Wall clock time and date at job start Sun Mar 29 2020 23:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47182 * 2 1 4 4 H 1.08998 * 109.47070 * 305.00466 * 3 2 1 5 5 C 1.52999 * 109.47528 * 185.00212 * 3 2 1 6 6 O 1.45207 * 109.47041 * 65.00005 * 3 2 1 7 7 C 1.34641 * 116.99845 * 210.00227 * 6 3 2 8 8 O 1.21516 * 120.00511 * 0.02562 * 7 6 3 9 9 N 1.34776 * 119.99878 * 180.02562 * 7 6 3 10 10 C 1.39965 * 120.00195 * 184.52652 * 9 7 6 11 11 C 1.39283 * 119.95040 * 144.37598 * 10 9 7 12 12 C 1.38485 * 120.43492 * 179.97438 * 11 10 9 13 13 C 1.37691 * 120.31765 * 0.02562 * 12 11 10 14 14 C 1.40742 * 119.88036 * 0.02562 * 13 12 11 15 15 C 1.41407 * 120.20447 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99543 * 155.37617 * 15 14 13 17 17 C 1.39932 * 120.00524 * 335.37358 * 15 14 13 18 18 N 1.30829 * 119.99404 * 344.59421 * 17 15 14 19 19 Si 1.86797 * 120.00151 * 164.59081 * 17 15 14 20 20 H 1.48500 * 109.47043 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46805 * 120.00370 * 19 17 15 22 22 H 1.48496 * 109.47341 * 240.00256 * 19 17 15 23 23 C 1.38230 * 119.94337 * 324.09424 * 10 9 7 24 24 H 1.08998 * 109.46751 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47101 * 299.99658 * 1 2 3 26 26 H 1.08993 * 109.47429 * 60.00014 * 1 2 3 27 27 H 1.09007 * 109.47433 * 240.00139 * 2 1 3 28 28 H 1.09006 * 109.47673 * 120.00149 * 2 1 3 29 29 H 1.09008 * 109.46823 * 299.99800 * 5 3 2 30 30 H 1.08994 * 109.47126 * 59.99713 * 5 3 2 31 31 H 1.09002 * 109.47361 * 180.02562 * 5 3 2 32 32 H 0.97007 * 119.99819 * 4.79907 * 9 7 6 33 33 H 1.08006 * 119.78279 * 359.97438 * 11 10 9 34 34 H 1.07993 * 119.84249 * 180.02562 * 12 11 10 35 35 H 1.07997 * 120.05784 * 179.97438 * 13 12 11 36 36 H 0.97001 * 119.99501 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.16229 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 8 1.6558 2.0917 1.2408 7 6 1.4460 3.4209 1.1957 8 8 1.5798 4.0220 0.1481 9 7 1.0876 4.0848 2.3125 10 6 0.7775 5.4481 2.2471 11 6 -0.2261 5.9725 3.0581 12 6 -0.5409 7.3200 3.0020 13 6 0.1353 8.1565 2.1425 14 6 1.1511 7.6405 1.3162 15 6 1.8504 8.4935 0.4314 16 1 2.8459 8.2326 0.1037 17 6 1.2526 9.6756 -0.0198 18 7 -0.0362 9.8516 0.1205 19 14 2.2947 11.0020 -0.8222 20 1 3.7123 10.5616 -0.8615 21 1 1.8124 11.2406 -2.2064 22 1 2.1876 12.2581 -0.0374 23 6 1.4716 6.2729 1.3820 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.9994 0.9054 0.7161 30 1 3.8531 0.9571 -1.0571 31 1 3.9281 2.4721 -0.1253 32 1 1.0485 3.6187 3.1623 33 1 -0.7624 5.3241 3.7352 34 1 -1.3205 7.7165 3.6354 35 1 -0.1138 9.2066 2.1019 36 1 -0.4505 10.6712 -0.1919 37 1 2.2534 5.8682 0.7563 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195125942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:56 Heat of formation + Delta-G solvation = -74.419329 kcal Electronic energy + Delta-G solvation = -19477.222082 eV Core-core repulsion = 16411.914295 eV Total energy + Delta-G solvation = -3065.307787 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31713 -38.06264 -36.45972 -34.46643 -33.97184 -32.97106 -30.04744 -29.82093 -28.09476 -25.30787 -24.14155 -22.58133 -21.00334 -20.71241 -20.09077 -18.39737 -17.51302 -16.35823 -15.81058 -15.50266 -14.84730 -14.55466 -14.22768 -14.10278 -13.87095 -13.17513 -13.13444 -12.90726 -12.38828 -12.15777 -11.88827 -11.79782 -11.55286 -11.33381 -11.21586 -11.11786 -10.72216 -10.70354 -10.48918 -10.32087 -10.20593 -9.77691 -9.66704 -9.24273 -8.90158 -7.44700 -6.94657 -6.70229 -4.32955 2.47199 2.74152 2.89446 3.10644 3.16796 3.20638 3.50241 3.97510 4.52951 4.64699 4.67472 4.85656 5.03042 5.27006 5.44189 5.48603 5.62822 5.72568 5.78717 5.85497 5.93473 6.10765 6.18004 6.24884 6.40220 6.58531 6.77046 7.03824 7.07572 7.10941 7.27419 7.55873 7.72969 7.97290 8.09940 8.16924 8.28186 8.66073 8.84941 8.96048 8.99696 10.23437 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024744 B = 0.004733 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.328553 B = 5914.279152 C = 6620.846809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.102 3.898 4 H 0.088 0.912 5 C -0.171 4.171 6 O -0.370 6.370 7 C 0.638 3.362 8 O -0.547 6.547 9 N -0.645 5.645 10 C 0.160 3.840 11 C -0.258 4.258 12 C -0.092 4.092 13 C -0.171 4.171 14 C 0.117 3.883 15 C -0.454 4.454 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.795 5.795 19 Si 0.910 3.090 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.272 1.272 23 C -0.209 4.209 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.404 0.596 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.279 0.721 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -13.252 1.460 13.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.047 3.953 4 H 0.106 0.894 5 C -0.228 4.228 6 O -0.286 6.286 7 C 0.391 3.609 8 O -0.434 6.434 9 N -0.296 5.296 10 C 0.069 3.931 11 C -0.280 4.280 12 C -0.111 4.111 13 C -0.191 4.191 14 C 0.114 3.886 15 C -0.484 4.484 16 H 0.096 0.904 17 C -0.143 4.143 18 N -0.420 5.420 19 Si 0.734 3.266 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.197 1.197 23 C -0.231 4.231 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.238 0.762 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.248 -12.892 0.802 13.111 hybrid contribution 0.280 0.365 -0.089 0.468 sum 2.528 -12.527 0.713 12.800 Atomic orbital electron populations 1.21769 0.95177 1.01635 1.02656 1.21673 0.96881 0.94056 1.03000 1.22671 0.95182 0.92553 0.84940 0.89383 1.22220 0.94781 1.03427 1.02393 1.86254 1.82323 1.21071 1.38920 1.18186 0.77402 0.80711 0.84622 1.91039 1.55223 1.67374 1.29729 1.42041 1.69897 1.09350 1.08286 1.17262 0.96768 0.78717 1.00342 1.20023 1.03326 0.96173 1.08457 1.20463 0.98916 0.92895 0.98815 1.21434 1.00469 0.99813 0.97403 1.17517 0.90877 0.90127 0.90068 1.19607 1.02121 1.03061 1.23617 0.90403 1.25907 0.94820 0.98863 0.94699 1.69833 1.10232 1.25579 1.36390 0.86238 0.81166 0.80214 0.78962 1.18407 1.20000 1.19729 1.21102 1.04768 0.92872 1.04335 0.92540 0.92065 0.92592 0.89949 0.90901 0.91865 0.90907 0.91508 0.76154 0.89106 0.88864 0.85949 0.90989 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.81 37.15 0.36 -1.23 16 2 C -0.12 -1.17 5.65 -26.73 -0.15 -1.33 16 3 C 0.10 1.36 2.56 -26.73 -0.07 1.29 16 4 H 0.09 1.33 7.16 -51.93 -0.37 0.96 16 5 C -0.17 -2.00 9.55 37.16 0.35 -1.65 16 6 O -0.37 -5.89 9.47 -40.33 -0.38 -6.27 16 7 C 0.64 12.58 8.56 54.05 0.46 13.04 16 8 O -0.55 -12.82 13.08 -19.28 -0.25 -13.07 16 9 N -0.65 -12.39 5.34 -14.32 -0.08 -12.47 16 10 C 0.16 3.70 6.28 -83.76 -0.53 3.18 16 11 C -0.26 -5.75 9.97 -39.10 -0.39 -6.14 16 12 C -0.09 -2.15 10.02 -39.69 -0.40 -2.55 16 13 C -0.17 -4.51 8.69 -38.84 -0.34 -4.85 16 14 C 0.12 3.24 5.58 -106.85 -0.60 2.65 16 15 C -0.45 -12.52 9.06 -37.74 -0.34 -12.86 16 16 H 0.08 2.10 7.89 -52.48 -0.41 1.68 16 17 C 0.07 1.91 5.19 -17.34 -0.09 1.82 16 18 N -0.79 -20.94 10.82 55.55 0.60 -20.34 16 19 Si 0.91 19.13 29.59 -169.99 -5.03 14.11 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 23 C -0.21 -5.50 8.43 -38.69 -0.33 -5.83 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.72 7.82 -51.93 -0.41 0.31 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.40 6.21 8.93 -40.82 -0.36 5.85 16 33 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.12 3.30 6.06 -52.49 -0.32 2.98 16 36 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.11 3.04 6.28 -52.49 -0.33 2.71 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -30.35 314.53 -7.59 -37.94 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.14 Total: 9.82 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.04 Total: -14.45 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.52 Total: -32.81 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.63 Total: -19.34 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.35 -7.59 -37.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195125942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.481 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds