Wall clock time and date at job start Sun Mar 29 2020 23:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.08998 * 109.46950 * 305.00415 * 3 2 1 5 5 O 1.42904 * 109.46901 * 64.99835 * 3 2 1 6 6 C 1.42900 * 113.99986 * 210.00103 * 5 3 2 7 7 H 1.09001 * 109.47013 * 30.00051 * 6 5 3 8 8 C 1.50704 * 109.46830 * 270.00224 * 6 5 3 9 9 H 1.07997 * 120.00445 * 305.41652 * 8 6 5 10 10 C 1.37881 * 119.99767 * 125.69844 * 8 6 5 11 11 N 1.31508 * 119.99845 * 176.53910 * 10 8 6 12 12 Si 1.86795 * 119.99783 * 356.53155 * 10 8 6 13 13 H 1.48505 * 109.46976 * 84.94328 * 12 10 8 14 14 H 1.48503 * 109.47128 * 204.93933 * 12 10 8 15 15 H 1.48498 * 109.47578 * 324.94054 * 12 10 8 16 16 C 1.50699 * 109.47168 * 150.00357 * 6 5 3 17 17 C 1.38239 * 119.99575 * 37.44484 * 16 6 5 18 18 C 1.38235 * 119.99663 * 179.80950 * 17 16 6 19 19 C 1.38238 * 119.99909 * 0.40137 * 18 17 16 20 20 C 1.38233 * 120.00236 * 359.85135 * 19 18 17 21 21 C 1.38229 * 120.00164 * 217.72139 * 16 6 5 22 22 C 1.50698 * 109.47163 * 185.00282 * 3 2 1 23 23 N 1.34778 * 120.00093 * 65.00206 * 22 3 2 24 24 O 1.21282 * 119.99507 * 245.00047 * 22 3 2 25 25 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46791 * 299.99622 * 1 2 3 27 27 H 1.09004 * 109.47377 * 59.99993 * 1 2 3 28 28 H 1.08998 * 109.46791 * 240.00378 * 2 1 3 29 29 H 1.08996 * 109.47171 * 120.00303 * 2 1 3 30 30 H 0.97010 * 119.99774 * 179.97438 * 11 10 8 31 31 H 1.08000 * 120.00365 * 0.02562 * 17 16 6 32 32 H 1.07995 * 120.00183 * 180.22995 * 18 17 16 33 33 H 1.08006 * 120.00157 * 179.83305 * 19 18 17 34 34 H 1.08000 * 120.00371 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99902 * 359.97438 * 21 16 6 36 36 H 0.96995 * 119.99778 * 359.97438 * 23 22 3 37 37 H 0.97006 * 119.99496 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 1.4558 3.4903 1.1003 7 1 1.1089 3.7217 0.0933 8 6 2.7524 4.2119 1.3633 9 1 3.2930 4.0339 2.2811 10 6 3.2456 5.1038 0.4346 11 7 4.3409 5.7841 0.6935 12 14 2.3581 5.3456 -1.1911 13 1 1.2718 6.3434 -1.0184 14 1 3.3198 5.8327 -2.2124 15 1 1.7770 4.0531 -1.6350 16 6 0.4216 3.9344 2.1024 17 6 0.3874 3.3619 3.3602 18 6 -0.5588 3.7720 4.2808 19 6 -1.4761 4.7487 3.9407 20 6 -1.4452 5.3175 2.6812 21 6 -0.4965 4.9101 1.7619 22 6 3.5419 1.4443 -0.1239 23 7 4.1259 0.9829 -1.2475 24 8 4.2249 1.8611 0.7875 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.6880 6.4114 0.0399 31 1 1.1021 2.5967 3.6249 32 1 -0.5832 3.3275 5.2647 33 1 -2.2171 5.0673 4.6590 34 1 -2.1621 6.0803 2.4153 35 1 -0.4723 5.3544 0.7779 36 1 3.5796 0.6492 -1.9762 37 1 5.0927 0.9844 -1.3273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206198517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:22 Heat of formation + Delta-G solvation = -61.943225 kcal Electronic energy + Delta-G solvation = -20550.213063 eV Core-core repulsion = 17485.446280 eV Total energy + Delta-G solvation = -3064.766782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.22059 -38.40090 -36.38704 -33.86927 -32.76951 -32.14713 -30.80604 -30.17196 -27.23137 -26.53743 -22.82859 -21.96638 -21.76953 -20.20375 -19.74791 -17.41283 -16.96683 -16.35762 -16.12069 -15.44976 -14.86263 -14.39031 -14.01771 -13.98288 -13.63044 -13.34553 -12.93308 -12.74243 -12.64328 -12.36761 -12.12968 -11.82156 -11.55127 -11.21115 -11.04056 -10.98731 -10.78376 -10.44827 -10.35292 -9.80641 -9.57012 -9.10790 -8.99268 -8.66362 -8.35376 -8.22027 -7.77889 -6.11905 -4.08282 2.08740 2.13391 3.09403 3.16046 3.22613 3.47834 4.04544 4.27307 4.44866 4.64375 5.21463 5.24579 5.27538 5.45856 5.52747 5.57763 5.63734 5.72331 5.87881 5.95428 6.04784 6.06514 6.20714 6.30493 6.35200 6.44695 6.56058 6.72397 6.79128 7.13340 7.23798 7.36653 7.42161 7.50988 7.73723 7.88063 8.16423 8.51550 9.08837 9.09521 9.47993 11.01916 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.009815 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.875726 B = 2852.016735 C = 3843.716153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.085 3.915 4 H 0.070 0.930 5 O -0.360 6.360 6 C 0.206 3.794 7 H 0.032 0.968 8 C -0.492 4.492 9 H 0.086 0.914 10 C 0.079 3.921 11 N -0.880 5.880 12 Si 0.857 3.143 13 H -0.270 1.270 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.031 4.031 17 C -0.099 4.099 18 C -0.126 4.126 19 C -0.147 4.147 20 C -0.123 4.123 21 C -0.128 4.128 22 C 0.483 3.517 23 N -0.872 5.872 24 O -0.478 6.478 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.264 0.736 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.390 0.610 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 -8.853 -3.956 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.023 3.977 4 H 0.088 0.912 5 O -0.278 6.278 6 C 0.151 3.849 7 H 0.050 0.950 8 C -0.529 4.529 9 H 0.104 0.896 10 C -0.124 4.124 11 N -0.518 5.518 12 Si 0.684 3.316 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.195 1.195 16 C -0.032 4.032 17 C -0.117 4.117 18 C -0.144 4.144 19 C -0.165 4.165 20 C -0.141 4.141 21 C -0.146 4.146 22 C 0.266 3.734 23 N -0.440 5.440 24 O -0.347 6.347 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.217 0.783 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.796 -8.449 -3.072 12.578 hybrid contribution -0.030 0.455 -1.702 1.762 sum -8.826 -7.995 -4.774 12.830 Atomic orbital electron populations 1.21710 0.94986 1.01163 1.02666 1.21580 0.96914 0.94287 1.02500 1.21780 0.90613 0.94770 0.90559 0.91188 1.87909 1.87453 1.23263 1.29181 1.19368 0.93635 0.79304 0.92620 0.95032 1.21185 1.03166 1.21590 1.06981 0.89639 1.25019 0.94578 0.95429 0.97377 1.69876 1.21171 1.25501 1.35287 0.87217 0.80215 0.78717 0.85421 1.19580 1.21010 1.19460 1.20151 0.92456 0.94647 0.95946 1.20959 0.97951 0.99839 0.92982 1.21060 0.96311 0.98079 0.98925 1.20881 1.00137 0.98879 0.96584 1.20905 0.99021 1.00065 0.94103 1.20856 0.95636 0.98557 0.99576 1.21476 0.92088 0.77417 0.82419 1.44003 1.10755 1.69581 1.19640 1.90834 1.64550 1.40992 1.38374 0.92924 0.91407 0.93110 0.91239 0.90764 0.92594 0.85898 0.87044 0.87249 0.87066 0.87198 0.78313 0.77659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.81 37.16 0.36 -1.53 16 2 C -0.11 -1.62 5.61 -26.73 -0.15 -1.77 16 3 C 0.09 1.61 2.51 -27.88 -0.07 1.54 16 4 H 0.07 1.30 6.71 -51.93 -0.35 0.95 16 5 O -0.36 -8.08 8.04 -55.09 -0.44 -8.52 16 6 C 0.21 4.97 2.28 -29.03 -0.07 4.91 16 7 H 0.03 0.76 3.70 -51.93 -0.19 0.56 16 8 C -0.49 -14.12 7.21 -34.44 -0.25 -14.36 16 9 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 10 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 11 N -0.88 -27.28 13.96 55.43 0.77 -26.51 16 12 Si 0.86 20.83 27.15 -169.99 -4.61 16.22 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.27 -6.01 5.85 56.52 0.33 -5.68 16 16 C -0.03 -0.70 4.97 -104.63 -0.52 -1.22 16 17 C -0.10 -2.05 9.35 -39.58 -0.37 -2.42 16 18 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 19 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 20 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 21 C -0.13 -2.59 9.67 -39.58 -0.38 -2.98 16 22 C 0.48 9.88 7.17 -10.99 -0.08 9.80 16 23 N -0.87 -12.95 8.77 31.22 0.27 -12.67 16 24 O -0.48 -12.50 15.64 -14.30 -0.22 -12.73 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.76 7.77 -51.93 -0.40 0.36 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.12 2.59 7.70 -52.49 -0.40 2.19 16 32 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.11 2.16 8.05 -52.49 -0.42 1.74 16 36 H 0.39 4.26 8.53 -40.82 -0.35 3.91 16 37 H 0.39 5.44 8.93 -40.82 -0.36 5.08 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -34.53 312.01 -7.40 -41.93 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.06 Total: 11.37 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -2.81 Total: -13.79 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 1.05 Total: -39.18 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.67 Total: -21.25 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.61 Total: 16.22 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.53 -7.40 -41.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206198517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.018 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds