Wall clock time and date at job start Sun Mar 29 2020 23:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 N 1.46504 * 109.47192 * 179.97438 * 3 2 1 5 5 C 1.39144 * 120.00139 * 179.97438 * 4 3 2 6 6 C 1.39426 * 119.50110 * 0.02562 * 5 4 3 7 7 C 1.37791 * 121.19774 * 179.97438 * 6 5 4 8 8 C 1.39574 * 120.14425 * 0.02562 * 7 6 5 9 9 C 1.47011 * 120.49009 * 179.97438 * 8 7 6 10 10 O 1.21565 * 119.99971 * 174.65518 * 9 8 7 11 11 O 1.34840 * 119.99926 * 354.66102 * 9 8 7 12 12 C 1.45196 * 117.00145 * 179.97438 * 11 9 8 13 13 C 1.46545 * 119.02220 * 359.97438 * 8 7 6 14 14 C 1.40947 * 120.56297 * 179.97438 * 13 8 7 15 15 H 1.08003 * 119.99656 * 324.47141 * 14 13 8 16 16 C 1.40244 * 119.99995 * 144.75507 * 14 13 8 17 17 N 1.30637 * 120.00009 * 168.82521 * 16 14 13 18 18 Si 1.86798 * 120.00162 * 348.82630 * 16 14 13 19 19 H 1.48501 * 109.47333 * 86.36801 * 18 16 14 20 20 H 1.48499 * 109.47068 * 206.36925 * 18 16 14 21 21 H 1.48504 * 109.46869 * 326.37145 * 18 16 14 22 22 C 1.38441 * 119.50438 * 180.25543 * 5 4 3 23 23 H 1.08999 * 109.47248 * 300.00259 * 1 2 3 24 24 H 1.09000 * 109.47300 * 60.00115 * 1 2 3 25 25 H 1.09004 * 109.47530 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47097 * 239.99835 * 2 1 3 27 27 H 1.09000 * 109.47141 * 120.00655 * 2 1 3 28 28 H 1.08996 * 109.47264 * 60.00225 * 3 2 1 29 29 H 1.09000 * 109.47406 * 299.99625 * 3 2 1 30 30 H 0.96998 * 119.99666 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.39427 * 359.97179 * 6 5 4 32 32 H 1.08006 * 119.93083 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.46701 * 60.00019 * 12 11 9 34 34 H 1.09001 * 109.47452 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.46894 * 300.00233 * 12 11 9 36 36 H 0.96997 * 120.00279 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.11297 * 0.03171 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2008 2.6474 0.0002 6 6 3.4933 3.8488 -0.0003 7 6 4.1466 5.0619 -0.0002 8 6 5.5417 5.1067 -0.0001 9 6 6.2465 6.3968 -0.0006 10 8 7.4578 6.4276 0.0975 11 8 5.5495 7.5459 -0.1097 12 6 6.3110 8.7821 -0.1025 13 6 6.2934 3.8487 0.0004 14 6 7.7028 3.8561 -0.0001 15 1 8.2386 4.6197 -0.5443 16 6 8.4094 2.8682 0.7011 17 7 9.6978 2.7395 0.5279 18 14 7.5083 1.7365 1.8828 19 1 6.9630 0.5742 1.1365 20 1 8.4512 1.2572 2.9252 21 1 6.3943 2.4783 2.5262 22 6 5.5852 2.6354 -0.0046 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8900 30 1 3.9900 0.6023 0.0006 31 1 2.4135 3.8280 -0.0008 32 1 3.5781 5.9802 -0.0010 33 1 7.0101 8.7830 -0.9389 34 1 5.6308 9.6285 -0.1971 35 1 6.8640 8.8627 0.8333 36 1 10.1866 2.0566 1.0131 37 1 6.1189 1.6965 -0.0085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168137602.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:48 Heat of formation + Delta-G solvation = -74.772815 kcal Electronic energy + Delta-G solvation = -19557.884116 eV Core-core repulsion = 16492.561001 eV Total energy + Delta-G solvation = -3065.323115 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.21000 -38.06906 -35.93133 -35.05512 -33.68727 -32.60886 -30.49237 -28.86217 -27.14022 -25.59749 -24.84317 -22.28333 -21.63790 -20.84183 -19.35788 -17.46882 -16.77724 -16.25992 -15.71851 -15.42724 -15.29612 -15.10716 -14.62976 -13.81637 -13.41886 -13.11749 -13.03681 -12.76511 -12.46836 -12.38018 -12.05682 -11.92221 -11.61628 -11.42566 -11.15002 -11.13213 -10.91393 -10.78300 -10.57434 -10.19570 -9.89949 -9.75314 -9.27962 -9.04821 -8.85924 -7.65938 -6.97266 -6.60579 -4.55862 2.16849 2.68210 3.08119 3.16954 3.31061 3.78691 3.88962 3.96689 3.97684 4.58097 4.86756 4.92054 5.19839 5.37911 5.58869 5.59477 5.64116 5.68654 5.72744 5.87723 5.89333 5.93897 6.11776 6.12311 6.16528 6.34797 6.55966 6.61898 6.98147 7.03368 7.31083 7.32203 7.53091 7.64274 7.83378 8.21410 8.30374 8.41689 8.66111 8.80160 9.14585 10.01438 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.007184 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.083517 B = 3896.535204 C = 5554.979494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.129 3.871 4 N -0.757 5.757 5 C 0.271 3.729 6 C -0.314 4.314 7 C 0.018 3.982 8 C -0.278 4.278 9 C 0.503 3.497 10 O -0.513 6.513 11 O -0.377 6.377 12 C 0.041 3.959 13 C 0.157 3.843 14 C -0.395 4.395 15 H 0.115 0.885 16 C 0.080 3.920 17 N -0.790 5.790 18 Si 0.922 3.078 19 H -0.269 1.269 20 H -0.293 1.293 21 H -0.245 1.245 22 C -0.319 4.319 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.392 0.608 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.288 0.712 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 -2.098 0.315 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C 0.004 3.996 4 N -0.387 5.387 5 C 0.168 3.832 6 C -0.336 4.336 7 C -0.001 4.001 8 C -0.282 4.282 9 C 0.353 3.647 10 O -0.403 6.403 11 O -0.296 6.296 12 C -0.054 4.054 13 C 0.152 3.848 14 C -0.421 4.421 15 H 0.133 0.867 16 C -0.141 4.141 17 N -0.413 5.413 18 Si 0.749 3.251 19 H -0.195 1.195 20 H -0.220 1.220 21 H -0.169 1.169 22 C -0.343 4.343 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.225 0.775 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.066 -2.079 0.372 12.249 hybrid contribution 0.113 -0.715 0.492 0.875 sum -11.953 -2.793 0.864 12.305 Atomic orbital electron populations 1.21671 0.95001 1.01729 1.02133 1.21722 0.96439 0.96837 1.02478 1.21231 0.81326 0.96104 1.00900 1.44602 1.04622 1.05974 1.83530 1.17630 0.90813 0.85124 0.89585 1.19800 0.97528 0.91011 1.25285 1.20712 0.92959 0.96227 0.90192 1.19557 0.92118 0.88661 1.27844 1.21217 0.86088 0.83612 0.73776 1.90800 1.14940 1.87087 1.47504 1.86576 1.41944 1.15207 1.85832 1.22958 0.96478 0.84119 1.01803 1.18167 0.92731 0.88356 0.85574 1.19989 0.90040 1.08775 1.23333 0.86691 1.26377 0.94978 0.95776 0.96970 1.69573 1.08896 1.28659 1.34194 0.86201 0.79652 0.79980 0.79311 1.19511 1.22029 1.16862 1.20481 0.91198 0.97604 1.24996 0.92496 0.92466 0.92575 0.91564 0.91624 0.92746 0.92677 0.77456 0.88276 0.87376 0.92795 0.89514 0.92802 0.90123 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.14 -1.40 6.05 -26.73 -0.16 -1.57 16 3 C 0.13 1.71 4.87 -4.04 -0.02 1.69 16 4 N -0.76 -12.71 5.71 -58.77 -0.34 -13.04 16 5 C 0.27 5.67 6.63 -84.02 -0.56 5.11 16 6 C -0.31 -6.37 9.24 -39.30 -0.36 -6.74 16 7 C 0.02 0.39 9.60 -39.25 -0.38 0.02 16 8 C -0.28 -6.87 6.07 -102.50 -0.62 -7.50 16 9 C 0.50 12.32 7.86 34.29 0.27 12.59 16 10 O -0.51 -13.98 13.61 -19.31 -0.26 -14.25 16 11 O -0.38 -7.76 9.84 -40.88 -0.40 -8.16 16 12 C 0.04 0.66 10.57 101.05 1.07 1.73 16 13 C 0.16 4.11 5.19 -104.67 -0.54 3.57 16 14 C -0.39 -11.14 8.29 -37.80 -0.31 -11.46 16 15 H 0.12 3.57 6.32 -52.48 -0.33 3.24 16 16 C 0.08 2.14 5.47 -17.31 -0.09 2.05 16 17 N -0.79 -21.35 13.92 55.56 0.77 -20.58 16 18 Si 0.92 21.08 24.57 -169.99 -4.18 16.90 16 19 H -0.27 -5.76 6.43 56.52 0.36 -5.40 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.25 -5.84 7.03 56.52 0.40 -5.44 16 22 C -0.32 -7.55 7.03 -38.66 -0.27 -7.82 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.73 7.90 -51.93 -0.41 0.32 16 29 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 30 H 0.39 6.12 8.46 -40.82 -0.35 5.78 16 31 H 0.10 1.75 6.58 -52.49 -0.35 1.40 16 32 H 0.11 2.05 7.63 -52.48 -0.40 1.65 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.29 6.98 8.29 -40.82 -0.34 6.64 16 37 H 0.11 2.54 4.78 -52.49 -0.25 2.29 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -30.44 307.99 -6.43 -36.87 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.05 Total: 6.83 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.62 Total: -9.21 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.44 Total: -33.63 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.67 Total: -22.40 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.18 Total: 16.90 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.44 -6.43 -36.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168137602.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.904 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds