Wall clock time and date at job start Mon Mar 30 2020 00:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 O 1.42905 * 109.46728 * 184.99974 * 3 2 1 5 5 N 1.46496 * 109.47067 * 239.99594 * 2 1 3 6 6 C 1.34780 * 120.00152 * 60.00415 * 5 2 1 7 7 O 1.21279 * 119.99763 * 359.97438 * 6 5 2 8 8 C 1.50695 * 120.00038 * 179.97438 * 6 5 2 9 9 C 1.50707 * 109.46993 * 179.97438 * 8 6 5 10 10 H 1.07997 * 119.99802 * 0.02562 * 9 8 6 11 11 C 1.37875 * 119.99615 * 179.97438 * 9 8 6 12 12 N 1.31516 * 119.99492 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 120.00564 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47214 * 89.99922 * 13 11 9 15 15 H 1.48501 * 109.47306 * 210.00458 * 13 11 9 16 16 H 1.48504 * 109.46990 * 330.00188 * 13 11 9 17 17 C 1.50704 * 109.46522 * 119.99779 * 2 1 3 18 18 C 1.38233 * 119.99790 * 269.72056 * 17 2 1 19 19 C 1.38232 * 119.99791 * 179.79159 * 18 17 2 20 20 C 1.38241 * 120.00173 * 0.44560 * 19 18 17 21 21 C 1.38243 * 119.99549 * 359.80909 * 20 19 18 22 22 C 1.38230 * 120.00013 * 359.97438 * 21 20 19 23 23 H 1.09000 * 109.46883 * 59.99966 * 1 2 3 24 24 H 1.09001 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47145 * 300.00897 * 1 2 3 26 26 H 1.09000 * 109.47486 * 64.99912 * 3 2 1 27 27 H 1.09001 * 109.47362 * 304.99190 * 3 2 1 28 28 H 0.96696 * 114.00036 * 179.97438 * 4 3 2 29 29 H 0.96998 * 120.00212 * 240.00387 * 5 2 1 30 30 H 1.09000 * 109.47118 * 299.99908 * 8 6 5 31 31 H 1.09001 * 109.47516 * 60.00156 * 8 6 5 32 32 H 0.97004 * 119.99762 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.00090 * 0.02562 * 18 17 2 34 34 H 1.08001 * 120.00533 * 180.28173 * 19 18 17 35 35 H 1.08000 * 120.00351 * 179.83621 * 20 19 18 36 36 H 1.07994 * 119.99590 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.00092 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4642 1.4441 -0.1174 5 7 2.0183 -0.6907 -1.1961 6 6 1.6928 -0.2303 -2.4203 7 8 0.9952 0.7556 -2.5316 8 6 2.1956 -0.9404 -3.6506 9 6 1.6927 -0.2304 -4.8812 10 1 1.0715 0.6474 -4.7821 11 6 2.0266 -0.7011 -6.1334 12 7 1.5881 -0.0812 -7.2072 13 14 3.1015 -2.2191 -6.3047 14 1 2.2438 -3.4305 -6.3506 15 1 3.8939 -2.1258 -7.5572 16 1 4.0216 -2.3079 -5.1424 17 6 2.0322 -0.7104 1.2306 18 6 2.2680 0.0016 2.3917 19 6 2.7246 -0.6508 3.5217 20 6 2.9541 -2.0136 3.4879 21 6 2.7233 -2.7246 2.3251 22 6 2.2625 -2.0730 1.1964 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.7517 1.9299 0.9314 27 1 1.6055 1.9815 -0.8419 28 1 3.8573 2.3276 -0.1245 29 1 2.5760 -1.4794 -1.1071 30 1 3.2856 -0.9400 -3.6504 31 1 1.8326 -1.9682 -3.6508 32 1 1.8227 -0.4126 -8.0882 33 1 2.0920 1.0668 2.4172 34 1 2.9045 -0.0954 4.4304 35 1 3.3133 -2.5228 4.3700 36 1 2.9022 -3.7893 2.2987 37 1 2.0825 -2.6285 0.2878 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:12 Heat of formation + Delta-G solvation = -55.787070 kcal Electronic energy + Delta-G solvation = -20010.265320 eV Core-core repulsion = 16945.765488 eV Total energy + Delta-G solvation = -3064.499832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31441 -38.52283 -36.60071 -34.74352 -32.81513 -31.78429 -30.88377 -29.83049 -28.88048 -26.02412 -23.97166 -22.83542 -22.34740 -20.18681 -19.09660 -17.59741 -17.16307 -16.79907 -15.93296 -15.49078 -15.02476 -14.64033 -14.46153 -14.15496 -13.90596 -13.70941 -13.35484 -13.01655 -12.80257 -12.32123 -12.20333 -12.09583 -12.01507 -11.65206 -11.37342 -11.13746 -10.77510 -10.61279 -10.46616 -9.94934 -9.81342 -9.23028 -8.99412 -8.90038 -8.56965 -8.55504 -8.40727 -6.00512 -3.99493 1.27534 1.32791 3.28676 3.36496 3.37181 3.60046 3.68395 3.83049 4.35281 4.43734 4.53669 4.81339 4.89086 5.01180 5.22953 5.31085 5.32997 5.43368 5.51711 5.57292 5.74948 5.86503 5.92426 5.93377 6.06996 6.19184 6.37466 6.42059 6.46785 6.49997 6.67464 6.90651 6.97464 7.07221 7.58888 7.80094 8.20202 8.59978 9.15235 9.21637 9.58660 11.12515 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.005199 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.147858 B = 5384.196364 C = 5870.823505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.221 3.779 3 C 0.063 3.937 4 O -0.561 6.561 5 N -0.732 5.732 6 C 0.530 3.470 7 O -0.533 6.533 8 C -0.030 4.030 9 C -0.508 4.508 10 H 0.092 0.908 11 C 0.068 3.932 12 N -0.899 5.899 13 Si 0.874 3.126 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.266 1.266 17 C -0.066 4.066 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.116 4.116 23 H 0.090 0.910 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.374 0.626 29 H 0.395 0.605 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.263 0.737 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.760 -2.867 21.902 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.134 3.866 3 C -0.015 4.015 4 O -0.365 6.365 5 N -0.387 5.387 6 C 0.319 3.681 7 O -0.409 6.409 8 C -0.070 4.070 9 C -0.547 4.547 10 H 0.110 0.890 11 C -0.133 4.133 12 N -0.537 5.537 13 Si 0.701 3.299 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.191 1.191 17 C -0.067 4.067 18 C -0.124 4.124 19 C -0.137 4.137 20 C -0.145 4.145 21 C -0.135 4.135 22 C -0.134 4.134 23 H 0.108 0.892 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.219 0.781 29 H 0.230 0.770 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.149 -2.794 21.572 21.858 hybrid contribution 1.004 -0.648 -0.101 1.200 sum 3.153 -3.442 21.471 21.972 Atomic orbital electron populations 1.22178 0.92708 1.03057 1.03741 1.19044 0.93870 0.90477 0.83243 1.22686 0.81868 0.96416 1.00554 1.86501 1.19731 1.33062 1.97239 1.46334 1.55172 1.32389 1.04795 1.21279 0.78658 0.84290 0.83853 1.90491 1.37532 1.26394 1.86452 1.19683 0.98075 0.96948 0.92300 1.20987 1.32102 1.14084 0.87498 0.88973 1.24970 0.95773 0.96791 0.95790 1.69898 1.45655 1.40374 0.97819 0.86898 0.81235 0.83911 0.77894 1.20191 1.21170 1.19111 1.19829 0.98403 0.93851 0.94605 1.20993 0.99213 0.99768 0.92425 1.21094 0.99816 0.94721 0.98106 1.21123 1.00823 0.94482 0.98068 1.21107 0.99464 0.99846 0.93055 1.20998 0.99710 0.94029 0.98703 0.89162 0.91911 0.92153 0.93713 0.90650 0.78052 0.77028 0.93632 0.94240 0.92666 0.85983 0.86205 0.86324 0.86065 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.38 37.16 0.31 -2.00 16 2 C 0.22 3.31 0.68 -132.97 -0.09 3.22 16 3 C 0.06 0.94 5.13 37.16 0.19 1.13 16 4 O -0.56 -8.34 13.10 -35.23 -0.46 -8.81 16 5 N -0.73 -12.61 4.62 -48.68 -0.23 -12.84 16 6 C 0.53 11.64 7.24 -10.99 -0.08 11.56 16 7 O -0.53 -13.17 11.72 5.56 0.07 -13.10 16 8 C -0.03 -0.73 4.53 -29.03 -0.13 -0.86 16 9 C -0.51 -14.97 9.48 -34.44 -0.33 -15.29 16 10 H 0.09 3.06 7.00 -52.49 -0.37 2.69 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -28.10 13.96 55.43 0.77 -27.32 16 13 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 17 C -0.07 -0.87 4.60 -104.62 -0.48 -1.35 16 18 C -0.11 -1.22 9.07 -39.59 -0.36 -1.58 16 19 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 20 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 21 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 22 C -0.12 -1.41 8.96 -39.59 -0.35 -1.76 16 23 H 0.09 1.57 6.17 -51.93 -0.32 1.25 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.53 6.21 -51.93 -0.32 0.21 16 27 H 0.08 1.32 6.32 -51.93 -0.33 0.99 16 28 H 0.37 3.98 9.12 45.56 0.42 4.39 16 29 H 0.39 6.06 6.67 -40.82 -0.27 5.79 16 30 H 0.05 1.07 7.20 -51.93 -0.37 0.69 16 31 H 0.04 0.89 7.57 -51.93 -0.39 0.49 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 33 H 0.12 1.26 6.04 -52.49 -0.32 0.94 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.42 6.71 -52.49 -0.35 1.07 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -34.64 303.09 -6.47 -41.11 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -3.91 Total: 9.75 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.61 Total: -9.92 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.55 Total: -40.16 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.40 Total: -21.91 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.64 -6.47 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.676 kcal (2) G-P(sol) polarization free energy of solvation -34.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds