Wall clock time and date at job start Mon Mar 30 2020 00:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34709 * 116.99855 * 2 1 4 4 O 1.21468 * 120.00316 * 0.02562 * 3 2 1 5 5 C 1.47733 * 119.99568 * 179.97438 * 3 2 1 6 6 C 1.39626 * 120.14512 * 179.97438 * 5 3 2 7 7 C 1.37947 * 119.84448 * 179.70064 * 6 5 3 8 8 C 1.38372 * 120.14939 * 0.26453 * 7 6 5 9 9 C 1.50693 * 119.84555 * 179.97438 * 8 7 6 10 10 C 1.53009 * 109.46897 * 90.00137 * 9 8 7 11 11 H 1.08998 * 109.46967 * 54.99765 * 10 9 8 12 12 C 1.53002 * 109.46981 * 174.99929 * 10 9 8 13 13 N 1.46500 * 109.46885 * 294.99748 * 10 9 8 14 14 C 1.36938 * 119.99383 * 154.99923 * 13 10 9 15 15 H 1.08000 * 120.00548 * 0.02562 * 14 13 10 16 16 C 1.38819 * 119.99480 * 179.97438 * 14 13 10 17 17 N 1.31620 * 119.99940 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00031 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46961 * 90.00095 * 18 16 14 20 20 H 1.48499 * 109.47273 * 209.99827 * 18 16 14 21 21 H 1.48497 * 109.47516 * 330.00016 * 18 16 14 22 22 C 1.38360 * 120.30170 * 0.02562 * 8 7 6 23 23 C 1.37944 * 120.15600 * 0.02562 * 22 8 7 24 24 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47188 * 299.99648 * 1 2 3 26 26 H 1.09001 * 109.47428 * 59.99501 * 1 2 3 27 27 H 1.08002 * 120.08162 * 359.97438 * 6 5 3 28 28 H 1.07999 * 119.92426 * 180.27702 * 7 6 5 29 29 H 1.08998 * 109.47515 * 209.99858 * 9 8 7 30 30 H 1.08999 * 109.47649 * 330.00542 * 9 8 7 31 31 H 1.09000 * 109.46973 * 180.02562 * 12 10 9 32 32 H 1.09004 * 109.46834 * 299.99576 * 12 10 9 33 33 H 1.08998 * 109.47404 * 60.00104 * 12 10 9 34 34 H 0.96991 * 120.00098 * 334.99896 * 13 10 9 35 35 H 0.96999 * 120.00053 * 180.02562 * 17 16 14 36 36 H 1.08003 * 119.92647 * 180.02562 * 22 8 7 37 37 H 1.07997 * 120.07994 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.1760 2.5200 0.0000 7 6 5.5539 2.5849 0.0068 8 6 6.3044 1.4224 0.0086 9 6 7.8093 1.5013 0.0155 10 6 8.3121 1.5260 1.4604 11 1 7.9196 0.6619 1.9965 12 6 9.8414 1.4802 1.4690 13 7 7.8566 2.7549 2.1149 14 6 7.7192 2.7947 3.4768 15 1 7.9470 1.9204 4.0684 16 6 7.2881 3.9594 4.0971 17 7 7.1565 3.9979 5.4061 18 14 6.8947 5.4720 3.0740 19 1 5.4626 5.4456 2.6820 20 1 7.1670 6.6941 3.8723 21 1 7.7417 5.4786 1.8543 22 6 5.6795 0.1880 0.0031 23 6 4.3023 0.1085 -0.0048 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 3.5914 3.4281 -0.0012 28 1 6.0480 3.5452 0.0109 29 1 8.2210 0.6322 -0.4976 30 1 8.1279 2.4097 -0.4956 31 1 10.1996 1.4974 2.4984 32 1 10.1802 0.5658 0.9820 33 1 10.2338 2.3444 0.9330 34 1 7.6523 3.5403 1.5837 35 1 6.8549 4.8116 5.8395 36 1 6.2712 -0.7156 0.0050 37 1 3.8158 -0.8557 -0.0095 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173709280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:13 Heat of formation + Delta-G solvation = -54.442116 kcal Electronic energy + Delta-G solvation = -19495.586113 eV Core-core repulsion = 16431.144603 eV Total energy + Delta-G solvation = -3064.441510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50496 -38.98757 -36.51232 -36.04205 -32.79901 -31.36232 -30.88084 -29.33804 -28.05950 -26.35883 -23.58634 -22.74641 -22.41283 -20.64658 -19.92888 -17.96264 -17.62883 -17.07221 -16.36152 -15.38253 -15.27407 -14.60406 -14.46858 -14.08224 -13.57989 -13.52580 -13.31987 -13.15651 -12.71166 -12.45589 -12.21473 -12.06013 -11.94485 -11.66492 -11.06264 -10.89846 -10.88045 -10.80602 -10.67370 -10.48983 -10.40920 -10.06738 -9.57267 -8.94450 -8.80868 -8.55559 -7.25715 -5.75049 -3.09969 0.84528 1.56398 2.62563 2.67752 3.36424 3.39343 3.46259 3.94059 4.60354 4.72342 4.90732 4.97814 5.03516 5.05673 5.10526 5.21544 5.37019 5.51962 5.53283 5.59807 5.60339 5.83346 5.87007 6.05572 6.15199 6.17436 6.20995 6.30254 6.40275 6.41440 6.54992 6.69210 6.83590 6.96470 7.05096 7.75197 8.00821 8.43811 9.22246 9.94798 10.14044 11.43612 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018141 B = 0.005976 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.079356 B = 4684.249013 C = 5573.024208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.512 3.488 4 O -0.511 6.511 5 C -0.143 4.143 6 C -0.048 4.048 7 C -0.115 4.115 8 C -0.017 4.017 9 C -0.099 4.099 10 C 0.182 3.818 11 H 0.058 0.942 12 C -0.165 4.165 13 N -0.746 5.746 14 C -0.239 4.239 15 H 0.090 0.910 16 C 0.006 3.994 17 N -0.934 5.934 18 Si 0.876 3.124 19 H -0.282 1.282 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.134 4.134 23 C -0.060 4.060 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.045 0.955 34 H 0.359 0.641 35 H 0.259 0.741 36 H 0.129 0.871 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 -9.309 -14.878 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.358 3.642 4 O -0.400 6.400 5 C -0.144 4.144 6 C -0.067 4.067 7 C -0.133 4.133 8 C -0.017 4.017 9 C -0.137 4.137 10 C 0.072 3.928 11 H 0.076 0.924 12 C -0.225 4.225 13 N -0.389 5.389 14 C -0.369 4.369 15 H 0.107 0.893 16 C -0.190 4.190 17 N -0.582 5.582 18 Si 0.707 3.293 19 H -0.208 1.208 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.152 4.152 23 C -0.079 4.079 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.150 0.850 28 H 0.145 0.855 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.192 0.808 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.429 -9.078 -14.619 18.371 hybrid contribution -0.553 1.339 -0.414 1.507 sum -6.982 -7.739 -15.034 18.294 Atomic orbital electron populations 1.23251 0.76305 1.03560 1.02583 1.86544 1.23319 1.32924 1.84545 1.21335 0.89322 0.81229 0.72324 1.90816 1.66887 1.36056 1.46269 1.18945 0.88381 0.95223 1.11890 1.21197 0.94685 0.96493 0.94285 1.20964 0.92924 0.98670 1.00768 1.20161 0.96323 0.92863 0.92395 1.21151 0.90359 1.02801 0.99375 1.20187 0.92129 0.91039 0.89420 0.92410 1.22413 0.98550 0.99530 1.01971 1.42788 1.81284 1.09920 1.04914 1.19042 1.37534 0.98957 0.81336 0.89257 1.24629 1.01576 0.97481 0.95265 1.69690 1.53343 1.27833 1.07375 0.86671 0.78520 0.84291 0.79845 1.20822 1.21782 1.20361 1.20978 0.94060 0.97539 1.02652 1.21321 0.93863 0.97450 0.95228 0.88095 0.91816 0.91993 0.84962 0.85539 0.90375 0.90888 0.92190 0.94127 0.93555 0.80788 0.93123 0.85287 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.65 9.82 -40.52 -0.40 -5.05 16 3 C 0.51 8.01 7.90 34.61 0.27 8.28 16 4 O -0.51 -9.14 16.14 -19.24 -0.31 -9.45 16 5 C -0.14 -2.23 5.87 -104.98 -0.62 -2.85 16 6 C -0.05 -0.79 9.60 -39.17 -0.38 -1.17 16 7 C -0.12 -1.88 9.07 -39.64 -0.36 -2.24 16 8 C -0.02 -0.26 4.96 -104.53 -0.52 -0.78 16 9 C -0.10 -1.40 4.88 -27.88 -0.14 -1.53 16 10 C 0.18 3.26 2.88 -67.92 -0.20 3.06 16 11 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 13 N -0.75 -16.89 4.37 -53.42 -0.23 -17.12 16 14 C -0.24 -6.61 10.41 -15.06 -0.16 -6.77 16 15 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 16 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 17 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 18 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 21 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 22 C -0.13 -1.81 9.68 -39.64 -0.38 -2.20 16 23 C -0.06 -0.82 9.62 -39.17 -0.38 -1.20 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.13 2.14 7.65 -52.49 -0.40 1.74 16 28 H 0.13 2.03 7.56 -52.49 -0.40 1.64 16 29 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.36 8.00 4.87 -40.82 -0.20 7.81 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.13 1.50 7.61 -52.49 -0.40 1.10 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -33.13 318.38 -6.81 -39.94 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.21 Total: 6.45 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.52 Total: -8.23 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.54 Total: -45.83 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.71 Total: -14.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.13 -6.81 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173709280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.507 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds