Wall clock time and date at job start Mon Mar 30 2020 00:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47715 * 2 1 4 4 O 1.42897 * 109.47473 * 120.01067 * 2 1 3 5 5 C 1.53004 * 109.46886 * 240.00586 * 2 1 3 6 6 C 1.50701 * 109.47199 * 174.99966 * 5 2 1 7 7 O 1.21288 * 119.99869 * 355.77181 * 6 5 2 8 8 N 1.34780 * 120.00244 * 175.76369 * 6 5 2 9 9 C 1.37103 * 119.99459 * 5.03973 * 8 6 5 10 10 H 1.07998 * 120.00110 * 35.03999 * 9 8 6 11 11 C 1.38953 * 119.99734 * 215.03689 * 9 8 6 12 12 N 1.31414 * 119.99686 * 22.19096 * 11 9 8 13 13 Si 1.86799 * 119.99836 * 202.19484 * 11 9 8 14 14 H 1.48495 * 109.47228 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47245 * 120.00162 * 13 11 9 16 16 H 1.48500 * 109.46709 * 239.99699 * 13 11 9 17 17 C 1.46498 * 120.00142 * 185.30778 * 8 6 5 18 18 C 1.50701 * 109.47152 * 269.72746 * 17 8 6 19 19 C 1.38227 * 120.00134 * 269.72810 * 18 17 8 20 20 C 1.38239 * 120.00056 * 179.76921 * 19 18 17 21 21 C 1.38239 * 119.99720 * 0.50348 * 20 19 18 22 22 C 1.38228 * 120.00125 * 359.74915 * 21 20 19 23 23 C 1.38238 * 120.00016 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.47391 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46863 * 299.99501 * 1 2 3 26 26 H 1.09005 * 109.46915 * 59.99429 * 1 2 3 27 27 H 0.96701 * 114.00468 * 59.98920 * 4 2 1 28 28 H 1.09005 * 109.47193 * 55.00031 * 5 2 1 29 29 H 1.09005 * 109.47112 * 294.99848 * 5 2 1 30 30 H 0.97001 * 119.99465 * 176.50423 * 12 11 9 31 31 H 1.08996 * 109.46741 * 29.72991 * 17 8 6 32 32 H 1.08995 * 109.46785 * 149.73041 * 17 8 6 33 33 H 1.08002 * 120.00528 * 359.97438 * 19 18 17 34 34 H 1.08000 * 120.00456 * 180.23284 * 20 19 18 35 35 H 1.07995 * 119.99616 * 179.72881 * 21 20 19 36 36 H 1.07999 * 120.00587 * 179.97438 * 22 21 20 37 37 H 1.07996 * 120.00086 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 1.1666 5 6 2.0399 -0.7211 -1.2494 6 6 3.5418 -0.6148 -1.3129 7 8 4.1386 0.0435 -0.4873 8 7 4.2219 -1.2514 -2.2870 9 6 3.5426 -1.9098 -3.2794 10 1 2.6067 -1.5153 -3.6465 11 6 4.0585 -3.0846 -3.8128 12 7 4.9189 -3.7978 -3.1215 13 14 3.5290 -3.6499 -5.5126 14 1 2.5589 -2.6779 -6.0777 15 1 4.7177 -3.7355 -6.3985 16 1 2.8889 -4.9861 -5.4127 17 6 5.6869 -1.2447 -2.2821 18 6 6.1864 -0.0576 -3.0648 19 6 6.4272 -0.1755 -4.4208 20 6 6.8808 0.9147 -5.1396 21 6 7.1036 2.1199 -4.5002 22 6 6.8678 2.2364 -3.1432 23 6 6.4087 1.1477 -2.4255 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8900 27 1 1.7210 -1.5954 1.2327 28 1 1.6053 -0.2615 -2.1371 29 1 1.7515 -1.7715 -1.2058 30 1 5.2402 -4.6433 -3.4719 31 1 6.0464 -1.1803 -1.2552 32 1 6.0559 -2.1627 -2.7395 33 1 6.2578 -1.1184 -4.9194 34 1 7.0654 0.8237 -6.1998 35 1 7.4622 2.9704 -5.0609 36 1 7.0422 3.1778 -2.6435 37 1 6.2248 1.2386 -1.3651 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181350662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:54 Heat of formation + Delta-G solvation = -65.377016 kcal Electronic energy + Delta-G solvation = -20199.980298 eV Core-core repulsion = 17135.064615 eV Total energy + Delta-G solvation = -3064.915683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.11744 -38.15730 -36.60577 -34.71587 -31.88600 -31.48444 -30.59755 -30.23571 -27.61220 -25.65544 -24.29102 -21.86884 -21.47872 -20.50497 -19.08225 -17.22282 -16.26494 -15.69708 -15.62966 -15.26205 -14.72112 -14.50428 -14.28716 -14.05652 -13.59345 -13.20014 -12.83834 -12.75717 -12.30503 -11.99990 -11.95167 -11.67308 -11.39951 -11.31721 -11.00264 -10.93776 -10.67349 -10.47037 -10.32541 -10.24766 -10.10640 -9.55096 -9.18944 -8.48204 -8.28784 -7.99937 -7.54344 -6.43324 -4.08813 1.98709 2.04103 3.04097 3.16888 3.20295 3.92423 4.05827 4.36468 4.78073 4.92117 5.03238 5.39384 5.45783 5.51277 5.52044 5.61892 5.65258 5.91193 5.96731 6.06003 6.14252 6.19215 6.23787 6.37595 6.41837 6.61588 6.66267 6.71956 6.83056 7.07444 7.10883 7.19713 7.40787 7.52116 7.67052 7.89717 8.19706 8.33817 9.04773 9.51746 9.95919 10.58079 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.009029 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.398580 B = 3100.212970 C = 4615.430902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.118 3.882 3 H 0.097 0.903 4 O -0.551 6.551 5 C -0.152 4.152 6 C 0.475 3.525 7 O -0.589 6.589 8 N -0.438 5.438 9 C -0.333 4.333 10 H 0.088 0.912 11 C 0.044 3.956 12 N -0.858 5.858 13 Si 0.907 3.093 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.281 1.281 17 C 0.143 3.857 18 C -0.076 4.076 19 C -0.098 4.098 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.103 4.103 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.364 0.636 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.270 0.730 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 4.518 -1.726 5.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.059 3.941 3 H 0.115 0.885 4 O -0.355 6.355 5 C -0.192 4.192 6 C 0.264 3.736 7 O -0.474 6.474 8 N -0.156 5.156 9 C -0.461 4.461 10 H 0.105 0.895 11 C -0.162 4.162 12 N -0.495 5.495 13 Si 0.733 3.267 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.207 1.207 17 C 0.020 3.980 18 C -0.077 4.077 19 C -0.117 4.117 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.122 4.122 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.210 0.790 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.582 5.245 -1.250 5.620 hybrid contribution -0.636 -0.974 -1.330 1.767 sum -2.218 4.271 -2.580 5.460 Atomic orbital electron populations 1.22535 0.97301 1.02169 1.02109 1.21648 0.90972 0.97188 0.84313 0.88481 1.86659 1.77370 1.27975 1.43481 1.22140 0.95558 1.02567 0.98922 1.20280 0.89276 0.82959 0.81096 1.90532 1.70539 1.44850 1.41457 1.43411 1.03695 1.46266 1.22256 1.19412 1.07637 1.05150 1.13905 0.89480 1.25309 0.96796 0.95093 0.98978 1.69858 1.31298 1.11983 1.36330 0.86185 0.78895 0.78665 0.82914 1.19154 1.20352 1.20703 1.20464 0.82606 0.96327 0.98645 1.20643 0.96139 0.96474 0.94436 1.21106 0.97983 0.98554 0.94028 1.21041 1.01356 0.93527 0.99199 1.20951 1.02296 0.97318 0.94839 1.21051 1.01275 0.98400 0.94389 1.21303 0.97821 0.92470 1.00585 0.92501 0.92268 0.91878 0.78995 0.89871 0.89380 0.91930 0.91976 0.86611 0.86339 0.87010 0.87190 0.87043 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 9.53 37.16 0.35 -2.04 16 2 C 0.12 2.03 3.13 -26.73 -0.08 1.95 16 3 H 0.10 1.82 7.89 -51.93 -0.41 1.41 16 4 O -0.55 -10.21 12.67 -47.38 -0.60 -10.81 16 5 C -0.15 -2.92 4.08 -27.88 -0.11 -3.03 16 6 C 0.47 11.33 7.47 -10.98 -0.08 11.25 16 7 O -0.59 -15.26 14.34 -6.60 -0.09 -15.36 16 8 N -0.44 -10.75 2.52 -116.10 -0.29 -11.04 16 9 C -0.33 -8.13 8.60 -14.93 -0.13 -8.26 16 10 H 0.09 2.06 7.15 -52.49 -0.38 1.68 16 11 C 0.04 1.06 4.97 -17.47 -0.09 0.98 16 12 N -0.86 -21.71 11.31 55.50 0.63 -21.08 16 13 Si 0.91 18.77 29.61 -169.99 -5.03 13.74 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 15 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 17 C 0.14 3.42 5.10 -5.19 -0.03 3.39 16 18 C -0.08 -1.64 5.46 -104.63 -0.57 -2.21 16 19 C -0.10 -1.97 9.70 -39.59 -0.38 -2.35 16 20 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 21 C -0.14 -2.22 10.05 -39.58 -0.40 -2.61 16 22 C -0.13 -2.32 10.05 -39.59 -0.40 -2.72 16 23 C -0.10 -2.10 9.58 -39.58 -0.38 -2.48 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.36 5.40 9.05 45.56 0.41 5.81 16 28 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 29 H 0.09 1.67 8.06 -51.93 -0.42 1.25 16 30 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 31 H 0.06 1.54 7.44 -51.93 -0.39 1.16 16 32 H 0.12 2.91 5.29 -51.93 -0.27 2.64 16 33 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 2.67 7.40 -52.49 -0.39 2.28 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -29.01 314.50 -7.68 -36.70 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -4.34 Total: 13.95 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -2.69 Total: -10.84 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.33 Total: -32.12 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.70 Total: -26.17 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.01 -7.68 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181350662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.679 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds