Wall clock time and date at job start Sun Mar 29 2020 23:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47333 * 2 1 4 4 O 1.42906 * 109.47039 * 119.99848 * 2 1 3 5 5 C 1.35901 * 116.99494 * 59.22069 * 4 2 1 6 6 C 1.38736 * 120.04994 * 185.95079 * 5 4 2 7 7 C 1.38153 * 119.94163 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.05218 * 359.97106 * 7 6 5 9 9 C 1.38265 * 120.11812 * 0.04632 * 8 7 6 10 10 C 1.38146 * 120.05264 * 359.95958 * 9 8 7 11 11 C 1.50693 * 109.47196 * 239.99657 * 2 1 3 12 12 O 1.21282 * 120.00210 * 240.00616 * 11 2 1 13 13 N 1.34783 * 120.00181 * 60.00102 * 11 2 1 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 2 15 15 C 1.50695 * 109.47206 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99793 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99958 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99985 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99970 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47126 * 89.99710 * 19 17 15 21 21 H 1.48502 * 109.47017 * 209.99726 * 19 17 15 22 22 H 1.48503 * 109.47027 * 329.99571 * 19 17 15 23 23 H 1.09003 * 109.46911 * 311.38979 * 1 2 3 24 24 H 1.08999 * 109.46643 * 71.37989 * 1 2 3 25 25 H 1.08996 * 109.47677 * 191.38176 * 1 2 3 26 26 H 1.08996 * 109.46796 * 175.27041 * 3 2 1 27 27 H 1.08996 * 109.46847 * 295.27296 * 3 2 1 28 28 H 1.08999 * 109.47129 * 55.27341 * 3 2 1 29 29 H 1.08001 * 120.02828 * 359.69660 * 6 5 4 30 30 H 1.08000 * 119.97019 * 179.97438 * 7 6 5 31 31 H 1.08002 * 119.93800 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.97386 * 179.97438 * 9 8 7 33 33 H 1.07999 * 120.02946 * 180.02562 * 10 9 8 34 34 H 0.97007 * 119.99516 * 0.02562 * 13 11 2 35 35 H 1.09004 * 109.46897 * 300.00060 * 14 13 11 36 36 H 1.08997 * 109.47106 * 60.00068 * 14 13 11 37 37 H 0.97009 * 119.99823 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 1.6277 -1.9687 1.3292 6 6 1.9496 -2.6454 2.4968 7 6 1.5631 -3.9618 2.6597 8 6 0.8556 -4.6044 1.6607 9 6 0.5339 -3.9323 0.4960 10 6 0.9181 -2.6160 0.3282 11 6 2.0323 -0.7104 -1.2304 12 8 2.7295 -1.6966 -1.1191 13 7 1.7068 -0.2501 -2.4546 14 6 2.1946 -0.9410 -3.6507 15 6 1.6930 -0.2302 -4.8812 16 1 1.0724 0.6481 -4.7821 17 6 2.0253 -0.7019 -6.1334 18 7 2.7806 -1.7717 -6.2540 19 14 1.4028 0.1788 -7.6587 20 1 2.3816 1.2197 -8.0634 21 1 1.2368 -0.8005 -8.7626 22 1 0.0952 0.8173 -7.3626 23 1 -0.3633 0.6795 0.7710 24 1 -0.3632 0.3281 -0.9739 25 1 -0.3634 -1.0074 0.2028 26 1 3.1267 1.4436 0.0847 27 1 1.7475 1.9313 -0.9293 28 1 1.6093 1.9802 0.8446 29 1 2.5058 -2.1450 3.2757 30 1 1.8139 -4.4891 3.5683 31 1 0.5541 -5.6333 1.7902 32 1 -0.0185 -4.4367 -0.2830 33 1 0.6663 -2.0912 -0.5815 34 1 1.1494 0.5389 -2.5436 35 1 3.2847 -0.9415 -3.6508 36 1 1.8309 -1.9685 -3.6505 37 1 3.0141 -2.1037 -7.1351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326698975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:37 Heat of formation + Delta-G solvation = -63.391158 kcal Electronic energy + Delta-G solvation = -20118.375369 eV Core-core repulsion = 17053.545799 eV Total energy + Delta-G solvation = -3064.829570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.36261 -39.87890 -38.32225 -36.28435 -34.97978 -33.83751 -31.89137 -30.78903 -29.29778 -28.34758 -25.53373 -24.38798 -23.36572 -22.95623 -21.11063 -19.80671 -18.32969 -17.77735 -17.47722 -16.99210 -16.66603 -16.26979 -16.12848 -15.51493 -15.10911 -14.93051 -14.41447 -14.38955 -14.13390 -13.81468 -13.56879 -13.36686 -13.16050 -13.10619 -12.94812 -12.90607 -12.73020 -12.47013 -12.23680 -11.88296 -11.73450 -11.51683 -10.83148 -10.70795 -9.99602 -9.78767 -9.03091 -8.31180 -6.48449 0.43510 0.53307 1.42620 1.44783 1.53140 1.56057 2.05660 2.23641 2.43053 2.87333 3.04096 3.63831 3.67555 3.72301 3.96300 3.99186 4.26632 4.38352 4.50997 4.55516 4.58550 4.68376 4.71717 4.84400 5.02394 5.07460 5.08880 5.12506 5.18418 5.39384 5.42324 5.51189 5.59920 5.61834 5.80118 5.86388 6.36287 6.60865 6.77053 7.18882 7.34701 8.80931 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.005075 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.091592 B = 5515.918749 C = 6117.137524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.099 3.901 3 C -0.133 4.133 4 O -0.301 6.301 5 C 0.118 3.882 6 C -0.166 4.166 7 C -0.086 4.086 8 C -0.160 4.160 9 C -0.109 4.109 10 C -0.196 4.196 11 C 0.473 3.527 12 O -0.581 6.581 13 N -0.696 5.696 14 C 0.269 3.731 15 C -0.555 4.555 16 H 0.087 0.913 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.985 3.015 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.253 1.253 23 H 0.108 0.892 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.144 0.856 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.409 0.591 35 H -0.014 1.014 36 H -0.013 1.013 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 3.933 15.896 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.057 3.943 3 C -0.190 4.190 4 O -0.214 6.214 5 C 0.074 3.926 6 C -0.185 4.185 7 C -0.104 4.104 8 C -0.178 4.178 9 C -0.127 4.127 10 C -0.215 4.215 11 C 0.259 3.741 12 O -0.462 6.462 13 N -0.347 5.347 14 C 0.146 3.854 15 C -0.592 4.592 16 H 0.105 0.895 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.808 3.192 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.177 1.177 23 H 0.126 0.874 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.161 0.839 30 H 0.180 0.820 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.245 0.755 35 H 0.004 0.996 36 H 0.005 0.995 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.813 3.253 15.958 17.654 hybrid contribution -0.024 0.105 -1.550 1.554 sum -6.836 3.358 14.408 16.297 Atomic orbital electron populations 1.22773 0.90629 1.05087 1.05870 1.22026 0.96745 0.94152 0.81335 1.21901 1.02404 0.88717 1.05958 1.86097 1.71027 1.22553 1.41710 1.19138 0.94711 0.83978 0.94809 1.20725 1.05423 0.95988 0.96363 1.21305 0.96127 0.92999 0.99934 1.21353 1.01380 1.01251 0.93786 1.21206 0.99365 0.93580 0.98516 1.21521 1.03741 0.97689 0.98538 1.21812 0.80830 0.84926 0.86506 1.90739 1.40219 1.28125 1.87139 1.46201 1.51856 1.31447 1.05232 1.18551 0.92837 0.91670 0.82338 1.21590 1.33428 1.13717 0.90515 0.89528 1.26066 0.94686 0.95549 1.03195 1.70146 1.37228 1.24370 1.25267 0.85157 0.79298 0.77836 0.76937 1.19605 1.21115 1.17678 0.87353 0.89114 0.91270 0.92114 0.88167 0.87286 0.83853 0.81997 0.83347 0.85685 0.87204 0.75461 0.99634 0.99508 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.45 8.14 71.98 0.59 -3.86 16 2 C 0.10 3.00 0.96 -11.54 -0.01 2.99 16 3 C -0.13 -2.99 8.77 71.98 0.63 -2.36 16 4 O -0.30 -10.17 9.63 -73.40 -0.71 -10.88 16 5 C 0.12 4.09 5.53 22.51 0.12 4.21 16 6 C -0.17 -4.76 9.99 22.37 0.22 -4.54 16 7 C -0.09 -2.07 10.04 22.26 0.22 -1.84 16 8 C -0.16 -4.12 10.04 22.28 0.22 -3.90 16 9 C -0.11 -3.46 10.04 22.25 0.22 -3.24 16 10 C -0.20 -7.14 5.52 22.37 0.12 -7.01 16 11 C 0.47 19.56 4.56 87.65 0.40 19.96 16 12 O -0.58 -29.98 13.79 16.00 0.22 -29.76 16 13 N -0.70 -29.11 5.22 -466.79 -2.44 -31.54 16 14 C 0.27 14.68 5.43 85.63 0.46 15.15 16 15 C -0.55 -29.65 9.28 25.60 0.24 -29.41 16 16 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 17 C 0.00 0.26 5.46 84.65 0.46 0.72 16 18 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 19 Si 0.98 41.69 29.54 68.60 2.03 43.72 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 23 H 0.11 1.88 8.07 -2.39 -0.02 1.86 16 24 H 0.09 1.95 7.28 -2.39 -0.02 1.93 16 25 H 0.07 1.88 4.85 -2.39 -0.01 1.87 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.10 1.93 7.43 -2.39 -0.02 1.91 16 28 H 0.11 1.74 8.11 -2.39 -0.02 1.72 16 29 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 33 H 0.11 4.34 3.84 -2.91 -0.01 4.33 16 34 H 0.41 13.80 7.01 -92.70 -0.65 13.15 16 35 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -74.60 305.69 3.73 -70.87 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.43 Total: 26.53 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 3.91 Total: -13.13 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.15 Total: -87.35 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.49 Total: -40.64 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -74.60 3.73 -70.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326698975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.477 kcal (2) G-P(sol) polarization free energy of solvation -74.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds