Wall clock time and date at job start Sun Mar 29 2020 23:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47298 * 2 1 4 4 H 1.09000 * 109.47326 * 175.06852 * 3 2 1 5 5 C 1.50704 * 109.47314 * 55.06678 * 3 2 1 6 6 H 1.07994 * 119.99892 * 245.70247 * 5 3 2 7 7 C 1.37880 * 119.99622 * 65.69368 * 5 3 2 8 8 N 1.31518 * 120.00323 * 5.50665 * 7 5 3 9 9 Si 1.86799 * 119.99866 * 185.49859 * 7 5 3 10 10 H 1.48502 * 109.47320 * 270.00788 * 9 7 5 11 11 H 1.48504 * 109.46927 * 30.00484 * 9 7 5 12 12 H 1.48497 * 109.47087 * 150.00305 * 9 7 5 13 13 N 1.46898 * 109.47010 * 295.06521 * 3 2 1 14 14 C 1.46896 * 111.00210 * 279.82797 * 13 3 2 15 15 C 1.50701 * 109.46955 * 185.03661 * 14 13 3 16 16 O 1.21292 * 120.00386 * 0.02562 * 15 14 13 17 17 C 1.46866 * 119.99827 * 179.97438 * 15 14 13 18 18 C 1.40042 * 120.11224 * 359.73251 * 17 15 14 19 19 C 1.37120 * 119.87890 * 179.73757 * 18 17 15 20 20 C 1.39082 * 120.11294 * 0.53573 * 19 18 17 21 21 O 1.35660 * 119.87802 * 179.69711 * 20 19 18 22 22 C 1.39075 * 120.23400 * 359.71318 * 20 19 18 23 23 C 1.37117 * 120.11389 * 0.02697 * 22 20 19 24 24 H 1.09003 * 109.47195 * 305.00917 * 1 2 3 25 25 H 1.09001 * 109.46918 * 65.00738 * 1 2 3 26 26 H 1.09003 * 109.46867 * 185.00994 * 1 2 3 27 27 H 1.09002 * 109.47415 * 239.99527 * 2 1 3 28 28 H 1.09002 * 109.47178 * 120.00207 * 2 1 3 29 29 H 0.97001 * 119.99602 * 355.14063 * 8 7 5 30 30 H 1.00904 * 111.00170 * 43.78398 * 13 3 2 31 31 H 1.09000 * 109.47310 * 305.03674 * 14 13 3 32 32 H 1.08997 * 109.47024 * 65.04004 * 14 13 3 33 33 H 1.08000 * 120.05683 * 359.96971 * 18 17 15 34 34 H 1.08002 * 119.94064 * 180.24666 * 19 18 17 35 35 H 0.96696 * 114.00451 * 270.01378 * 21 20 19 36 36 H 1.07994 * 119.94177 * 180.02562 * 22 20 19 37 37 H 1.08001 * 120.05781 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0883 5 6 1.4405 2.1873 1.1648 6 1 0.7570 3.0048 0.9889 7 6 1.7644 1.8250 2.4551 8 7 2.6775 0.9031 2.6698 9 14 0.9066 2.6437 3.8984 10 1 1.6704 3.8491 4.3094 11 1 -0.4669 3.0411 3.4972 12 1 0.8341 1.6919 5.0359 13 7 1.6501 2.0997 -1.2545 14 6 2.5596 1.7301 -2.3473 15 6 2.2049 2.5158 -3.5834 16 8 1.2852 3.3062 -3.5566 17 6 2.9735 2.3252 -4.8203 18 6 4.0400 1.4182 -4.8521 19 6 4.7509 1.2400 -6.0109 20 6 4.4215 1.9665 -7.1503 21 8 5.1321 1.7910 -8.2926 22 6 3.3666 2.8723 -7.1226 23 6 2.6459 3.0540 -5.9703 24 1 -0.3634 0.5896 0.8417 25 1 -0.3633 0.4342 -0.9315 26 1 -0.3633 -1.0238 0.0897 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.0723 0.4281 1.9218 30 1 0.6931 1.8858 -1.4926 31 1 3.5861 1.9536 -2.0569 32 1 2.4643 0.6643 -2.5545 33 1 4.2996 0.8572 -3.9664 34 1 5.5711 0.5378 -6.0377 35 1 5.8942 2.3802 -8.3762 36 1 3.1147 3.4336 -8.0102 37 1 1.8272 3.7580 -5.9497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:06 Heat of formation + Delta-G solvation = -80.134166 kcal Electronic energy + Delta-G solvation = -19172.535566 eV Core-core repulsion = 16106.979965 eV Total energy + Delta-G solvation = -3065.555601 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26442 -39.99317 -38.37004 -37.46293 -34.65807 -32.77040 -32.12410 -31.37590 -28.74111 -26.64388 -25.49013 -24.27906 -23.51533 -21.48672 -20.92110 -19.49140 -18.99008 -17.77484 -17.32294 -16.65762 -16.41137 -15.93476 -15.87248 -15.57299 -15.23306 -15.05177 -14.86444 -14.57407 -14.09206 -13.76148 -13.56703 -13.42080 -13.09773 -13.05900 -12.94053 -12.61690 -12.10979 -11.95250 -11.91404 -11.69232 -11.48715 -10.92162 -10.56329 -10.31730 -10.16492 -9.74636 -9.07576 -8.49973 -6.19819 -0.48532 0.30628 1.31228 1.55786 1.63072 1.81281 2.58853 2.63438 2.84006 3.18441 3.26242 3.63681 3.75527 3.90546 4.16655 4.24973 4.26873 4.31769 4.40542 4.42220 4.46255 4.55698 4.70645 4.91545 4.95148 5.07432 5.15771 5.20555 5.27794 5.32743 5.38951 5.54872 5.68208 5.94068 6.21175 6.46997 6.55138 6.68568 6.78349 6.81378 7.54448 8.87519 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038154 B = 0.003749 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.687022 B = 7466.192109 C = 7626.439918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.208 3.792 4 H 0.005 0.995 5 C -0.579 4.579 6 H 0.039 0.961 7 C -0.025 4.025 8 N -0.940 5.940 9 Si 1.109 2.891 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.284 1.284 13 N -0.681 5.681 14 C 0.012 3.988 15 C 0.399 3.601 16 O -0.478 6.478 17 C -0.194 4.194 18 C -0.052 4.052 19 C -0.160 4.160 20 C 0.143 3.857 21 O -0.505 6.505 22 C -0.161 4.161 23 C -0.054 4.054 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.262 0.738 30 H 0.335 0.665 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.418 0.582 36 H 0.153 0.847 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 -0.452 -19.903 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.186 4.186 3 C 0.099 3.901 4 H 0.023 0.977 5 C -0.618 4.618 6 H 0.057 0.943 7 C -0.223 4.223 8 N -0.579 5.579 9 Si 0.933 3.067 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.209 1.209 13 N -0.312 5.312 14 C -0.118 4.118 15 C 0.278 3.722 16 O -0.354 6.354 17 C -0.195 4.195 18 C -0.070 4.070 19 C -0.178 4.178 20 C 0.098 3.902 21 O -0.320 6.320 22 C -0.180 4.180 23 C -0.072 4.072 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.154 0.846 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.176 0.824 35 H 0.279 0.721 36 H 0.171 0.829 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.714 0.215 -18.223 18.824 hybrid contribution 0.221 -0.648 -1.544 1.689 sum 4.935 -0.432 -19.766 20.378 Atomic orbital electron populations 1.21522 0.95526 1.00287 1.01103 1.22131 0.97284 0.99669 0.99467 1.19179 0.93994 0.89542 0.87369 0.97699 1.22083 1.29509 1.17696 0.92465 0.94299 1.26885 0.95769 0.97084 1.02610 1.70886 1.25950 1.25684 1.35338 0.83009 0.75477 0.75250 0.72971 1.20613 1.20136 1.20924 1.60409 1.05731 1.62807 1.02257 1.22347 0.99721 0.98699 0.91017 1.22737 0.81228 0.79541 0.88653 1.90494 1.27808 1.31288 1.85820 1.20517 1.00800 1.03036 0.95186 1.21445 0.91870 0.94535 0.99163 1.21543 1.02437 1.02250 0.91541 1.18893 0.92354 0.93360 0.85577 1.84676 1.45887 1.64421 1.36967 1.21458 0.97509 1.00043 0.98944 1.21248 0.98029 0.96489 0.91471 0.93473 0.93428 0.92910 0.93382 0.93814 0.92741 0.84598 0.87650 0.90652 0.83226 0.82449 0.72058 0.82919 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.16 9.38 71.98 0.68 -4.49 16 2 C -0.15 -6.39 5.45 30.59 0.17 -6.23 16 3 C 0.21 10.18 1.95 44.17 0.09 10.26 16 4 H 0.01 0.27 7.32 -2.39 -0.02 0.26 16 5 C -0.58 -32.33 7.19 25.60 0.18 -32.15 16 6 H 0.04 2.27 7.82 -2.91 -0.02 2.24 16 7 C -0.03 -1.42 5.29 84.65 0.45 -0.97 16 8 N -0.94 -55.55 13.21 21.45 0.28 -55.26 16 9 Si 1.11 50.98 29.91 68.60 2.05 53.04 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 N -0.68 -29.61 5.76 -499.48 -2.87 -32.49 16 14 C 0.01 0.40 4.56 85.56 0.39 0.79 16 15 C 0.40 12.95 7.16 27.95 0.20 13.15 16 16 O -0.48 -18.86 16.30 -3.07 -0.05 -18.91 16 17 C -0.19 -4.89 5.87 -20.15 -0.12 -5.01 16 18 C -0.05 -1.02 9.44 22.44 0.21 -0.81 16 19 C -0.16 -2.59 9.95 22.21 0.22 -2.37 16 20 C 0.14 2.33 6.71 22.67 0.15 2.48 16 21 O -0.50 -6.30 13.48 -89.76 -1.21 -7.51 16 22 C -0.16 -2.85 9.95 22.21 0.22 -2.63 16 23 C -0.05 -1.23 9.57 22.44 0.21 -1.02 16 24 H 0.05 2.16 6.89 -2.39 -0.02 2.14 16 25 H 0.05 1.77 6.68 -2.39 -0.02 1.75 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 1.82 7.13 -2.39 -0.02 1.80 16 28 H 0.04 2.14 6.17 -2.39 -0.01 2.12 16 29 H 0.26 15.34 5.62 -92.71 -0.52 14.82 16 30 H 0.34 14.48 6.63 -89.69 -0.59 13.89 16 31 H 0.11 3.39 7.88 -2.39 -0.02 3.37 16 32 H 0.08 2.20 7.14 -2.39 -0.02 2.19 16 33 H 0.15 2.52 7.04 -2.91 -0.02 2.50 16 34 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 35 H 0.42 0.97 9.06 -74.06 -0.67 0.30 16 36 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.13 3.09 7.64 -2.91 -0.02 3.07 16 Total: -1.00 -70.51 309.69 1.34 -69.17 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.09 Total: 20.96 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 3.05 Total: -28.99 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -2.59 Total: -87.75 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.26 Total: -26.43 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.04 kcal Total: -70.51 1.34 -69.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.964 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds