Wall clock time and date at job start Sun Mar 29 2020 23:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.08998 * 109.46950 * 305.00415 * 3 2 1 5 5 O 1.42904 * 109.46901 * 64.99835 * 3 2 1 6 6 C 1.42900 * 113.99986 * 210.00103 * 5 3 2 7 7 H 1.09001 * 109.47013 * 30.00051 * 6 5 3 8 8 C 1.50704 * 109.46830 * 270.00224 * 6 5 3 9 9 H 1.07997 * 120.00445 * 305.41652 * 8 6 5 10 10 C 1.37881 * 119.99767 * 125.69844 * 8 6 5 11 11 N 1.31508 * 119.99845 * 176.53910 * 10 8 6 12 12 Si 1.86795 * 119.99783 * 356.53155 * 10 8 6 13 13 H 1.48505 * 109.46976 * 84.94328 * 12 10 8 14 14 H 1.48503 * 109.47128 * 204.93933 * 12 10 8 15 15 H 1.48498 * 109.47578 * 324.94054 * 12 10 8 16 16 C 1.50699 * 109.47168 * 150.00357 * 6 5 3 17 17 C 1.38239 * 119.99575 * 37.44484 * 16 6 5 18 18 C 1.38235 * 119.99663 * 179.80950 * 17 16 6 19 19 C 1.38238 * 119.99909 * 0.40137 * 18 17 16 20 20 C 1.38233 * 120.00236 * 359.85135 * 19 18 17 21 21 C 1.38229 * 120.00164 * 217.72139 * 16 6 5 22 22 C 1.50698 * 109.47163 * 185.00282 * 3 2 1 23 23 N 1.34778 * 120.00093 * 65.00206 * 22 3 2 24 24 O 1.21282 * 119.99507 * 245.00047 * 22 3 2 25 25 H 1.09004 * 109.47082 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46791 * 299.99622 * 1 2 3 27 27 H 1.09004 * 109.47377 * 59.99993 * 1 2 3 28 28 H 1.08998 * 109.46791 * 240.00378 * 2 1 3 29 29 H 1.08996 * 109.47171 * 120.00303 * 2 1 3 30 30 H 0.97010 * 119.99774 * 179.97438 * 11 10 8 31 31 H 1.08000 * 120.00365 * 0.02562 * 17 16 6 32 32 H 1.07995 * 120.00183 * 180.22995 * 18 17 16 33 33 H 1.08006 * 120.00157 * 179.83305 * 19 18 17 34 34 H 1.08000 * 120.00371 * 179.97438 * 20 19 18 35 35 H 1.07997 * 119.99902 * 359.97438 * 21 16 6 36 36 H 0.96995 * 119.99778 * 359.97438 * 23 22 3 37 37 H 0.97006 * 119.99496 * 179.97438 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 1.4558 3.4903 1.1003 7 1 1.1089 3.7217 0.0933 8 6 2.7524 4.2119 1.3633 9 1 3.2930 4.0339 2.2811 10 6 3.2456 5.1038 0.4346 11 7 4.3409 5.7841 0.6935 12 14 2.3581 5.3456 -1.1911 13 1 1.2718 6.3434 -1.0184 14 1 3.3198 5.8327 -2.2124 15 1 1.7770 4.0531 -1.6350 16 6 0.4216 3.9344 2.1024 17 6 0.3874 3.3619 3.3602 18 6 -0.5588 3.7720 4.2808 19 6 -1.4761 4.7487 3.9407 20 6 -1.4452 5.3175 2.6812 21 6 -0.4965 4.9101 1.7619 22 6 3.5419 1.4443 -0.1239 23 7 4.1259 0.9829 -1.2475 24 8 4.2249 1.8611 0.7875 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 4.6880 6.4114 0.0399 31 1 1.1021 2.5967 3.6249 32 1 -0.5832 3.3275 5.2647 33 1 -2.2171 5.0673 4.6590 34 1 -2.1621 6.0803 2.4153 35 1 -0.4723 5.3544 0.7779 36 1 3.5796 0.6492 -1.9762 37 1 5.0927 0.9844 -1.3273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206198517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:22 Heat of formation + Delta-G solvation = -87.448189 kcal Electronic energy + Delta-G solvation = -20551.319041 eV Core-core repulsion = 17485.446280 eV Total energy + Delta-G solvation = -3065.872761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.84299 -39.92140 -38.04985 -35.43823 -34.57233 -33.76782 -32.36046 -31.62619 -29.01582 -28.04699 -24.65701 -23.37133 -23.08886 -21.80110 -21.28170 -19.35268 -18.57298 -17.87674 -17.71051 -17.05931 -16.45634 -16.13243 -15.53014 -15.34022 -15.15002 -14.86457 -14.68682 -14.42331 -14.14737 -14.03629 -13.53298 -13.36530 -12.93008 -12.86219 -12.76205 -12.46275 -12.01493 -11.94193 -11.80280 -11.74746 -11.27173 -10.98510 -10.81602 -10.46803 -10.03622 -9.68453 -9.38990 -8.31257 -6.33862 0.61505 0.65942 1.15313 1.23054 1.30093 1.88044 2.22748 2.60897 2.86740 3.11949 3.19891 3.95469 3.99599 4.09280 4.18446 4.27235 4.31681 4.39053 4.42570 4.57006 4.66714 4.83416 4.86918 4.98814 5.08144 5.21500 5.23585 5.30808 5.42301 5.48002 5.69896 5.74622 5.88749 6.03921 6.14524 6.27443 6.48013 6.67135 6.80001 7.27886 7.61271 8.87956 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.009815 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.875726 B = 2852.016735 C = 3843.716153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.072 3.928 4 H 0.081 0.919 5 O -0.373 6.373 6 C 0.217 3.783 7 H 0.039 0.961 8 C -0.489 4.489 9 H 0.015 0.985 10 C 0.017 3.983 11 N -0.942 5.942 12 Si 0.921 3.079 13 H -0.252 1.252 14 H -0.283 1.283 15 H -0.237 1.237 16 C -0.067 4.067 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.118 4.118 21 C -0.144 4.144 22 C 0.477 3.523 23 N -0.845 5.845 24 O -0.552 6.552 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.264 0.736 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.414 0.586 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -9.546 -5.673 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C 0.010 3.990 4 H 0.099 0.901 5 O -0.291 6.291 6 C 0.161 3.839 7 H 0.056 0.944 8 C -0.527 4.527 9 H 0.034 0.966 10 C -0.181 4.181 11 N -0.582 5.582 12 Si 0.743 3.257 13 H -0.176 1.176 14 H -0.209 1.209 15 H -0.160 1.160 16 C -0.067 4.067 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.152 4.152 20 C -0.135 4.135 21 C -0.162 4.162 22 C 0.261 3.739 23 N -0.413 5.413 24 O -0.427 6.427 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.159 0.841 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.131 0.869 36 H 0.245 0.755 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -12.496 -9.203 -4.843 16.258 hybrid contribution 1.097 0.563 -1.052 1.621 sum -11.399 -8.641 -5.895 15.471 Atomic orbital electron populations 1.21693 0.93615 1.02838 1.02011 1.21634 0.98016 0.90872 1.03911 1.22256 0.89693 0.97523 0.89480 0.90108 1.87877 1.87490 1.22229 1.31505 1.19115 0.91771 0.79465 0.93543 0.94375 1.21157 1.04969 1.22147 1.04419 0.96625 1.25925 0.95380 0.94904 1.01850 1.70079 1.23847 1.27222 1.37085 0.86173 0.79358 0.80528 0.79625 1.17599 1.20859 1.16047 1.20157 0.93803 0.96565 0.96196 1.20937 0.99049 1.00334 0.93704 1.21395 0.95236 0.98117 0.99398 1.21398 0.99754 0.97047 0.96970 1.21353 0.98369 1.00109 0.93702 1.21049 0.96225 0.98243 1.00719 1.21933 0.92837 0.76476 0.82654 1.43706 1.11548 1.67418 1.18625 1.90824 1.66022 1.44684 1.41187 0.90072 0.93965 0.91871 0.87201 0.91906 0.92693 0.88237 0.84149 0.82881 0.83303 0.86879 0.75470 0.76812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.81 71.98 0.71 -2.60 16 2 C -0.11 -2.78 5.61 30.59 0.17 -2.61 16 3 C 0.07 2.69 2.51 29.85 0.08 2.77 16 4 H 0.08 2.81 6.71 -2.39 -0.02 2.80 16 5 O -0.37 -17.36 8.04 -129.99 -1.04 -18.40 16 6 C 0.22 10.78 2.28 29.10 0.07 10.84 16 7 H 0.04 1.80 3.70 -2.39 -0.01 1.80 16 8 C -0.49 -29.90 7.21 25.60 0.18 -29.72 16 9 H 0.02 1.13 8.06 -2.91 -0.02 1.10 16 10 C 0.02 1.01 5.47 84.66 0.46 1.47 16 11 N -0.94 -61.86 13.96 21.45 0.30 -61.56 16 12 Si 0.92 43.05 27.15 68.60 1.86 44.92 16 13 H -0.25 -10.98 7.11 99.48 0.71 -10.27 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.24 -9.65 5.85 99.48 0.58 -9.07 16 16 C -0.07 -3.02 4.97 -19.87 -0.10 -3.12 16 17 C -0.12 -5.18 9.35 22.27 0.21 -4.97 16 18 C -0.12 -4.13 10.05 22.27 0.22 -3.90 16 19 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 20 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 21 C -0.14 -5.64 9.67 22.27 0.22 -5.43 16 22 C 0.48 19.72 7.17 87.66 0.63 20.35 16 23 N -0.84 -23.87 8.77 -173.53 -1.52 -25.39 16 24 O -0.55 -30.65 15.64 15.95 0.25 -30.40 16 25 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.04 1.18 7.82 -2.39 -0.02 1.16 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.11 1.97 7.77 -2.39 -0.02 1.95 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.26 16.13 8.31 -92.70 -0.77 15.36 16 31 H 0.10 4.55 7.70 -2.91 -0.02 4.53 16 32 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 35 H 0.11 4.24 8.05 -2.91 -0.02 4.22 16 36 H 0.41 7.69 8.53 -92.71 -0.79 6.90 16 37 H 0.40 10.72 8.93 -92.70 -0.83 9.89 16 Total: -1.00 -84.49 312.01 2.48 -82.01 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.65 Total: 32.83 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 3.29 Total: -24.02 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -1.22 Total: -86.95 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.80 Total: -48.80 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 1.86 Total: 44.92 kcal Total: -84.49 2.48 -82.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206198517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.439 kcal (2) G-P(sol) polarization free energy of solvation -84.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds