Wall clock time and date at job start Mon Mar 30 2020 00:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41597 * 113.99864 * 2 1 4 4 C 1.34774 * 120.00083 * 93.01796 * 3 2 1 5 5 O 1.21589 * 120.00111 * 177.80026 * 4 3 2 6 6 C 1.47635 * 120.00059 * 357.79720 * 4 3 2 7 7 C 1.40012 * 119.89732 * 20.79227 * 6 4 3 8 8 C 1.36317 * 120.10909 * 180.25759 * 7 6 4 9 9 C 1.40896 * 119.89052 * 359.47957 * 8 7 6 10 10 C 1.41104 * 120.10407 * 180.30117 * 9 8 7 11 11 H 1.07994 * 120.00249 * 156.27493 * 10 9 8 12 12 C 1.40221 * 120.00078 * 336.27110 * 10 9 8 13 13 N 1.30648 * 120.00131 * 340.25892 * 12 10 9 14 14 Si 1.86799 * 120.00329 * 160.25596 * 12 10 9 15 15 H 1.48498 * 109.46880 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47196 * 120.00293 * 14 12 10 17 17 H 1.48503 * 109.47142 * 240.00080 * 14 12 10 18 18 C 1.40888 * 119.79238 * 0.27379 * 9 8 7 19 19 C 1.36321 * 119.89312 * 0.02562 * 18 9 8 20 20 C 1.46503 * 119.99935 * 273.00838 * 3 2 1 21 21 C 1.52997 * 109.46840 * 120.00425 * 20 3 2 22 22 C 1.52998 * 109.47368 * 240.00413 * 20 3 2 23 23 H 1.08991 * 109.47093 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46730 * 300.00287 * 1 2 3 25 25 H 1.09001 * 109.46948 * 60.00094 * 1 2 3 26 26 H 1.07997 * 119.94767 * 0.04111 * 7 6 4 27 27 H 1.07990 * 120.05656 * 179.75526 * 8 7 6 28 28 H 0.96993 * 120.00829 * 179.97438 * 13 12 10 29 29 H 1.07998 * 120.05834 * 180.02562 * 18 9 8 30 30 H 1.08000 * 119.94583 * 179.97438 * 19 18 9 31 31 H 1.09004 * 109.47171 * 0.02562 * 20 3 2 32 32 H 1.08997 * 109.47301 * 60.00475 * 21 20 3 33 33 H 1.09003 * 109.47206 * 180.02562 * 21 20 3 34 34 H 1.09000 * 109.47079 * 300.00084 * 21 20 3 35 35 H 1.09002 * 109.46996 * 60.00206 * 22 20 3 36 36 H 1.09000 * 109.47135 * 179.97438 * 22 20 3 37 37 H 1.09004 * 109.47138 * 300.00221 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3352 1.8842 1.1656 5 8 2.8663 2.9779 1.1638 6 6 2.0519 1.2032 2.4445 7 6 1.8587 -0.1833 2.4690 8 6 1.5917 -0.8158 3.6467 9 6 1.5212 -0.0734 4.8421 10 6 1.2515 -0.7244 6.0646 11 1 1.5625 -0.2748 6.9960 12 6 0.5795 -1.9551 6.0702 13 7 -0.1278 -2.3180 5.0335 14 14 0.6957 -3.0761 7.5600 15 1 1.5510 -2.4389 8.5933 16 1 -0.6628 -3.3046 8.1147 17 1 1.2907 -4.3755 7.1566 18 6 1.7216 1.3208 4.8132 19 6 1.9819 1.9454 3.6298 20 6 2.2420 1.9898 -1.2670 21 6 1.4563 3.3025 -1.2823 22 6 3.7356 2.2877 -1.4136 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.9177 -0.7522 1.5529 27 1 1.4389 -1.8847 3.6640 28 1 -0.5924 -3.1694 5.0371 29 1 1.6689 1.8940 5.7270 30 1 2.1352 3.0142 3.6065 31 1 1.9138 1.3606 -2.0944 32 1 1.7842 3.9319 -0.4550 33 1 1.6323 3.8204 -2.2251 34 1 0.3923 3.0903 -1.1778 35 1 4.2953 1.3524 -1.4027 36 1 3.9120 2.8053 -2.3565 37 1 4.0635 2.9171 -0.5863 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328282933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:46 Heat of formation + Delta-G solvation = -23.955727 kcal Electronic energy + Delta-G solvation = -20152.390172 eV Core-core repulsion = 17089.270651 eV Total energy + Delta-G solvation = -3063.119521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14483 -39.08231 -38.26091 -36.03459 -35.44020 -32.41122 -31.28546 -31.17155 -28.16217 -27.79698 -27.14378 -24.34889 -22.89500 -22.41007 -20.68282 -19.36227 -19.10542 -17.53865 -17.02846 -16.83920 -16.19751 -15.93466 -15.30447 -15.14435 -15.04953 -14.90947 -14.50741 -14.21135 -13.80977 -13.74894 -13.65651 -13.24305 -12.86266 -12.83939 -12.69666 -12.62106 -12.41031 -12.20077 -12.14739 -11.76714 -11.60188 -11.14043 -10.95908 -10.33957 -10.00075 -9.51489 -9.40326 -8.79643 -6.46712 0.46762 0.98109 1.19630 1.37510 1.41790 1.54865 2.03115 2.17229 2.74550 3.21534 3.70705 3.95608 4.12653 4.21961 4.31477 4.42362 4.43993 4.48377 4.59581 4.73853 4.75515 4.78070 4.92408 4.93480 5.01623 5.06668 5.20810 5.30297 5.34410 5.37019 5.61976 5.65735 5.82784 5.98355 6.06661 6.24312 6.57443 6.61539 6.78767 6.92067 7.27513 8.15973 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.005138 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.071815 B = 5448.137423 C = 5903.016506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.150 6.150 3 N -0.478 5.478 4 C 0.583 3.417 5 O -0.568 6.568 6 C -0.300 4.300 7 C -0.052 4.052 8 C -0.206 4.206 9 C 0.102 3.898 10 C -0.475 4.475 11 H 0.084 0.916 12 C 0.040 3.960 13 N -0.795 5.795 14 Si 0.986 3.014 15 H -0.258 1.258 16 H -0.262 1.262 17 H -0.261 1.261 18 C -0.257 4.257 19 C -0.032 4.032 20 C 0.138 3.862 21 C -0.166 4.166 22 C -0.162 4.162 23 H 0.123 0.877 24 H 0.032 0.968 25 H 0.071 0.929 26 H 0.137 0.863 27 H 0.109 0.891 28 H 0.297 0.703 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 0.503 -10.141 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.153 6.153 3 N -0.256 5.256 4 C 0.380 3.620 5 O -0.451 6.451 6 C -0.305 4.305 7 C -0.070 4.070 8 C -0.225 4.225 9 C 0.099 3.901 10 C -0.503 4.503 11 H 0.102 0.898 12 C -0.179 4.179 13 N -0.418 5.418 14 Si 0.805 3.195 15 H -0.181 1.181 16 H -0.186 1.186 17 H -0.185 1.185 18 C -0.276 4.276 19 C -0.051 4.051 20 C 0.039 3.961 21 C -0.224 4.224 22 C -0.220 4.220 23 H 0.141 0.859 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.154 0.846 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.595 0.716 -10.285 10.327 hybrid contribution -0.456 -0.420 0.844 1.047 sum -1.051 0.296 -9.441 9.504 Atomic orbital electron populations 1.23408 0.80667 1.04924 1.01083 1.90508 1.21465 1.07292 1.96060 1.50229 1.58902 1.10081 1.06426 1.18467 0.76522 0.83603 0.83417 1.90611 1.46140 1.21679 1.86705 1.19195 1.24098 0.94779 0.92397 1.21442 0.94174 0.93266 0.98150 1.21013 1.09326 0.99443 0.92764 1.18153 0.86403 0.91448 0.94081 1.20123 1.31720 1.04132 0.94277 0.89801 1.26909 0.91520 0.98681 1.00838 1.69773 1.18868 1.21563 1.31622 0.85102 0.79486 0.77558 0.77330 1.18110 1.18623 1.18515 1.20821 1.15356 0.94508 0.96917 1.20486 0.94618 0.98055 0.91970 1.21549 0.96993 0.93481 0.84111 1.22250 0.99405 0.96940 1.03833 1.22169 0.94167 1.02180 1.03500 0.85938 0.94892 0.91043 0.84619 0.87348 0.89194 0.87830 0.87815 0.86711 0.93087 0.88389 0.92766 0.92839 0.88478 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.10 10.79 113.37 1.22 1.12 16 2 O -0.15 -5.02 7.80 -38.78 -0.30 -5.32 16 3 N -0.48 -16.81 2.90 -445.60 -1.29 -18.10 16 4 C 0.58 25.15 7.03 86.72 0.61 25.76 16 5 O -0.57 -25.86 12.72 -3.99 -0.05 -25.91 16 6 C -0.30 -14.32 5.84 -19.93 -0.12 -14.44 16 7 C -0.05 -2.45 8.21 22.25 0.18 -2.27 16 8 C -0.21 -10.64 8.65 22.47 0.19 -10.45 16 9 C 0.10 5.46 5.58 -21.28 -0.12 5.35 16 10 C -0.48 -24.54 9.04 23.46 0.21 -24.33 16 11 H 0.08 4.17 7.92 -2.91 -0.02 4.15 16 12 C 0.04 1.88 5.10 85.35 0.44 2.32 16 13 N -0.80 -38.37 11.01 21.87 0.24 -38.13 16 14 Si 0.99 35.27 29.60 68.60 2.03 37.31 16 15 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 16 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 17 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 18 C -0.26 -13.03 9.73 22.47 0.22 -12.81 16 19 C -0.03 -1.57 9.52 22.26 0.21 -1.36 16 20 C 0.14 3.71 3.53 44.99 0.16 3.87 16 21 C -0.17 -4.17 9.12 71.98 0.66 -3.51 16 22 C -0.16 -4.24 9.12 71.98 0.66 -3.59 16 23 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 24 H 0.03 1.10 7.97 -2.39 -0.02 1.08 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.14 5.89 5.00 -4.14 -0.02 5.87 16 27 H 0.11 5.69 6.16 -2.92 -0.02 5.67 16 28 H 0.30 12.63 8.29 -92.71 -0.77 11.86 16 29 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 30 H 0.10 4.82 7.77 -2.91 -0.02 4.80 16 31 H 0.11 2.42 8.12 -2.39 -0.02 2.40 16 32 H 0.05 1.62 6.24 -2.39 -0.01 1.61 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.74 6.09 -2.39 -0.01 1.73 16 Total: -1.00 -60.83 307.09 6.21 -54.62 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 1.06 Total: 29.88 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.52 Total: -34.34 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -1.05 Total: -56.23 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.35 Total: -31.23 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.31 kcal Total: -60.83 6.21 -54.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328282933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.664 kcal (2) G-P(sol) polarization free energy of solvation -60.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds