Wall clock time and date at job start Sun Mar 29 2020 23:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47207 * 2 1 4 4 H 1.08999 * 109.46567 * 55.00216 * 3 2 1 5 5 O 1.42899 * 109.47085 * 295.00206 * 3 2 1 6 6 C 1.42901 * 113.99913 * 150.00160 * 5 3 2 7 7 H 1.09000 * 109.47154 * 29.99660 * 6 5 3 8 8 C 1.50701 * 109.46883 * 269.99691 * 6 5 3 9 9 H 1.08001 * 120.00434 * 324.84401 * 8 6 5 10 10 C 1.37878 * 119.99868 * 144.83809 * 8 6 5 11 11 N 1.31515 * 120.00210 * 3.45897 * 10 8 6 12 12 Si 1.86800 * 120.00006 * 183.46059 * 10 8 6 13 13 H 1.48506 * 109.47039 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47620 * 120.00186 * 12 10 8 15 15 H 1.48506 * 109.46887 * 240.00480 * 12 10 8 16 16 C 1.50694 * 109.47424 * 149.99918 * 6 5 3 17 17 C 1.38236 * 120.00146 * 217.30223 * 16 6 5 18 18 C 1.38239 * 119.99999 * 179.97438 * 17 16 6 19 19 C 1.38234 * 119.99719 * 0.02562 * 18 17 16 20 20 C 1.38237 * 120.00325 * 359.97438 * 19 18 17 21 21 C 1.38228 * 120.00009 * 359.97438 * 20 19 18 22 22 C 1.50703 * 109.46939 * 175.00065 * 3 2 1 23 23 N 1.34771 * 119.99850 * 299.99814 * 22 3 2 24 24 O 1.21279 * 119.99682 * 120.00364 * 22 3 2 25 25 H 1.09002 * 109.47181 * 59.99363 * 1 2 3 26 26 H 1.08999 * 109.47403 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46769 * 300.00173 * 1 2 3 28 28 H 1.08997 * 109.47192 * 240.00456 * 2 1 3 29 29 H 1.08998 * 109.47633 * 120.00063 * 2 1 3 30 30 H 0.96996 * 120.00045 * 179.97438 * 11 10 8 31 31 H 1.08000 * 119.99824 * 0.25520 * 17 16 6 32 32 H 1.07995 * 119.99803 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.99823 * 179.97438 * 19 18 17 34 34 H 1.08001 * 119.99953 * 179.97438 * 20 19 18 35 35 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 36 36 H 0.96996 * 120.00529 * 0.02562 * 23 22 3 37 37 H 0.97008 * 119.99878 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6619 2.0814 -1.2210 6 6 1.4559 3.4903 -1.1002 7 1 2.0992 3.8855 -0.3140 8 6 0.0145 3.7592 -0.7524 9 1 -0.7651 3.1313 -1.1579 10 6 -0.3091 4.8068 0.0837 11 7 0.6329 5.6126 0.5230 12 14 -2.0854 5.0815 0.5923 13 1 -2.9454 4.0452 -0.0336 14 1 -2.1967 4.9913 2.0703 15 1 -2.5262 6.4268 0.1439 16 6 1.7906 4.1609 -2.4076 17 6 2.4109 5.3963 -2.4119 18 6 2.7184 6.0112 -3.6112 19 6 2.4051 5.3908 -4.8062 20 6 1.7848 4.1555 -4.8019 21 6 1.4783 3.5401 -3.6027 22 6 3.5419 1.4443 0.1238 23 7 4.1297 0.8911 1.2031 24 8 4.2216 1.9435 -0.7477 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 0.4052 6.3497 1.1109 31 1 2.6594 5.8790 -1.4783 32 1 3.2026 6.9765 -3.6145 33 1 2.6450 5.8714 -5.7432 34 1 1.5397 3.6711 -5.7355 35 1 0.9933 2.5752 -3.5993 36 1 3.5861 0.4915 1.9000 37 1 5.0965 0.8925 1.2830 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206198513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:18 Heat of formation + Delta-G solvation = -95.093347 kcal Electronic energy + Delta-G solvation = -20360.278130 eV Core-core repulsion = 17294.073850 eV Total energy + Delta-G solvation = -3066.204280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87501 -39.85052 -38.02406 -35.43807 -34.72290 -33.67739 -32.05274 -31.53762 -28.74426 -27.84097 -24.92539 -23.24967 -23.09223 -21.85638 -21.25189 -18.91549 -18.45664 -18.02243 -17.54556 -17.12954 -16.29073 -16.12085 -15.59481 -15.37167 -15.26731 -14.82493 -14.60564 -14.42825 -14.02729 -13.65012 -13.27921 -13.07901 -12.99556 -12.84710 -12.70933 -12.22740 -12.16056 -11.95363 -11.75019 -11.67596 -11.29726 -11.11212 -10.66472 -10.62953 -10.03619 -9.60215 -9.31352 -8.18630 -6.35446 0.72270 0.76446 1.37676 1.40524 1.52280 1.65072 2.35750 2.57751 2.97746 3.19044 3.29827 3.94876 4.09824 4.24021 4.27305 4.29953 4.41008 4.47194 4.63854 4.77036 4.85194 4.95171 4.97232 5.10471 5.17605 5.26551 5.37739 5.42083 5.57158 5.65897 5.76428 5.84724 5.91682 6.03742 6.12875 6.33829 6.39041 6.54504 6.95620 7.35534 7.41555 8.84469 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.011907 B = 0.010122 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.946473 B = 2765.668975 C = 4087.782497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C 0.076 3.924 4 H 0.077 0.923 5 O -0.377 6.377 6 C 0.249 3.751 7 H 0.015 0.985 8 C -0.533 4.533 9 H 0.057 0.943 10 C 0.025 3.975 11 N -0.912 5.912 12 Si 0.957 3.043 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.284 1.284 16 C -0.055 4.055 17 C -0.134 4.134 18 C -0.131 4.131 19 C -0.142 4.142 20 C -0.128 4.128 21 C -0.127 4.127 22 C 0.489 3.511 23 N -0.831 5.831 24 O -0.584 6.584 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.266 0.734 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.111 0.889 36 H 0.417 0.583 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -8.585 0.549 8.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C 0.014 3.986 4 H 0.095 0.905 5 O -0.295 6.295 6 C 0.193 3.807 7 H 0.033 0.967 8 C -0.571 4.571 9 H 0.076 0.924 10 C -0.176 4.176 11 N -0.550 5.550 12 Si 0.782 3.218 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.210 1.210 16 C -0.055 4.055 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.160 4.160 20 C -0.146 4.146 21 C -0.145 4.145 22 C 0.274 3.726 23 N -0.398 5.398 24 O -0.463 6.463 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.129 0.871 36 H 0.249 0.751 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.304 -8.168 -0.161 8.488 hybrid contribution -0.528 0.647 1.179 1.444 sum 1.776 -7.521 1.018 7.795 Atomic orbital electron populations 1.21638 0.94387 1.02064 1.01851 1.21576 0.97531 0.90943 1.03830 1.22104 0.88815 0.97438 0.90287 0.90505 1.87775 1.87782 1.23056 1.30892 1.18554 0.94702 0.77094 0.90364 0.96711 1.21606 0.92443 1.14350 1.28655 0.92430 1.25734 1.01490 0.95157 0.95183 1.70052 1.34262 1.16701 1.33990 0.85525 0.79982 0.78003 0.78324 1.18857 1.19659 1.21012 1.20382 0.93796 0.94987 0.96378 1.20994 1.00103 0.95944 0.98188 1.21297 1.00962 1.00404 0.92271 1.21306 1.00599 0.95876 0.98202 1.21381 0.99453 0.96066 0.97690 1.20985 1.01103 0.99948 0.92442 1.22005 0.92543 0.76426 0.81657 1.43642 1.11842 1.61453 1.22854 1.90700 1.66588 1.46603 1.42379 0.94300 0.90227 0.92879 0.91489 0.87169 0.92475 0.88660 0.84677 0.83155 0.83735 0.87131 0.75108 0.76231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.81 71.98 0.71 -3.35 16 2 C -0.10 -2.83 5.59 30.59 0.17 -2.66 16 3 C 0.08 2.93 2.31 29.85 0.07 3.00 16 4 H 0.08 3.15 7.79 -2.39 -0.02 3.13 16 5 O -0.38 -18.24 7.92 -129.94 -1.03 -19.27 16 6 C 0.25 13.40 2.16 29.10 0.06 13.46 16 7 H 0.01 0.90 6.89 -2.39 -0.02 0.88 16 8 C -0.53 -29.32 8.61 25.60 0.22 -29.10 16 9 H 0.06 3.19 7.82 -2.91 -0.02 3.16 16 10 C 0.03 1.36 5.46 84.65 0.46 1.82 16 11 N -0.91 -51.80 12.82 21.45 0.27 -51.53 16 12 Si 0.96 42.68 29.54 68.60 2.03 44.71 16 13 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 14 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 16 C -0.05 -2.85 4.97 -19.87 -0.10 -2.95 16 17 C -0.13 -6.70 9.67 22.27 0.22 -6.48 16 18 C -0.13 -5.34 10.05 22.27 0.22 -5.12 16 19 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 20 C -0.13 -4.86 10.05 22.27 0.22 -4.63 16 21 C -0.13 -5.85 9.35 22.27 0.21 -5.64 16 22 C 0.49 18.50 7.44 87.66 0.65 19.15 16 23 N -0.83 -20.10 8.74 -173.54 -1.52 -21.62 16 24 O -0.58 -28.46 17.31 16.01 0.28 -28.18 16 25 H 0.04 1.35 7.82 -2.39 -0.02 1.33 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 2.08 7.43 -2.39 -0.02 2.06 16 30 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.10 5.14 8.05 -2.91 -0.02 5.12 16 32 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 33 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.11 5.05 7.70 -2.91 -0.02 5.03 16 36 H 0.42 6.80 8.19 -92.71 -0.76 6.04 16 37 H 0.41 8.50 8.93 -92.70 -0.83 7.67 16 Total: -1.00 -73.78 320.67 2.87 -70.91 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.51 Total: 32.33 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 3.34 Total: -27.36 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.24 Total: -73.15 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.75 Total: -47.44 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.78 2.87 -70.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206198513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.179 kcal (2) G-P(sol) polarization free energy of solvation -73.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds