Wall clock time and date at job start Sun Mar 29 2020 23:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 H 1.08999 * 109.47226 * 304.90784 * 3 2 1 5 5 C 1.50694 * 109.47117 * 184.90372 * 3 2 1 6 6 H 1.07999 * 120.00462 * 245.45074 * 5 3 2 7 7 C 1.37883 * 119.99804 * 65.45506 * 5 3 2 8 8 N 1.31516 * 119.99815 * 9.68235 * 7 5 3 9 9 Si 1.86803 * 119.99991 * 189.67786 * 7 5 3 10 10 H 1.48495 * 109.46757 * 84.99493 * 9 7 5 11 11 H 1.48500 * 109.46958 * 204.99519 * 9 7 5 12 12 H 1.48497 * 109.47069 * 324.99898 * 9 7 5 13 13 N 1.46500 * 109.46687 * 64.90601 * 3 2 1 14 14 C 1.34778 * 120.00153 * 274.99429 * 13 3 2 15 15 O 1.21517 * 120.00045 * 0.02562 * 14 13 3 16 16 O 1.34678 * 120.00146 * 180.02562 * 14 13 3 17 17 C 1.35935 * 117.00290 * 185.54031 * 16 14 13 18 18 C 1.38723 * 120.05023 * 256.33618 * 17 16 14 19 19 C 1.38146 * 119.94220 * 179.76621 * 18 17 16 20 20 C 1.38265 * 120.05392 * 0.52756 * 19 18 17 21 21 C 1.50705 * 119.94301 * 179.72462 * 20 19 18 22 22 C 1.38256 * 120.10989 * 359.70122 * 20 19 18 23 23 C 1.38147 * 120.05611 * 0.04303 * 22 20 19 24 24 H 1.08997 * 109.46894 * 300.00334 * 1 2 3 25 25 H 1.09003 * 109.46743 * 59.99796 * 1 2 3 26 26 H 1.08996 * 109.47417 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46674 * 240.00168 * 2 1 3 28 28 H 1.08991 * 109.46756 * 120.00615 * 2 1 3 29 29 H 0.97003 * 119.99839 * 179.97438 * 8 7 5 30 30 H 0.96996 * 119.99911 * 95.00681 * 13 3 2 31 31 H 1.07999 * 120.02882 * 0.02562 * 18 17 16 32 32 H 1.08001 * 119.97179 * 180.23143 * 19 18 17 33 33 H 1.09003 * 109.47102 * 269.97333 * 21 20 19 34 34 H 1.09001 * 109.47231 * 29.97943 * 21 20 19 35 35 H 1.08998 * 109.46978 * 149.97806 * 21 20 19 36 36 H 1.08006 * 119.97317 * 180.02562 * 22 20 19 37 37 H 1.07999 * 120.02590 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6068 1.9811 -0.8427 5 6 3.5421 1.4441 -0.1214 6 1 4.1495 1.8089 0.6937 7 6 4.1411 0.9800 -1.2734 8 7 3.4100 0.7155 -2.3341 9 14 5.9912 0.7270 -1.3274 10 1 6.3233 -0.6143 -0.7838 11 1 6.4630 0.8226 -2.7323 12 1 6.6577 1.7717 -0.5092 13 7 1.6506 2.0980 1.2509 14 6 0.4331 2.6651 1.3638 15 8 -0.3416 2.6322 0.4283 16 8 0.0752 3.2683 2.5136 17 6 -1.2046 3.7175 2.6025 18 6 -1.4760 5.0718 2.4731 19 6 -2.7781 5.5254 2.5590 20 6 -3.8091 4.6321 2.7846 21 6 -5.2279 5.1304 2.8840 22 6 -3.5406 3.2825 2.9186 23 6 -2.2408 2.8233 2.8282 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8314 0.3893 -3.1446 30 1 2.2689 2.1241 1.9977 31 1 -0.6706 5.7704 2.3012 32 1 -2.9903 6.5792 2.4545 33 1 -5.4555 5.3740 3.9218 34 1 -5.3439 6.0219 2.2676 35 1 -5.9103 4.3558 2.5345 36 1 -4.3477 2.5867 3.0944 37 1 -2.0316 1.7690 2.9334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194481505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:56 Heat of formation + Delta-G solvation = -78.063500 kcal Electronic energy + Delta-G solvation = -19610.712849 eV Core-core repulsion = 16545.247039 eV Total energy + Delta-G solvation = -3065.465810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.22359 -40.07046 -38.42033 -36.71252 -34.44427 -33.29957 -32.60972 -32.03996 -29.15437 -27.49459 -25.23010 -23.94755 -23.70283 -22.05956 -21.44317 -20.32034 -18.74366 -18.09799 -17.71840 -17.07503 -16.47917 -16.14008 -15.89807 -15.35716 -14.87767 -14.59526 -14.51647 -14.39265 -14.36972 -13.62037 -13.36858 -13.22905 -12.95189 -12.88422 -12.64974 -12.54275 -12.45116 -12.28087 -12.12349 -11.74005 -11.64831 -11.49371 -11.16676 -10.56977 -10.00967 -9.89229 -9.50101 -8.22705 -6.36184 -0.01113 0.34003 1.42180 1.46661 1.49628 1.57907 1.79462 2.41240 2.71880 3.09409 3.50312 3.83433 3.92322 3.98694 4.36934 4.39505 4.42050 4.47048 4.49548 4.68081 4.76595 4.89701 4.98979 5.02948 5.10244 5.17562 5.29868 5.32332 5.35160 5.37360 5.54697 5.56930 5.57691 5.70109 5.78656 5.98130 6.04072 6.68211 6.76877 7.29796 7.51875 8.86172 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042420 B = 0.004175 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.908966 B = 6704.233535 C = 6979.130269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 C 0.292 3.708 4 H 0.011 0.989 5 C -0.555 4.555 6 H 0.074 0.926 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.679 5.679 14 C 0.634 3.366 15 O -0.590 6.590 16 O -0.315 6.315 17 C 0.066 3.934 18 C -0.129 4.129 19 C -0.108 4.108 20 C -0.086 4.086 21 C -0.110 4.110 22 C -0.110 4.110 23 C -0.133 4.133 24 H 0.039 0.961 25 H 0.028 0.972 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.267 0.733 30 H 0.408 0.592 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.474 6.261 11.883 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 C 0.191 3.809 4 H 0.028 0.972 5 C -0.593 4.593 6 H 0.092 0.908 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.335 5.335 14 C 0.387 3.613 15 O -0.480 6.480 16 O -0.228 6.228 17 C 0.024 3.976 18 C -0.147 4.147 19 C -0.126 4.126 20 C -0.087 4.087 21 C -0.167 4.167 22 C -0.128 4.128 23 C -0.151 4.151 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.244 0.756 31 H 0.151 0.849 32 H 0.177 0.823 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.172 0.828 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.868 6.211 11.227 18.172 hybrid contribution 1.458 -0.323 -0.193 1.506 sum -11.410 5.888 11.034 16.929 Atomic orbital electron populations 1.21683 0.96687 0.99644 1.00254 1.21756 0.94124 0.98558 1.00957 1.18565 0.94142 0.88991 0.79219 0.97153 1.21477 0.90717 1.44519 1.02542 0.90796 1.25750 1.03365 0.94521 0.94311 1.70124 1.37943 1.44308 1.02698 0.85377 0.78815 0.79093 0.77187 1.19410 1.21215 1.18932 1.45249 1.12450 1.56648 1.19192 1.18647 0.83931 0.77793 0.80896 1.90962 1.53086 1.64245 1.39693 1.84302 1.29944 1.70939 1.37575 1.18732 0.81444 0.93465 1.03933 1.21413 0.98978 0.93905 1.00404 1.21262 0.90414 1.01387 0.99534 1.20457 0.97810 0.93041 0.97344 1.20864 0.89778 1.02331 1.03684 1.21224 0.95345 0.96368 0.99876 1.21468 0.93417 0.99578 1.00650 0.94245 0.95249 0.92811 0.92155 0.92912 0.92366 0.75628 0.84915 0.82305 0.89341 0.90216 0.90464 0.82838 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 8.51 71.98 0.61 -4.97 16 2 C -0.11 -5.54 5.50 30.59 0.17 -5.37 16 3 C 0.29 15.07 2.11 44.24 0.09 15.17 16 4 H 0.01 0.64 7.52 -2.39 -0.02 0.63 16 5 C -0.55 -29.28 8.66 25.60 0.22 -29.06 16 6 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 7 C 0.02 1.16 5.16 84.66 0.44 1.59 16 8 N -0.91 -52.08 12.17 21.45 0.26 -51.82 16 9 Si 0.97 41.67 29.55 68.60 2.03 43.70 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 13 N -0.68 -29.96 5.02 -573.67 -2.88 -32.84 16 14 C 0.63 28.09 7.16 129.79 0.93 29.02 16 15 O -0.59 -29.62 13.16 19.79 0.26 -29.36 16 16 O -0.31 -12.13 10.08 0.29 0.00 -12.13 16 17 C 0.07 2.27 5.07 22.50 0.11 2.39 16 18 C -0.13 -3.73 9.99 22.36 0.22 -3.51 16 19 C -0.11 -2.41 9.69 22.25 0.22 -2.19 16 20 C -0.09 -1.77 5.88 -19.85 -0.12 -1.89 16 21 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 22 C -0.11 -2.58 9.69 22.25 0.22 -2.36 16 23 C -0.13 -4.04 9.74 22.36 0.22 -3.82 16 24 H 0.04 1.72 5.65 -2.39 -0.01 1.71 16 25 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 3.19 6.81 -2.39 -0.02 3.17 16 28 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.41 15.74 8.64 -92.71 -0.80 14.94 16 31 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 35 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -66.09 313.80 3.98 -62.11 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.27 Total: 26.00 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 4.05 Total: -5.65 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.62 Total: -84.67 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: 0.26 Total: -41.49 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -66.09 3.98 -62.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194481505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.956 kcal (2) G-P(sol) polarization free energy of solvation -66.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds