Wall clock time and date at job start Sun Mar 29 2020 23:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47333 * 2 1 4 4 O 1.42906 * 109.47039 * 119.99848 * 2 1 3 5 5 C 1.35901 * 116.99494 * 59.22069 * 4 2 1 6 6 C 1.38736 * 120.04994 * 185.95079 * 5 4 2 7 7 C 1.38153 * 119.94163 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.05218 * 359.97106 * 7 6 5 9 9 C 1.38265 * 120.11812 * 0.04632 * 8 7 6 10 10 C 1.38146 * 120.05264 * 359.95958 * 9 8 7 11 11 C 1.50693 * 109.47196 * 239.99657 * 2 1 3 12 12 O 1.21282 * 120.00210 * 240.00616 * 11 2 1 13 13 N 1.34783 * 120.00181 * 60.00102 * 11 2 1 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 2 15 15 C 1.50695 * 109.47206 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99958 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99985 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99970 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47126 * 89.99710 * 19 17 15 21 21 H 1.48502 * 109.47017 * 209.99726 * 19 17 15 22 22 H 1.48503 * 109.47027 * 329.99571 * 19 17 15 23 23 H 1.09003 * 109.46911 * 311.38979 * 1 2 3 24 24 H 1.08999 * 109.46643 * 71.37989 * 1 2 3 25 25 H 1.08996 * 109.47677 * 191.38176 * 1 2 3 26 26 H 1.08996 * 109.46796 * 175.27041 * 3 2 1 27 27 H 1.08996 * 109.46847 * 295.27296 * 3 2 1 28 28 H 1.08999 * 109.47129 * 55.27341 * 3 2 1 29 29 H 1.08001 * 120.02828 * 359.69660 * 6 5 4 30 30 H 1.08000 * 119.97019 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.93800 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.97386 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.02946 * 180.02562 * 10 9 8 34 34 H 0.97007 * 119.99516 * 0.02562 * 13 11 2 35 35 H 1.09004 * 109.46897 * 300.00060 * 14 13 11 36 36 H 1.08997 * 109.47106 * 60.00068 * 14 13 11 37 37 H 0.97009 * 119.99823 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 1.6277 -1.9687 1.3292 6 6 1.9496 -2.6454 2.4968 7 6 1.5631 -3.9618 2.6597 8 6 0.8556 -4.6044 1.6607 9 6 0.5339 -3.9323 0.4960 10 6 0.9181 -2.6160 0.3282 11 6 2.0323 -0.7104 -1.2304 12 8 2.7295 -1.6966 -1.1191 13 7 1.7068 -0.2501 -2.4546 14 6 2.1946 -0.9410 -3.6507 15 6 1.6930 -0.2302 -4.8812 16 1 1.0724 0.6481 -4.7821 17 6 2.0253 -0.7019 -6.1334 18 7 2.7806 -1.7717 -6.2540 19 14 1.4028 0.1788 -7.6587 20 1 2.3816 1.2197 -8.0634 21 1 1.2368 -0.8005 -8.7626 22 1 0.0952 0.8173 -7.3626 23 1 -0.3633 0.6795 0.7710 24 1 -0.3632 0.3281 -0.9739 25 1 -0.3634 -1.0074 0.2028 26 1 3.1267 1.4436 0.0847 27 1 1.7475 1.9313 -0.9293 28 1 1.6093 1.9802 0.8446 29 1 2.5058 -2.1450 3.2757 30 1 1.8139 -4.4891 3.5683 31 1 0.5541 -5.6333 1.7902 32 1 -0.0185 -4.4367 -0.2830 33 1 0.6663 -2.0912 -0.5815 34 1 1.1494 0.5389 -2.5436 35 1 3.2847 -0.9415 -3.6508 36 1 1.8309 -1.9685 -3.6505 37 1 3.0141 -2.1037 -7.1351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326698975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:37 Heat of formation + Delta-G solvation = -42.257028 kcal Electronic energy + Delta-G solvation = -20117.458924 eV Core-core repulsion = 17053.545799 eV Total energy + Delta-G solvation = -3063.913125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01799 -38.45818 -37.01882 -34.44191 -33.42856 -32.09674 -30.73474 -29.61717 -27.34664 -27.30776 -23.92337 -22.84822 -22.20707 -21.44822 -19.58661 -18.32359 -16.74302 -16.35568 -15.90799 -15.62435 -15.05073 -14.83212 -14.51334 -14.12010 -13.79203 -13.55203 -13.17601 -12.95115 -12.64651 -12.31604 -12.17908 -12.14506 -11.96054 -11.81690 -11.67940 -11.31314 -11.03749 -10.95912 -10.72118 -10.53549 -10.36517 -9.46730 -9.13271 -8.82451 -8.66630 -8.02180 -7.76891 -6.21849 -4.29628 1.60466 1.70527 3.07996 3.20613 3.26540 3.28604 3.30122 3.80772 4.04751 4.29803 4.73167 4.85201 5.10670 5.12335 5.14464 5.14723 5.32570 5.46453 5.49077 5.58112 5.62098 5.69346 5.76448 5.91294 6.03085 6.09568 6.22510 6.55192 6.66222 6.76815 6.96940 7.20395 7.29462 7.43389 7.54408 7.62708 7.89773 8.47413 8.68162 8.93480 9.37040 10.88183 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.005075 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.091592 B = 5515.918749 C = 6117.137524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.093 3.907 3 C -0.134 4.134 4 O -0.291 6.291 5 C 0.144 3.856 6 C -0.159 4.159 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.088 4.088 10 C -0.174 4.174 11 C 0.475 3.525 12 O -0.532 6.532 13 N -0.704 5.704 14 C 0.250 3.750 15 C -0.545 4.545 16 H 0.063 0.937 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.390 0.610 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.002 2.442 14.767 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.051 3.949 3 C -0.191 4.191 4 O -0.204 6.204 5 C 0.099 3.901 6 C -0.177 4.177 7 C -0.110 4.110 8 C -0.180 4.180 9 C -0.106 4.106 10 C -0.192 4.192 11 C 0.258 3.742 12 O -0.410 6.410 13 N -0.354 5.354 14 C 0.129 3.871 15 C -0.583 4.583 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.224 0.776 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.277 1.720 14.795 15.802 hybrid contribution -0.524 0.669 -1.290 1.544 sum -5.801 2.389 13.505 14.891 Atomic orbital electron populations 1.22777 0.93100 1.04908 1.04150 1.21846 0.94976 0.93626 0.84444 1.21781 1.03015 0.90740 1.03603 1.86115 1.70399 1.22362 1.41542 1.18822 0.93796 0.83620 0.93873 1.20316 1.05585 0.95150 0.96671 1.20817 0.97720 0.93630 0.98863 1.20962 1.02342 0.99977 0.94767 1.20955 0.98678 0.93860 0.97125 1.21573 1.02147 0.96693 0.98799 1.20812 0.82258 0.85659 0.85445 1.90777 1.38035 1.25822 1.86318 1.46532 1.51515 1.31080 1.06320 1.19149 0.95443 0.92851 0.79627 1.21189 1.33455 1.13202 0.90484 0.91867 1.24948 0.94786 0.94933 0.99252 1.69974 1.35564 1.22307 1.24285 0.86413 0.79176 0.79284 0.82029 1.20415 1.20970 1.19716 0.90602 0.90110 0.89923 0.90858 0.89700 0.90691 0.85722 0.85904 0.86413 0.86133 0.85081 0.77634 0.95405 0.95434 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.14 37.16 0.30 -2.12 16 2 C 0.09 1.43 0.96 -91.77 -0.09 1.35 16 3 C -0.13 -1.64 8.77 37.16 0.33 -1.32 16 4 O -0.29 -4.95 9.63 -39.34 -0.38 -5.33 16 5 C 0.14 2.47 5.53 -39.22 -0.22 2.26 16 6 C -0.16 -2.37 9.99 -39.43 -0.39 -2.76 16 7 C -0.09 -1.22 10.04 -39.60 -0.40 -1.62 16 8 C -0.16 -2.22 10.04 -39.56 -0.40 -2.62 16 9 C -0.09 -1.38 10.04 -39.61 -0.40 -1.78 16 10 C -0.17 -3.05 5.52 -39.43 -0.22 -3.27 16 11 C 0.47 9.47 4.56 -10.99 -0.05 9.42 16 12 O -0.53 -12.91 13.79 -14.35 -0.20 -13.10 16 13 N -0.70 -14.32 5.22 -61.48 -0.32 -14.64 16 14 C 0.25 6.47 5.43 -5.20 -0.03 6.44 16 15 C -0.55 -14.41 9.28 -34.44 -0.32 -14.73 16 16 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.88 -25.74 13.29 55.43 0.74 -25.01 16 19 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 23 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 24 H 0.08 0.93 7.28 -51.93 -0.38 0.56 16 25 H 0.08 1.12 4.85 -51.93 -0.25 0.87 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 0.92 7.43 -51.93 -0.39 0.54 16 28 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.13 2.44 3.84 -52.49 -0.20 2.24 16 34 H 0.39 6.69 7.01 -40.82 -0.29 6.41 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 305.69 15.07 4.61 4.61 Total: -1.00 -32.32 305.69 -7.39 -39.71 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.84 Total: 7.39 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.98 Total: -9.07 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.42 Total: -39.64 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.58 Total: -18.44 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.32 -7.39 -39.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326698975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.549 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds