Wall clock time and date at job start Mon Mar 30 2020 00:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.46816 * 2 1 4 4 O 1.20824 * 120.00342 * 359.97438 * 3 2 1 5 5 O 1.34266 * 119.99764 * 179.97438 * 3 2 1 6 6 C 1.35934 * 116.99877 * 185.26123 * 5 3 2 7 7 C 1.38722 * 120.05586 * 255.47793 * 6 5 3 8 8 C 1.38147 * 119.94152 * 180.02562 * 7 6 5 9 9 C 1.38259 * 120.05648 * 0.02938 * 8 7 6 10 10 C 1.50707 * 119.94880 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47079 * 89.99843 * 10 9 8 12 12 C 1.46499 * 120.00320 * 90.00126 * 11 10 9 13 13 C 1.36941 * 119.99578 * 270.00492 * 11 10 9 14 14 H 1.07996 * 120.00595 * 334.58768 * 13 11 10 15 15 C 1.38822 * 119.99735 * 154.59489 * 13 11 10 16 16 N 1.31618 * 119.99847 * 3.87739 * 15 13 11 17 17 Si 1.86800 * 119.99923 * 183.87726 * 15 13 11 18 18 H 1.48502 * 109.47075 * 84.99614 * 17 15 13 19 19 H 1.48498 * 109.47232 * 204.99658 * 17 15 13 20 20 H 1.48502 * 109.46854 * 324.99795 * 17 15 13 21 21 C 1.38275 * 120.11242 * 0.24407 * 9 8 7 22 22 C 1.38141 * 120.05140 * 359.45583 * 21 9 8 23 23 H 1.08998 * 109.47094 * 60.00650 * 1 2 3 24 24 H 1.09005 * 109.46484 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47425 * 299.99991 * 1 2 3 26 26 H 1.08997 * 109.47425 * 240.00009 * 2 1 3 27 27 H 1.09008 * 109.46931 * 119.99869 * 2 1 3 28 28 H 1.07997 * 120.03347 * 0.02562 * 7 6 5 29 29 H 1.08003 * 119.97287 * 179.97438 * 8 7 6 30 30 H 1.09000 * 109.46631 * 329.99988 * 10 9 8 31 31 H 1.08995 * 109.47182 * 209.99906 * 10 9 8 32 32 H 1.08996 * 109.47098 * 264.45142 * 12 11 10 33 33 H 1.08997 * 109.46864 * 24.45434 * 12 11 10 34 34 H 1.08997 * 109.47098 * 144.44822 * 12 11 10 35 35 H 0.97000 * 119.99570 * 180.02562 * 16 15 13 36 36 H 1.07998 * 119.97349 * 179.70497 * 21 9 8 37 37 H 1.07999 * 120.02908 * 180.24814 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2471 2.3392 -0.0005 5 8 3.3523 1.6662 0.0005 6 6 3.7386 2.9647 0.1116 7 6 4.2056 3.6483 -1.0016 8 6 4.5981 4.9678 -0.8859 9 6 4.5262 5.6069 0.3380 10 6 4.9555 7.0462 0.4615 11 7 3.8073 7.9213 0.2124 12 6 2.9488 8.3377 1.3241 13 6 3.5365 8.3501 -1.0596 14 1 4.3302 8.4110 -1.7895 15 6 2.2417 8.7066 -1.4110 16 7 1.2894 8.7057 -0.5024 17 14 1.8510 9.1876 -3.1732 18 1 1.5790 7.9651 -3.9713 19 1 0.6550 10.0676 -3.1926 20 1 3.0084 9.9123 -3.7567 21 6 4.0663 4.9261 1.4502 22 6 3.6669 3.6084 1.3385 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 4.2624 3.1494 -1.9577 29 1 4.9622 5.5003 -1.7521 30 1 5.7373 7.2560 -0.2684 31 1 5.3384 7.2263 1.4660 32 1 2.0872 7.6731 1.3864 33 1 3.5124 8.2903 2.2558 34 1 2.6082 9.3595 1.1572 35 1 0.3846 8.9545 -0.7481 36 1 4.0156 5.4261 2.4061 37 1 3.3040 3.0782 2.2065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138966579.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:51 Heat of formation + Delta-G solvation = -48.977553 kcal Electronic energy + Delta-G solvation = -19611.286107 eV Core-core repulsion = 16547.081558 eV Total energy + Delta-G solvation = -3064.204549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.31960 -39.98901 -38.23718 -37.03420 -34.03256 -33.57067 -31.99017 -31.39264 -28.05888 -27.61627 -25.99674 -23.88633 -23.60868 -22.34203 -21.38943 -19.31306 -18.79381 -18.18154 -17.74739 -17.11937 -16.43050 -16.15441 -15.59056 -15.48460 -15.08285 -14.75778 -14.58162 -14.42129 -14.13510 -13.52766 -13.35235 -13.15548 -12.96193 -12.81147 -12.73614 -12.55157 -12.45767 -12.15852 -12.14067 -12.03060 -11.86468 -11.71629 -11.57200 -10.64417 -9.93219 -9.53950 -8.80140 -7.86751 -5.33841 0.11886 0.41515 1.06987 1.42496 1.45027 1.52231 1.78370 2.47224 2.79828 3.32095 3.59411 3.84809 3.88830 3.92659 4.08796 4.14178 4.16456 4.42655 4.46971 4.52552 4.70622 4.81223 4.86337 4.93032 4.94996 4.98798 5.08371 5.25056 5.29430 5.32066 5.40680 5.52051 5.62007 5.76064 5.77201 5.99312 6.32141 6.76834 7.14103 7.83766 8.28217 9.16952 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019521 B = 0.005527 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.026080 B = 5064.464686 C = 5683.621187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C 0.442 3.558 4 O -0.535 6.535 5 O -0.292 6.292 6 C 0.050 3.950 7 C -0.128 4.128 8 C -0.101 4.101 9 C -0.090 4.090 10 C 0.179 3.821 11 N -0.611 5.611 12 C 0.182 3.818 13 C -0.259 4.259 14 H 0.078 0.922 15 C -0.050 4.050 16 N -0.938 5.938 17 Si 0.963 3.037 18 H -0.290 1.290 19 H -0.295 1.295 20 H -0.262 1.262 21 C -0.107 4.107 22 C -0.132 4.132 23 H 0.045 0.955 24 H 0.105 0.895 25 H 0.047 0.953 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.066 0.934 31 H 0.073 0.927 32 H -0.008 1.008 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.246 0.754 36 H 0.135 0.865 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 -17.715 2.486 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C 0.288 3.712 4 O -0.422 6.422 5 O -0.208 6.208 6 C 0.009 3.991 7 C -0.146 4.146 8 C -0.120 4.120 9 C -0.093 4.093 10 C 0.054 3.946 11 N -0.332 5.332 12 C 0.037 3.963 13 C -0.389 4.389 14 H 0.096 0.904 15 C -0.245 4.245 16 N -0.585 5.585 17 Si 0.791 3.209 18 H -0.217 1.217 19 H -0.222 1.222 20 H -0.186 1.186 21 C -0.126 4.126 22 C -0.150 4.150 23 H 0.064 0.936 24 H 0.123 0.877 25 H 0.066 0.934 26 H 0.153 0.847 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.149 0.851 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.010 0.990 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.153 0.847 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.614 -17.302 2.471 18.076 hybrid contribution -0.838 0.658 -0.891 1.389 sum 3.776 -16.644 1.580 17.140 Atomic orbital electron populations 1.21698 0.92425 1.03933 1.02123 1.21606 0.97597 0.86088 1.08639 1.25568 0.79572 0.94994 0.71041 1.90759 1.56897 1.48869 1.45705 1.84601 1.26963 1.25907 1.83292 1.18553 1.02818 0.83498 0.94258 1.21259 1.00941 0.94586 0.97845 1.21041 0.99748 0.93329 0.97881 1.21284 0.97073 0.97656 0.93301 1.20138 0.89607 0.84155 1.00748 1.44235 1.31737 1.52521 1.04756 1.20591 0.91321 0.97673 0.86735 1.19562 0.92524 1.37507 0.89276 0.90429 1.25935 0.95843 1.01759 1.00968 1.70272 1.01177 1.53847 1.33198 0.85342 0.77641 0.77283 0.80630 1.21705 1.22155 1.18623 1.21036 0.98805 0.93381 0.99339 1.21328 1.01086 0.95603 0.96981 0.93611 0.87653 0.93351 0.84663 0.84411 0.84204 0.85128 0.91599 0.90872 0.98958 0.95314 0.95460 0.94473 0.84721 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.20 71.98 0.66 -1.69 16 2 C -0.10 -1.56 6.53 29.85 0.19 -1.37 16 3 C 0.44 12.68 7.80 71.23 0.56 13.23 16 4 O -0.53 -21.01 15.59 21.97 0.34 -20.67 16 5 O -0.29 -8.80 10.03 4.41 0.04 -8.75 16 6 C 0.05 1.77 5.09 22.50 0.11 1.89 16 7 C -0.13 -4.57 9.99 22.36 0.22 -4.35 16 8 C -0.10 -3.87 9.69 22.25 0.22 -3.65 16 9 C -0.09 -3.55 5.46 -19.85 -0.11 -3.66 16 10 C 0.18 7.20 5.83 85.64 0.50 7.70 16 11 N -0.61 -31.00 2.91 -731.32 -2.13 -33.13 16 12 C 0.18 9.31 8.99 127.77 1.15 10.46 16 13 C -0.26 -14.29 9.67 84.04 0.81 -13.47 16 14 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 15 C -0.05 -2.89 5.38 84.86 0.46 -2.43 16 16 N -0.94 -57.70 10.13 21.65 0.22 -57.48 16 17 Si 0.96 46.30 29.56 68.60 2.03 48.32 16 18 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 19 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 20 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 21 C -0.11 -3.93 9.69 22.26 0.22 -3.72 16 22 C -0.13 -4.63 9.68 22.37 0.22 -4.41 16 23 H 0.04 0.92 8.10 -2.39 -0.02 0.90 16 24 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 26 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 29 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 30 H 0.07 2.48 7.98 -2.39 -0.02 2.46 16 31 H 0.07 2.56 7.80 -2.39 -0.02 2.54 16 32 H -0.01 -0.46 7.43 -2.39 -0.02 -0.48 16 33 H 0.03 1.23 7.83 -2.39 -0.02 1.21 16 34 H 0.03 1.51 7.04 -2.39 -0.02 1.49 16 35 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 36 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -73.65 319.62 6.75 -66.89 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.05 Total: 10.28 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.21 Total: -5.47 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -1.91 Total: -90.61 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: 0.39 Total: -29.42 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -73.65 6.75 -66.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138966579.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.914 kcal (2) G-P(sol) polarization free energy of solvation -73.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds