Wall clock time and date at job start Sun Mar 29 2020 23:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46567 * 55.00216 * 3 2 1 5 5 O 1.42899 * 109.47085 * 295.00206 * 3 2 1 6 6 C 1.42901 * 113.99913 * 150.00160 * 5 3 2 7 7 H 1.09000 * 109.47154 * 29.99660 * 6 5 3 8 8 C 1.50701 * 109.46883 * 269.99691 * 6 5 3 9 9 H 1.08001 * 120.00434 * 324.84401 * 8 6 5 10 10 C 1.37878 * 119.99868 * 144.83809 * 8 6 5 11 11 N 1.31515 * 120.00210 * 3.45897 * 10 8 6 12 12 Si 1.86800 * 120.00006 * 183.46059 * 10 8 6 13 13 H 1.48506 * 109.47039 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47620 * 120.00186 * 12 10 8 15 15 H 1.48506 * 109.46887 * 240.00480 * 12 10 8 16 16 C 1.50694 * 109.47424 * 149.99918 * 6 5 3 17 17 C 1.38236 * 120.00146 * 217.30223 * 16 6 5 18 18 C 1.38239 * 119.99999 * 179.97438 * 17 16 6 19 19 C 1.38234 * 119.99719 * 0.02562 * 18 17 16 20 20 C 1.38237 * 120.00325 * 359.97438 * 19 18 17 21 21 C 1.38228 * 120.00009 * 359.97438 * 20 19 18 22 22 C 1.50703 * 109.46939 * 175.00065 * 3 2 1 23 23 N 1.34771 * 119.99850 * 299.99814 * 22 3 2 24 24 O 1.21279 * 119.99682 * 120.00364 * 22 3 2 25 25 H 1.09002 * 109.47181 * 59.99363 * 1 2 3 26 26 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46769 * 300.00173 * 1 2 3 28 28 H 1.08997 * 109.47192 * 240.00456 * 2 1 3 29 29 H 1.08998 * 109.47633 * 120.00063 * 2 1 3 30 30 H 0.96996 * 120.00045 * 179.97438 * 11 10 8 31 31 H 1.08000 * 119.99824 * 0.25520 * 17 16 6 32 32 H 1.07995 * 119.99803 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.99823 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.99953 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 36 36 H 0.96996 * 120.00529 * 0.02562 * 23 22 3 37 37 H 0.97008 * 119.99878 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6619 2.0814 -1.2210 6 6 1.4559 3.4903 -1.1002 7 1 2.0992 3.8855 -0.3140 8 6 0.0145 3.7592 -0.7524 9 1 -0.7651 3.1313 -1.1579 10 6 -0.3091 4.8068 0.0837 11 7 0.6329 5.6126 0.5230 12 14 -2.0854 5.0815 0.5923 13 1 -2.9454 4.0452 -0.0336 14 1 -2.1967 4.9913 2.0703 15 1 -2.5262 6.4268 0.1439 16 6 1.7906 4.1609 -2.4076 17 6 2.4109 5.3963 -2.4119 18 6 2.7184 6.0112 -3.6112 19 6 2.4051 5.3908 -4.8062 20 6 1.7848 4.1555 -4.8019 21 6 1.4783 3.5401 -3.6027 22 6 3.5419 1.4443 0.1238 23 7 4.1297 0.8911 1.2031 24 8 4.2216 1.9435 -0.7477 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.4052 6.3497 1.1109 31 1 2.6594 5.8790 -1.4783 32 1 3.2026 6.9765 -3.6145 33 1 2.6450 5.8714 -5.7432 34 1 1.5397 3.6711 -5.7355 35 1 0.9933 2.5752 -3.5993 36 1 3.5861 0.4915 1.9000 37 1 5.0965 0.8925 1.2830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206198513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:19 Heat of formation + Delta-G solvation = -74.116786 kcal Electronic energy + Delta-G solvation = -20359.368518 eV Core-core repulsion = 17294.073850 eV Total energy + Delta-G solvation = -3065.294668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.31442 -38.17069 -36.35797 -33.88599 -33.02062 -32.16807 -30.35822 -29.85122 -27.04266 -26.17146 -23.04800 -21.85499 -21.50197 -20.11938 -19.79139 -17.35682 -16.74927 -16.39962 -15.95312 -15.42692 -14.61415 -14.39759 -13.99175 -13.82299 -13.76164 -13.25936 -13.01883 -12.72648 -12.36359 -12.00750 -11.69846 -11.59681 -11.30399 -11.10223 -10.99112 -10.69344 -10.48435 -10.39893 -10.15690 -10.07639 -9.42375 -9.41042 -9.30920 -8.65968 -8.32578 -7.90427 -7.54317 -6.18931 -4.27620 2.43528 2.45014 3.13931 3.20025 3.29099 3.33421 3.88974 4.28509 4.66732 4.96424 5.15457 5.23685 5.40766 5.62360 5.73138 5.77077 5.88590 5.96984 6.06569 6.20972 6.23784 6.47515 6.51093 6.56189 6.67961 6.80946 7.00366 7.09436 7.11316 7.21268 7.44333 7.55941 7.62770 7.73427 7.81360 8.04145 8.13805 8.28269 8.73877 8.94894 9.40327 10.85078 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.010122 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.946473 B = 2765.668975 C = 4087.782497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C 0.086 3.914 4 H 0.091 0.909 5 O -0.363 6.363 6 C 0.235 3.765 7 H 0.055 0.945 8 C -0.524 4.524 9 H 0.066 0.934 10 C 0.069 3.931 11 N -0.883 5.883 12 Si 0.896 3.104 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.020 4.020 17 C -0.104 4.104 18 C -0.132 4.132 19 C -0.152 4.152 20 C -0.135 4.135 21 C -0.108 4.108 22 C 0.490 3.510 23 N -0.863 5.863 24 O -0.527 6.527 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.265 0.735 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.397 0.603 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 -7.620 1.201 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C 0.023 3.977 4 H 0.108 0.892 5 O -0.281 6.281 6 C 0.179 3.821 7 H 0.073 0.927 8 C -0.562 4.562 9 H 0.085 0.915 10 C -0.135 4.135 11 N -0.521 5.521 12 Si 0.723 3.277 13 H -0.194 1.194 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.021 4.021 17 C -0.122 4.122 18 C -0.150 4.150 19 C -0.170 4.170 20 C -0.153 4.153 21 C -0.126 4.126 22 C 0.275 3.725 23 N -0.429 5.429 24 O -0.401 6.401 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.225 0.775 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.726 -7.154 0.431 7.668 hybrid contribution -0.739 0.402 0.975 1.288 sum 1.987 -6.753 1.406 7.178 Atomic orbital electron populations 1.21670 0.94373 1.00512 1.03670 1.21512 0.97623 0.93851 1.01768 1.21765 0.88258 0.95425 0.92246 0.89151 1.87833 1.87355 1.24273 1.28651 1.18915 0.96109 0.76111 0.90950 0.92722 1.21505 0.92072 1.14302 1.28304 0.91542 1.25013 0.97747 0.95521 0.95210 1.69919 1.32491 1.16268 1.33406 0.86471 0.84599 0.78405 0.78230 1.19392 1.20815 1.20839 1.20239 0.91952 0.94178 0.95744 1.21011 0.98098 0.95461 0.97654 1.20946 1.01726 0.99401 0.92920 1.20802 1.02635 0.96462 0.97089 1.20941 1.01052 0.95915 0.97406 1.20886 1.00168 0.99700 0.91848 1.22047 0.92773 0.76629 0.81056 1.44005 1.10883 1.63663 1.24367 1.90726 1.65716 1.43755 1.39911 0.90991 0.93542 0.92543 0.91386 0.91614 0.92508 0.85992 0.87527 0.87762 0.87622 0.86713 0.77530 0.77709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.81 37.16 0.36 -1.76 16 2 C -0.11 -1.60 5.59 -26.73 -0.15 -1.75 16 3 C 0.09 1.61 2.31 -27.88 -0.06 1.55 16 4 H 0.09 1.77 7.79 -51.93 -0.40 1.37 16 5 O -0.36 -8.35 7.92 -55.14 -0.44 -8.79 16 6 C 0.23 5.95 2.16 -29.04 -0.06 5.89 16 7 H 0.05 1.53 6.89 -51.93 -0.36 1.17 16 8 C -0.52 -13.80 8.61 -34.44 -0.30 -14.10 16 9 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 10 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 11 N -0.88 -24.05 12.82 55.43 0.71 -23.34 16 12 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 C -0.02 -0.51 4.97 -104.62 -0.52 -1.03 16 17 C -0.10 -2.50 9.67 -39.58 -0.38 -2.88 16 18 C -0.13 -2.74 10.05 -39.58 -0.40 -3.14 16 19 C -0.15 -2.94 10.05 -39.58 -0.40 -3.33 16 20 C -0.13 -2.70 10.05 -39.59 -0.40 -3.10 16 21 C -0.11 -2.46 9.35 -39.58 -0.37 -2.83 16 22 C 0.49 9.12 7.44 -10.99 -0.08 9.04 16 23 N -0.86 -10.98 8.74 31.22 0.27 -10.71 16 24 O -0.53 -12.34 17.31 -14.35 -0.25 -12.59 16 25 H 0.07 1.24 7.82 -51.93 -0.41 0.83 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.73 7.43 -51.93 -0.39 0.34 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 31 H 0.12 3.05 8.05 -52.49 -0.42 2.62 16 32 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 33 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.11 2.55 7.70 -52.49 -0.40 2.14 16 36 H 0.40 3.72 8.19 -40.82 -0.33 3.38 16 37 H 0.39 4.41 8.93 -40.82 -0.36 4.04 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -31.70 320.67 -7.91 -39.61 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.16 Total: 11.28 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.85 Total: -15.73 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.98 Total: -34.04 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.69 Total: -21.38 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.70 -7.91 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206198513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.510 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds