 0.898 5 N -0.414 5.414 6 C 0.365 3.635 7 O -0.452 6.452 8 C -0.583 4.583 9 H 0.082 0.918 10 C -0.130 4.130 11 N -0.395 5.395 12 Si 0.729 3.271 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.194 1.194 16 C 0.080 3.920 17 H 0.126 0.874 18 O -0.360 6.360 19 C -0.103 4.103 20 C -0.112 4.112 21 C -0.133 4.133 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.131 4.131 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.203 0.797 31 H 0.079 0.921 32 H 0.220 0.780 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.659 -1.193 3.204 12.150 hybrid contribution -0.263 0.938 -1.567 1.846 sum 11.396 -0.255 1.636 11.515 Atomic orbital electron populations 1.21774 0.94531 0.98878 1.04513 1.21818 0.97268 0.96246 1.00699 1.21234 0.91383 0.93616 0.91537 0.89824 1.46187 1.18957 1.62866 1.13393 1.18059 0.78816 0.77647 0.89010 1.90610 1.50843 1.62477 1.41315 1.20820 1.00645 1.38255 0.98628 0.91805 1.25656 0.95996 0.94562 0.96801 1.69999 1.05972 1.33753 1.29809 0.86500 0.77990 0.79956 0.82698 1.19344 1.20618 1.19386 1.21252 0.92435 0.87686 0.90673 0.87365 1.86557 1.76161 1.56440 1.16809 1.20472 0.98788 0.97156 0.93884 1.20820 0.98257 0.94773 0.97390 1.21087 0.99131 0.94962 0.98131 1.21092 1.00813 0.99598 0.92785 1.21046 1.00348 0.94724 0.97909 1.20918 0.99505 0.95402 0.97285 0.90600 0.95307 0.92745 0.92274 0.93126 0.79704 0.92143 0.78034 0.86464 0.86135 0.86466 0.86389 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.12 -2.15 5.39 -26.73 -0.14 -2.29 16 3 C 0.13 2.37 2.08 -67.93 -0.14 2.23 16 4 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 5 N -0.76 -15.66 4.13 -55.22 -0.23 -15.89 16 6 C 0.56 14.95 6.31 -12.98 -0.08 14.87 16 7 O -0.57 -17.21 12.15 5.21 0.06 -17.14 16 8 C -0.55 -14.87 9.54 -35.63 -0.34 -15.21 16 9 H 0.06 1.59 7.85 -52.49 -0.41 1.18 16 10 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 11 N -0.77 -22.49 11.83 55.55 0.66 -21.83 16 12 Si 0.90 19.91 29.56 -169.99 -5.02 14.89 16 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 14 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 C 0.14 2.09 3.09 -27.88 -0.09 2.00 16 17 H 0.11 1.47 8.01 -51.93 -0.42 1.05 16 18 O -0.55 -8.04 12.60 -35.23 -0.44 -8.48 16 19 C -0.10 -1.57 4.88 -104.62 -0.51 -2.08 16 20 C -0.09 -1.42 8.32 -39.58 -0.33 -1.75 16 21 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 22 C -0.12 -1.67 10.05 -39.58 -0.40 -2.06 16 23 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 24 C -0.11 -1.61 9.67 -39.59 -0.38 -1.99 16 25 H 0.08 1.87 5.64 -51.93 -0.29 1.58 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 28 H 0.06 1.02 7.84 -51.93 -0.41 0.62 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.37 6.73 5.45 -40.82 -0.22 6.51 16 31 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 32 H 0.37 4.71 6.11 45.56 0.28 4.99 16 33 H 0.12 1.61 5.50 -52.49 -0.29 1.32 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.45 8.04 -52.49 -0.42 1.03 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -32.73 303.64 -7.62 -40.35 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -4.23 Total: 14.10 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.99 Total: -10.56 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.43 Total: -37.72 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.38 Total: -25.63 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.73 -7.62 -40.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874754888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.081 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds