Wall clock time and date at job start Sun Mar 29 2020 23:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46685 * 2 1 4 4 H 1.08992 * 109.46821 * 305.56386 * 3 2 1 5 5 C 1.50697 * 109.46676 * 185.56567 * 3 2 1 6 6 H 1.08001 * 120.00023 * 245.40408 * 5 3 2 7 7 C 1.37877 * 120.00271 * 65.40730 * 5 3 2 8 8 N 1.31509 * 120.00007 * 197.21313 * 7 5 3 9 9 Si 1.86796 * 119.99811 * 17.21668 * 7 5 3 10 10 H 1.48498 * 109.47534 * 86.84185 * 9 7 5 11 11 H 1.48506 * 109.47014 * 206.84086 * 9 7 5 12 12 H 1.48504 * 109.47060 * 326.83709 * 9 7 5 13 13 N 1.46895 * 109.47122 * 65.56502 * 3 2 1 14 14 C 1.46899 * 111.00160 * 251.66630 * 13 3 2 15 15 C 1.52998 * 109.47136 * 183.70764 * 14 13 3 16 16 O 1.43986 * 110.57456 * 56.54490 * 15 14 13 17 17 C 1.36704 * 105.37637 * 214.43346 * 16 15 14 18 18 C 1.38544 * 131.46918 * 197.19774 * 17 16 15 19 19 C 1.38238 * 120.03283 * 179.83970 * 18 17 16 20 20 C 1.38255 * 120.13743 * 0.02562 * 19 18 17 21 21 C 1.38236 * 120.14948 * 0.05530 * 20 19 18 22 22 C 1.38549 * 120.02660 * 359.90526 * 21 20 19 23 23 O 1.36495 * 131.53749 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47589 * 305.11756 * 1 2 3 25 25 H 1.08995 * 109.46957 * 65.12274 * 1 2 3 26 26 H 1.09002 * 109.46460 * 185.11363 * 1 2 3 27 27 H 1.09001 * 109.46886 * 119.99996 * 2 1 3 28 28 H 1.09000 * 109.47100 * 240.00019 * 2 1 3 29 29 H 0.97007 * 120.00079 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00122 * 15.62436 * 13 3 2 31 31 H 1.08997 * 109.47324 * 303.71258 * 14 13 3 32 32 H 1.09005 * 109.47134 * 63.71155 * 14 13 3 33 33 H 1.09004 * 110.50733 * 179.30220 * 15 14 13 34 34 H 1.08000 * 119.98408 * 359.87031 * 18 17 16 35 35 H 1.07998 * 119.93095 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.92696 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.98724 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9842 -0.8359 5 6 3.5406 1.4448 -0.1378 6 1 4.1567 1.8072 0.6718 7 6 4.1271 0.9843 -1.2975 8 7 5.4030 0.6655 -1.3074 9 14 3.1096 0.8133 -2.8546 10 1 3.1028 2.1056 -3.5861 11 1 3.6994 -0.2412 -3.7181 12 1 1.7174 0.4392 -2.4976 13 7 1.6630 2.0952 1.2609 14 6 0.6021 3.0877 1.0434 15 6 0.3017 3.8096 2.3585 16 8 1.4961 4.4150 2.8877 17 6 1.3799 4.3187 4.2463 18 6 2.0371 4.9781 5.2724 19 6 1.7255 4.6938 6.5889 20 6 0.7585 3.7512 6.8854 21 6 0.0999 3.0881 5.8668 22 6 0.4065 3.3685 4.5451 23 8 -0.0865 2.8664 3.3754 24 1 -0.3634 0.5911 0.8405 25 1 -0.3633 0.4323 -0.9323 26 1 -0.3632 -1.0236 0.0916 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.8157 0.3418 -2.1234 30 1 1.3850 1.4141 1.9515 31 1 0.9295 3.8121 0.2977 32 1 -0.2987 2.5853 0.6908 33 1 -0.4759 4.5596 2.2134 34 1 2.7928 5.7149 5.0436 35 1 2.2385 5.2091 7.3874 36 1 0.5175 3.5321 7.9151 37 1 -0.6553 2.3526 6.1014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:05 Heat of formation + Delta-G solvation = -29.599349 kcal Electronic energy + Delta-G solvation = -19946.989619 eV Core-core repulsion = 16883.625372 eV Total energy + Delta-G solvation = -3063.364247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.96945 -37.87731 -36.62934 -35.98221 -32.66963 -31.63392 -30.56911 -29.64242 -28.03402 -26.10119 -22.86332 -22.70885 -22.62051 -21.60835 -19.95735 -18.01380 -17.66376 -17.17778 -16.74815 -15.60488 -15.10940 -14.59630 -14.42044 -14.11324 -13.94747 -13.68651 -13.51818 -12.92821 -12.76688 -12.64513 -12.45331 -12.24375 -11.95161 -11.74879 -11.54512 -11.09587 -10.99310 -10.82227 -10.57139 -10.33526 -9.92532 -9.51565 -9.32374 -8.83933 -8.35195 -7.91207 -7.35483 -6.03020 -3.93330 1.23718 1.27264 2.94264 3.29167 3.37752 3.39721 3.55051 3.65613 4.45822 4.58503 4.61613 4.77661 4.96250 5.12480 5.22229 5.23354 5.30313 5.42990 5.65012 5.67477 5.82613 5.86845 5.95018 6.01750 6.12823 6.20162 6.34885 6.36507 6.49265 6.50442 6.55662 6.73692 6.85368 7.19008 7.31792 7.78312 7.90805 8.30150 8.75379 9.17372 9.63998 11.10629 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.005097 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.122098 B = 5491.597677 C = 5890.979484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.020 0.980 5 C -0.498 4.498 6 H 0.081 0.919 7 C 0.072 3.928 8 N -0.893 5.893 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.258 1.258 13 N -0.662 5.662 14 C 0.053 3.947 15 C 0.242 3.758 16 O -0.278 6.278 17 C 0.045 3.955 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.106 4.106 22 C 0.033 3.967 23 O -0.304 6.304 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.262 0.738 30 H 0.333 0.667 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.945 6.682 12.500 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C 0.086 3.914 4 H 0.038 0.962 5 C -0.536 4.536 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.531 5.531 9 Si 0.685 3.315 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.182 1.182 13 N -0.293 5.293 14 C -0.077 4.077 15 C 0.149 3.851 16 O -0.194 6.194 17 C 0.000 4.000 18 C -0.127 4.127 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.011 4.011 23 O -0.220 6.220 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.151 0.849 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.232 6.967 12.121 18.576 hybrid contribution -1.230 -0.754 -1.352 1.977 sum -13.462 6.213 10.769 18.325 Atomic orbital electron populations 1.21957 0.98552 1.00385 1.00515 1.22549 0.92644 1.01350 1.02157 1.19570 0.96925 0.88429 0.86483 0.96238 1.20982 0.89050 1.41244 1.02332 0.90134 1.24897 0.94735 0.94725 0.98609 1.69990 1.11914 1.43481 1.27716 0.87290 0.81777 0.77932 0.84493 1.20599 1.21515 1.18228 1.60543 1.37545 1.19096 1.12148 1.22376 0.95573 0.97246 0.92528 1.25385 0.83855 0.86377 0.89470 1.87622 1.40935 1.76363 1.14437 1.20015 0.97327 0.97856 0.84807 1.20094 1.01609 1.00995 0.90006 1.20860 0.98443 0.98753 0.95128 1.20829 0.97128 0.97350 0.98557 1.20034 1.02155 1.02400 0.87887 1.19864 0.96915 0.95742 0.88619 1.87382 1.74066 1.46235 1.14365 0.93506 0.93700 0.93798 0.92258 0.91897 0.92821 0.84927 0.88442 0.93229 0.89107 0.84926 0.84914 0.84972 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.44 37.16 0.35 -2.40 16 2 C -0.15 -3.18 4.56 -26.73 -0.12 -3.30 16 3 C 0.19 4.57 1.73 -68.87 -0.12 4.45 16 4 H 0.02 0.47 6.15 -51.93 -0.32 0.15 16 5 C -0.50 -14.26 9.25 -34.44 -0.32 -14.58 16 6 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 7 C 0.07 2.09 5.30 -17.82 -0.09 1.99 16 8 N -0.89 -27.60 13.96 55.43 0.77 -26.83 16 9 Si 0.86 21.17 25.86 -169.99 -4.40 16.77 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -5.93 5.65 56.52 0.32 -5.61 16 13 N -0.66 -13.97 5.87 -107.96 -0.63 -14.60 16 14 C 0.05 0.91 5.33 -3.83 -0.02 0.89 16 15 C 0.24 3.77 4.53 37.16 0.17 3.94 16 16 O -0.28 -4.97 10.95 -46.35 -0.51 -5.48 16 17 C 0.05 0.72 7.15 -39.08 -0.28 0.44 16 18 C -0.11 -1.40 10.06 -39.47 -0.40 -1.80 16 19 C -0.11 -1.18 10.04 -39.58 -0.40 -1.58 16 20 C -0.12 -1.22 10.04 -39.58 -0.40 -1.61 16 21 C -0.11 -1.28 10.06 -39.47 -0.40 -1.68 16 22 C 0.03 0.51 7.15 -39.08 -0.28 0.23 16 23 O -0.30 -4.91 10.50 -45.66 -0.48 -5.39 16 24 H 0.05 0.77 5.97 -51.93 -0.31 0.46 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.28 8.06 -51.93 -0.42 0.87 16 28 H 0.06 1.44 5.17 -51.93 -0.27 1.17 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.33 6.85 7.15 -39.29 -0.28 6.57 16 31 H 0.10 1.66 8.06 -51.93 -0.42 1.25 16 32 H 0.05 0.77 6.60 -51.93 -0.34 0.42 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -32.22 301.82 -7.96 -40.17 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.96 Total: 5.82 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.30 Total: -15.02 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.14 Total: -41.43 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.99 Total: -10.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.40 Total: 16.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.22 -7.96 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.573 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds