Wall clock time and date at job start Sun Mar 29 2020 23:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47115 * 2 1 4 4 H 1.09000 * 109.46922 * 304.99926 * 3 2 1 5 5 C 1.53000 * 109.47159 * 184.99985 * 3 2 1 6 6 O 1.45206 * 109.47023 * 64.99892 * 3 2 1 7 7 C 1.34645 * 117.00151 * 209.99969 * 6 3 2 8 8 O 1.21513 * 119.99773 * 0.02562 * 7 6 3 9 9 N 1.34771 * 120.00323 * 179.97438 * 7 6 3 10 10 C 1.39135 * 120.00333 * 185.68563 * 9 7 6 11 11 C 1.38651 * 120.28419 * 24.80802 * 10 9 7 12 12 C 1.38214 * 120.03450 * 180.02562 * 11 10 9 13 13 C 1.38868 * 120.61760 * 0.02562 * 12 11 10 14 14 C 1.36466 * 120.57355 * 359.97394 * 13 12 11 15 15 C 1.40730 * 119.94628 * 0.02562 * 14 13 12 16 16 C 1.41076 * 120.30271 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00238 * 214.90353 * 16 15 14 18 18 C 1.39949 * 119.99484 * 34.90316 * 16 15 14 19 19 N 1.30862 * 120.00296 * 355.23627 * 18 16 15 20 20 Si 1.86797 * 119.99795 * 175.23997 * 18 16 15 21 21 H 1.48504 * 109.47407 * 59.99744 * 20 18 16 22 22 H 1.48498 * 109.47419 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47007 * 299.99961 * 20 18 16 24 24 H 1.09001 * 109.47130 * 60.00213 * 1 2 3 25 25 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47225 * 299.99586 * 1 2 3 27 27 H 1.08995 * 109.47482 * 239.99992 * 2 1 3 28 28 H 1.09001 * 109.47130 * 119.99787 * 2 1 3 29 29 H 1.08996 * 109.47134 * 59.99748 * 5 3 2 30 30 H 1.09006 * 109.46946 * 180.02562 * 5 3 2 31 31 H 1.09000 * 109.47156 * 299.99799 * 5 3 2 32 32 H 0.97004 * 119.99361 * 5.69622 * 9 7 6 33 33 H 1.07998 * 119.98034 * 359.97438 * 11 10 9 34 34 H 1.07999 * 119.69387 * 180.02562 * 12 11 10 35 35 H 1.08001 * 119.70953 * 179.97438 * 13 12 11 36 36 H 1.08005 * 120.02480 * 179.74157 * 14 13 12 37 37 H 0.96996 * 119.99737 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6558 2.0917 1.2407 7 6 1.4460 3.4210 1.1957 8 8 1.5799 4.0220 0.1482 9 7 1.0866 4.0847 2.3122 10 6 0.7550 5.4342 2.2431 11 6 0.2932 5.9807 1.0555 12 6 -0.0343 7.3220 0.9924 13 6 0.0948 8.1349 2.1109 14 6 0.5469 7.6232 3.2924 15 6 0.8872 6.2607 3.3835 16 6 1.3559 5.7239 4.6011 17 1 2.1038 4.9449 4.5954 18 6 0.8515 6.2010 5.8162 19 7 0.0154 7.2076 5.8276 20 14 1.3719 5.4009 7.4220 21 1 2.8447 5.5126 7.5762 22 1 0.7025 6.0866 8.5564 23 1 0.9827 3.9679 7.4099 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8532 0.9570 -1.0570 30 1 3.9282 2.4721 -0.1253 31 1 3.9994 0.9054 0.7161 32 1 1.0593 3.6215 3.1641 33 1 0.1900 5.3582 0.1790 34 1 -0.3939 7.7419 0.0647 35 1 -0.1649 9.1812 2.0450 36 1 0.6479 8.2644 4.1557 37 1 -0.3344 7.5380 6.6698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195121089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:52 Heat of formation + Delta-G solvation = -73.632667 kcal Electronic energy + Delta-G solvation = -19758.515719 eV Core-core repulsion = 16693.242045 eV Total energy + Delta-G solvation = -3065.273675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23348 -38.10959 -36.39357 -34.03481 -33.71693 -33.56336 -30.01452 -29.59154 -28.36552 -25.28843 -24.05709 -22.52792 -21.18548 -20.58008 -19.85726 -18.22576 -17.27228 -16.42870 -16.09377 -15.52874 -15.00246 -14.29664 -14.19469 -13.98659 -13.78282 -13.19630 -12.91759 -12.66397 -12.46207 -12.35105 -11.85038 -11.76419 -11.55862 -11.30873 -11.17143 -11.15172 -10.98505 -10.64524 -10.51293 -10.30217 -10.18745 -9.79611 -9.57186 -9.24080 -9.06580 -7.32045 -6.93922 -6.62231 -4.44853 2.60055 2.74214 2.92549 3.05253 3.07079 3.19741 3.61397 3.91882 4.63985 4.66968 4.82311 4.91369 5.09383 5.31929 5.49910 5.53642 5.59704 5.69414 5.83215 5.90222 5.99927 6.15322 6.23395 6.30425 6.47241 6.56693 6.82025 6.88375 7.05681 7.17910 7.26024 7.64574 7.71021 7.98001 8.08216 8.10334 8.40058 8.56812 8.83180 8.85804 9.09103 10.23009 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.005966 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.719531 B = 4692.454454 C = 5731.070117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.103 3.897 4 H 0.086 0.914 5 C -0.170 4.170 6 O -0.369 6.369 7 C 0.633 3.367 8 O -0.570 6.570 9 N -0.615 5.615 10 C 0.039 3.961 11 C -0.105 4.105 12 C -0.211 4.211 13 C -0.122 4.122 14 C -0.135 4.135 15 C 0.095 3.905 16 C -0.472 4.472 17 H 0.074 0.926 18 C 0.075 3.925 19 N -0.808 5.808 20 Si 0.914 3.086 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.411 0.589 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 -10.342 -5.207 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.104 0.896 5 C -0.228 4.228 6 O -0.284 6.284 7 C 0.387 3.613 8 O -0.460 6.460 9 N -0.263 5.263 10 C -0.054 4.054 11 C -0.125 4.125 12 C -0.231 4.231 13 C -0.141 4.141 14 C -0.156 4.156 15 C 0.091 3.909 16 C -0.503 4.503 17 H 0.093 0.907 18 C -0.141 4.141 19 N -0.434 5.434 20 Si 0.738 3.262 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.248 0.752 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.921 -10.018 -5.580 11.626 hybrid contribution 0.182 -0.480 1.098 1.212 sum 2.103 -10.498 -4.482 11.606 Atomic orbital electron populations 1.21769 0.95199 1.01620 1.02624 1.21672 0.96872 0.94172 1.02959 1.22616 0.95066 0.92517 0.85061 0.89604 1.22215 0.94946 1.03323 1.02303 1.86279 1.82341 1.21210 1.38566 1.18213 0.77555 0.80671 0.84909 1.90895 1.57400 1.67455 1.30238 1.41578 1.66816 1.09484 1.08451 1.17738 1.09680 0.80569 0.97399 1.20806 0.99595 0.95480 0.96667 1.20370 1.11005 0.94057 0.97686 1.20560 1.01704 0.97861 0.93994 1.21162 1.02865 0.94819 0.96710 1.17360 0.92021 0.90642 0.90830 1.19252 1.21590 1.19478 0.90009 0.90743 1.25831 0.93452 0.93984 1.00869 1.69753 1.24385 1.20622 1.28674 0.86278 0.79644 0.80038 0.80193 1.19069 1.20364 1.19042 0.92729 0.92580 0.91927 0.90083 0.90848 0.91077 0.91605 0.91815 0.75243 0.86447 0.89050 0.89200 0.84986 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.81 37.16 0.36 -1.31 16 2 C -0.12 -1.25 5.65 -26.73 -0.15 -1.40 16 3 C 0.10 1.42 2.56 -26.73 -0.07 1.35 16 4 H 0.09 1.28 7.16 -51.93 -0.37 0.91 16 5 C -0.17 -2.07 9.55 37.16 0.35 -1.72 16 6 O -0.37 -6.33 9.47 -40.34 -0.38 -6.71 16 7 C 0.63 13.05 8.52 54.05 0.46 13.51 16 8 O -0.57 -12.93 12.76 -19.28 -0.25 -13.18 16 9 N -0.61 -13.36 5.12 -13.88 -0.07 -13.44 16 10 C 0.04 0.96 6.46 -83.17 -0.54 0.43 16 11 C -0.11 -2.56 8.71 -39.44 -0.34 -2.91 16 12 C -0.21 -4.92 10.04 -39.36 -0.39 -5.32 16 13 C -0.12 -2.89 9.97 -39.99 -0.40 -3.29 16 14 C -0.14 -3.48 8.61 -39.28 -0.34 -3.82 16 15 C 0.10 2.48 5.56 -106.65 -0.59 1.89 16 16 C -0.47 -11.93 8.18 -37.87 -0.31 -12.24 16 17 H 0.07 1.80 7.46 -52.49 -0.39 1.40 16 18 C 0.07 1.81 5.42 -17.32 -0.09 1.71 16 19 N -0.81 -20.28 10.61 55.55 0.59 -19.69 16 20 Si 0.91 18.25 29.56 -169.99 -5.03 13.23 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 8.29 7.82 -40.82 -0.32 7.97 16 33 H 0.12 2.83 5.79 -52.49 -0.30 2.53 16 34 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.13 3.48 6.15 -52.48 -0.32 3.16 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -28.17 311.49 -7.54 -35.72 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.05 Total: 12.48 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.05 Total: -13.11 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.52 Total: -33.12 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.63 Total: -19.89 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.17 -7.54 -35.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195121089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.914 kcal (2) G-P(sol) polarization free energy of solvation -28.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds