Wall clock time and date at job start Sun Mar 29 2020 23:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46685 * 2 1 4 4 H 1.08992 * 109.46821 * 305.56386 * 3 2 1 5 5 C 1.50697 * 109.46676 * 185.56567 * 3 2 1 6 6 H 1.08001 * 120.00023 * 245.40408 * 5 3 2 7 7 C 1.37877 * 120.00271 * 65.40730 * 5 3 2 8 8 N 1.31509 * 120.00007 * 197.21313 * 7 5 3 9 9 Si 1.86796 * 119.99811 * 17.21668 * 7 5 3 10 10 H 1.48498 * 109.47534 * 86.84185 * 9 7 5 11 11 H 1.48506 * 109.47014 * 206.84086 * 9 7 5 12 12 H 1.48504 * 109.47060 * 326.83709 * 9 7 5 13 13 N 1.46895 * 109.47122 * 65.56502 * 3 2 1 14 14 C 1.46899 * 111.00160 * 251.66630 * 13 3 2 15 15 C 1.52998 * 109.47136 * 183.70764 * 14 13 3 16 16 O 1.43986 * 110.57456 * 56.54490 * 15 14 13 17 17 C 1.36704 * 105.37637 * 214.43346 * 16 15 14 18 18 C 1.38544 * 131.46918 * 197.19774 * 17 16 15 19 19 C 1.38238 * 120.03283 * 179.83970 * 18 17 16 20 20 C 1.38255 * 120.13743 * 0.02562 * 19 18 17 21 21 C 1.38236 * 120.14948 * 0.05530 * 20 19 18 22 22 C 1.38549 * 120.02660 * 359.90526 * 21 20 19 23 23 O 1.36495 * 131.53749 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47589 * 305.11756 * 1 2 3 25 25 H 1.08995 * 109.46957 * 65.12274 * 1 2 3 26 26 H 1.09002 * 109.46460 * 185.11363 * 1 2 3 27 27 H 1.09001 * 109.46886 * 119.99996 * 2 1 3 28 28 H 1.09000 * 109.47100 * 240.00019 * 2 1 3 29 29 H 0.97007 * 120.00079 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00122 * 15.62436 * 13 3 2 31 31 H 1.08997 * 109.47324 * 303.71258 * 14 13 3 32 32 H 1.09005 * 109.47134 * 63.71155 * 14 13 3 33 33 H 1.09004 * 110.50733 * 179.30220 * 15 14 13 34 34 H 1.08000 * 119.98408 * 359.87031 * 18 17 16 35 35 H 1.07998 * 119.93095 * 180.02562 * 19 18 17 36 36 H 1.08004 * 119.92696 * 180.02562 * 20 19 18 37 37 H 1.07998 * 119.98724 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9842 -0.8359 5 6 3.5406 1.4448 -0.1378 6 1 4.1567 1.8072 0.6718 7 6 4.1271 0.9843 -1.2975 8 7 5.4030 0.6655 -1.3074 9 14 3.1096 0.8133 -2.8546 10 1 3.1028 2.1056 -3.5861 11 1 3.6994 -0.2412 -3.7181 12 1 1.7174 0.4392 -2.4976 13 7 1.6630 2.0952 1.2609 14 6 0.6021 3.0877 1.0434 15 6 0.3017 3.8096 2.3585 16 8 1.4961 4.4150 2.8877 17 6 1.3799 4.3187 4.2463 18 6 2.0371 4.9781 5.2724 19 6 1.7255 4.6938 6.5889 20 6 0.7585 3.7512 6.8854 21 6 0.0999 3.0881 5.8668 22 6 0.4065 3.3685 4.5451 23 8 -0.0865 2.8664 3.3754 24 1 -0.3634 0.5911 0.8405 25 1 -0.3633 0.4323 -0.9323 26 1 -0.3632 -1.0236 0.0916 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 5.8157 0.3418 -2.1234 30 1 1.3850 1.4141 1.9515 31 1 0.9295 3.8121 0.2977 32 1 -0.2987 2.5853 0.6908 33 1 -0.4759 4.5596 2.2134 34 1 2.7928 5.7149 5.0436 35 1 2.2385 5.2091 7.3874 36 1 0.5175 3.5321 7.9151 37 1 -0.6553 2.3526 6.1014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:04 Heat of formation + Delta-G solvation = -52.499229 kcal Electronic energy + Delta-G solvation = -19947.982632 eV Core-core repulsion = 16883.625372 eV Total energy + Delta-G solvation = -3064.357260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.06148 -38.96770 -38.19336 -37.13700 -34.61624 -33.32418 -31.50413 -30.85659 -29.56471 -27.74397 -24.46164 -23.78143 -23.70529 -22.94114 -21.76322 -19.02961 -18.89969 -18.75324 -18.23255 -16.95798 -16.76785 -16.05194 -15.78794 -15.37947 -15.25507 -14.80715 -14.73775 -14.58637 -14.11645 -14.03076 -13.82608 -13.56299 -13.37291 -13.17201 -12.90095 -12.66822 -12.49302 -12.33779 -11.94417 -11.82749 -11.64409 -11.40396 -11.30626 -10.54518 -9.78934 -9.04850 -8.92665 -8.27708 -6.23655 0.27687 0.32402 1.33798 1.36557 1.45841 1.88151 2.36093 2.46022 2.71929 3.03874 3.25247 3.61106 3.64368 3.95885 4.13116 4.22136 4.27009 4.31982 4.38495 4.42463 4.46362 4.52431 4.56325 4.72690 4.79450 5.03822 5.12313 5.17099 5.19648 5.24495 5.43093 5.47394 5.48889 5.63863 5.72992 6.00980 6.26147 6.62303 6.74075 6.81081 7.38300 8.90405 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.005097 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.122098 B = 5491.597677 C = 5890.979484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.201 3.799 4 H 0.026 0.974 5 C -0.509 4.509 6 H 0.023 0.977 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.931 3.069 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.226 1.226 13 N -0.681 5.681 14 C 0.053 3.947 15 C 0.242 3.758 16 O -0.314 6.314 17 C 0.005 3.995 18 C -0.121 4.121 19 C -0.105 4.105 20 C -0.109 4.109 21 C -0.109 4.109 22 C 0.005 3.995 23 O -0.317 6.317 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.264 0.736 30 H 0.334 0.666 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.138 0.862 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.864 6.729 13.469 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.092 3.908 4 H 0.044 0.956 5 C -0.547 4.547 6 H 0.041 0.959 7 C -0.184 4.184 8 N -0.587 5.587 9 Si 0.755 3.245 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.149 1.149 13 N -0.312 5.312 14 C -0.077 4.077 15 C 0.150 3.850 16 O -0.230 6.230 17 C -0.039 4.039 18 C -0.140 4.140 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.039 4.039 23 O -0.234 6.234 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.184 7.027 13.120 21.261 hybrid contribution -0.226 -0.708 -1.420 1.603 sum -15.409 6.319 11.700 20.353 Atomic orbital electron populations 1.21849 0.94766 1.02235 1.01525 1.22390 0.95937 0.99143 1.00993 1.19352 0.93416 0.90227 0.87825 0.95572 1.21261 0.91844 1.40732 1.00897 0.95910 1.25807 0.95963 0.94251 1.02378 1.70152 1.14377 1.45301 1.28836 0.86111 0.81392 0.78004 0.79037 1.20063 1.21398 1.14884 1.60302 1.40251 1.19542 1.11145 1.22456 0.95181 0.96268 0.93808 1.25493 0.84184 0.86775 0.88598 1.87544 1.42367 1.77057 1.16040 1.20437 0.99252 0.99852 0.84384 1.20483 1.01627 1.01136 0.90767 1.21347 0.97978 0.98275 0.94706 1.21367 0.95582 0.95728 0.99953 1.20489 1.02570 1.02699 0.87015 1.20242 0.97738 0.96608 0.89314 1.87309 1.74267 1.46859 1.14942 0.92489 0.92663 0.91586 0.93424 0.93224 0.92704 0.84830 0.88834 0.90752 0.85859 0.84409 0.81291 0.80933 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.44 71.98 0.68 -3.97 16 2 C -0.15 -6.10 4.56 30.60 0.14 -5.96 16 3 C 0.20 9.46 1.73 44.17 0.08 9.54 16 4 H 0.03 1.21 6.15 -2.39 -0.01 1.19 16 5 C -0.51 -30.43 9.25 25.60 0.24 -30.19 16 6 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 7 C 0.01 0.78 5.30 84.66 0.45 1.23 16 8 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 9 Si 0.93 43.92 25.86 68.60 1.77 45.70 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.23 -9.44 5.65 99.48 0.56 -8.87 16 13 N -0.68 -29.15 5.87 -495.47 -2.91 -32.05 16 14 C 0.05 1.76 5.33 86.30 0.46 2.22 16 15 C 0.24 7.50 4.53 71.98 0.33 7.82 16 16 O -0.31 -11.60 10.95 -78.48 -0.86 -12.46 16 17 C 0.01 0.16 7.15 22.59 0.16 0.33 16 18 C -0.12 -3.08 10.06 22.34 0.22 -2.86 16 19 C -0.11 -1.89 10.04 22.27 0.22 -1.66 16 20 C -0.11 -1.81 10.04 22.27 0.22 -1.59 16 21 C -0.11 -2.41 10.06 22.34 0.22 -2.19 16 22 C 0.01 0.15 7.15 22.59 0.16 0.32 16 23 O -0.32 -10.10 10.50 -76.01 -0.80 -10.90 16 24 H 0.06 1.69 5.97 -2.39 -0.01 1.68 16 25 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.05 2.06 8.06 -2.39 -0.02 2.04 16 28 H 0.05 2.19 5.17 -2.39 -0.01 2.17 16 29 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 30 H 0.33 13.94 7.15 -89.69 -0.64 13.30 16 31 H 0.09 3.17 8.06 -2.39 -0.02 3.15 16 32 H 0.07 2.12 6.60 -2.38 -0.02 2.10 16 33 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -74.79 301.82 1.39 -73.40 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.29 Total: 23.94 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 3.59 Total: -26.97 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -2.61 Total: -92.70 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -1.66 Total: -23.36 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.77 Total: 45.70 kcal Total: -74.79 1.39 -73.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.902 kcal (2) G-P(sol) polarization free energy of solvation -74.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds