Wall clock time and date at job start Sun Mar 29 2020 23:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 H 1.08999 * 109.47226 * 304.90784 * 3 2 1 5 5 C 1.50694 * 109.47117 * 184.90372 * 3 2 1 6 6 H 1.07999 * 120.00462 * 245.45074 * 5 3 2 7 7 C 1.37883 * 119.99804 * 65.45506 * 5 3 2 8 8 N 1.31516 * 119.99815 * 9.68235 * 7 5 3 9 9 Si 1.86803 * 119.99991 * 189.67786 * 7 5 3 10 10 H 1.48495 * 109.46757 * 84.99493 * 9 7 5 11 11 H 1.48500 * 109.46958 * 204.99519 * 9 7 5 12 12 H 1.48497 * 109.47069 * 324.99898 * 9 7 5 13 13 N 1.46500 * 109.46687 * 64.90601 * 3 2 1 14 14 C 1.34778 * 120.00153 * 274.99429 * 13 3 2 15 15 O 1.21517 * 120.00045 * 0.02562 * 14 13 3 16 16 O 1.34678 * 120.00146 * 180.02562 * 14 13 3 17 17 C 1.35935 * 117.00290 * 185.54031 * 16 14 13 18 18 C 1.38723 * 120.05023 * 256.33618 * 17 16 14 19 19 C 1.38146 * 119.94220 * 179.76621 * 18 17 16 20 20 C 1.38265 * 120.05392 * 0.52756 * 19 18 17 21 21 C 1.50705 * 119.94301 * 179.72462 * 20 19 18 22 22 C 1.38256 * 120.10989 * 359.70122 * 20 19 18 23 23 C 1.38147 * 120.05611 * 0.04303 * 22 20 19 24 24 H 1.08997 * 109.46894 * 300.00334 * 1 2 3 25 25 H 1.09003 * 109.46743 * 59.99796 * 1 2 3 26 26 H 1.08996 * 109.47417 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46674 * 240.00168 * 2 1 3 28 28 H 1.08991 * 109.46756 * 120.00615 * 2 1 3 29 29 H 0.97003 * 119.99839 * 179.97438 * 8 7 5 30 30 H 0.96996 * 119.99911 * 95.00681 * 13 3 2 31 31 H 1.07999 * 120.02882 * 0.02562 * 18 17 16 32 32 H 1.08001 * 119.97179 * 180.23143 * 19 18 17 33 33 H 1.09003 * 109.47102 * 269.97333 * 21 20 19 34 34 H 1.09001 * 109.47231 * 29.97943 * 21 20 19 35 35 H 1.08998 * 109.46978 * 149.97806 * 21 20 19 36 36 H 1.08006 * 119.97317 * 180.02562 * 22 20 19 37 37 H 1.07999 * 120.02590 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6068 1.9811 -0.8427 5 6 3.5421 1.4441 -0.1214 6 1 4.1495 1.8089 0.6937 7 6 4.1411 0.9800 -1.2734 8 7 3.4100 0.7155 -2.3341 9 14 5.9912 0.7270 -1.3274 10 1 6.3233 -0.6143 -0.7838 11 1 6.4630 0.8226 -2.7323 12 1 6.6577 1.7717 -0.5092 13 7 1.6506 2.0980 1.2509 14 6 0.4331 2.6651 1.3638 15 8 -0.3416 2.6322 0.4283 16 8 0.0752 3.2683 2.5136 17 6 -1.2046 3.7175 2.6025 18 6 -1.4760 5.0718 2.4731 19 6 -2.7781 5.5254 2.5590 20 6 -3.8091 4.6321 2.7846 21 6 -5.2279 5.1304 2.8840 22 6 -3.5406 3.2825 2.9186 23 6 -2.2408 2.8233 2.8282 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8314 0.3893 -3.1446 30 1 2.2689 2.1241 1.9977 31 1 -0.6706 5.7704 2.3012 32 1 -2.9903 6.5792 2.4545 33 1 -5.4555 5.3740 3.9218 34 1 -5.3439 6.0219 2.2676 35 1 -5.9103 4.3558 2.5345 36 1 -4.3477 2.5867 3.0944 37 1 -2.0316 1.7690 2.9334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194481505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:57 Heat of formation + Delta-G solvation = -60.354835 kcal Electronic energy + Delta-G solvation = -19609.944943 eV Core-core repulsion = 16545.247039 eV Total energy + Delta-G solvation = -3064.697905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74839 -38.78658 -36.88583 -34.87210 -32.59194 -32.02066 -31.00527 -30.93607 -27.31852 -26.38934 -23.39168 -22.83935 -22.23393 -20.70190 -19.59775 -18.66922 -17.25870 -16.37216 -16.10076 -15.53371 -15.13025 -14.63127 -14.41941 -13.86120 -13.77338 -13.47980 -13.28165 -12.84441 -12.72447 -12.26608 -11.95742 -11.63629 -11.50124 -11.44194 -11.32035 -11.04905 -10.83653 -10.49554 -10.38824 -10.22789 -9.90162 -9.65275 -9.18776 -8.95356 -8.54417 -8.41429 -8.03282 -6.20271 -4.26070 1.14596 1.39014 2.91176 3.23578 3.30469 3.32508 3.50552 3.83967 4.30719 4.80073 4.80763 4.88535 5.09440 5.13111 5.24038 5.36513 5.45166 5.65469 5.67827 5.89132 6.00352 6.26685 6.28594 6.32891 6.48035 6.50848 6.53974 6.68474 6.92798 7.08674 7.13376 7.25340 7.33909 7.53436 7.65219 7.75913 7.98415 8.52357 8.73669 9.15314 9.40352 10.87972 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042420 B = 0.004175 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.908966 B = 6704.233535 C = 6979.130269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.283 3.717 4 H 0.060 0.940 5 C -0.540 4.540 6 H 0.064 0.936 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.682 5.682 14 C 0.631 3.369 15 O -0.559 6.559 16 O -0.322 6.322 17 C 0.116 3.884 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.095 4.095 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.118 4.118 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.026 0.974 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.266 0.734 30 H 0.396 0.604 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.126 0.874 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.545 5.691 10.491 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.183 3.817 4 H 0.078 0.922 5 C -0.578 4.578 6 H 0.083 0.917 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.337 5.337 14 C 0.383 3.617 15 O -0.447 6.447 16 O -0.236 6.236 17 C 0.073 3.927 18 C -0.135 4.135 19 C -0.126 4.126 20 C -0.095 4.095 21 C -0.168 4.168 22 C -0.125 4.125 23 C -0.136 4.136 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.229 0.771 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.934 5.625 9.783 16.425 hybrid contribution 1.338 -0.248 0.194 1.374 sum -10.596 5.376 9.977 15.516 Atomic orbital electron populations 1.21841 0.97975 0.98339 1.01456 1.21904 0.93066 0.99642 1.01539 1.18935 0.94588 0.88696 0.79435 0.92249 1.21141 0.90094 1.44499 1.02097 0.91744 1.24879 0.98713 0.94989 0.94804 1.69987 1.35931 1.43485 1.02090 0.86464 0.84577 0.78806 0.77310 1.20326 1.21120 1.19813 1.45555 1.11857 1.56554 1.19755 1.18616 0.84474 0.78168 0.80437 1.90996 1.52228 1.63170 1.38293 1.84279 1.28350 1.71477 1.39467 1.18265 0.81938 0.92042 1.00463 1.21190 0.97425 0.94691 1.00202 1.20845 0.91490 0.99535 1.00748 1.19938 0.95934 0.93562 1.00060 1.20767 0.92381 1.01536 1.02129 1.20847 0.95872 0.95076 1.00699 1.21332 0.92440 0.99873 0.99990 0.94325 0.92820 0.95511 0.89822 0.94355 0.92402 0.77099 0.85239 0.85496 0.91244 0.91532 0.91535 0.85597 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.12 -2.90 5.50 -26.73 -0.15 -3.05 16 3 C 0.28 7.09 2.11 -69.09 -0.15 6.95 16 4 H 0.06 1.72 7.52 -51.93 -0.39 1.33 16 5 C -0.54 -14.11 8.66 -34.44 -0.30 -14.41 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -24.46 12.17 55.43 0.67 -23.79 16 9 Si 0.90 20.36 29.55 -169.99 -5.02 15.33 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.68 -14.71 5.02 -59.86 -0.30 -15.02 16 14 C 0.63 13.57 7.16 54.06 0.39 13.96 16 15 O -0.56 -13.52 13.16 -19.28 -0.25 -13.78 16 16 O -0.32 -6.05 10.08 -24.73 -0.25 -6.30 16 17 C 0.12 1.96 5.07 -39.23 -0.20 1.76 16 18 C -0.12 -1.71 9.99 -39.44 -0.39 -2.11 16 19 C -0.11 -1.32 9.69 -39.61 -0.38 -1.70 16 20 C -0.09 -1.10 5.88 -104.60 -0.62 -1.72 16 21 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 22 C -0.11 -1.35 9.69 -39.61 -0.38 -1.73 16 23 C -0.12 -1.80 9.74 -39.44 -0.38 -2.18 16 24 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 25 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 2.16 6.81 -51.93 -0.35 1.80 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.40 7.57 8.64 -40.82 -0.35 7.22 16 31 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 313.80 15.07 4.73 4.73 Total: -1.00 -29.80 313.80 -7.54 -37.34 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.14 Total: 7.22 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.98 Total: -5.74 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.37 Total: -38.80 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.50 Total: -20.08 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.80 -7.54 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194481505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.019 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds